This question might not fit in freesurfer mailing list but I'll answer here anyway - Unfortunately, for the command-line track_vis, there is no such option.

On May 7, 2013, at 9:53 AM, "Chu, Catherine,M.D." <CCHU3@partners.org> wrote:

Dear Freesurfer/TrackVis experts,

I am using the following command in a batchfile to identify tracks counts between dozens of preset ROIs.

track_vis DATAPATHtob0.trk -roi DATAPATHTOROI1.nii -roi2 DATAPATHTOROI2.nii -o PATHTOOUTPUT.trk > OUTPUT.txt -nr', i, j, i, j, i, j

Is there a line command I can use so that the tracks identified follow the rule "either end" in the ROIs instead of the default "any part"?

Thank you!
Cat
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