Hi List,

We just upgraded our Linux Box to Fedora 23 and installed csh so recon-all would run, yet we’re still getting crashed analyses.

Here is the error from my recon-all.error file:
------------------------------
SUBJECT 2_03T_N12_12_18441
DATE Thu Jan 21 16:20:16 GMT 2016
USER dsbarron
HOST psyws26.psych.ox.ac.uk
PROCESSOR x86_64
OS Linux
Linux psyws26.psych.ox.ac.uk 4.3.3-300.fc23.x86_64 #1 SMP Tue Jan 5 23:31:01 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux
$Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $
/home/freesurfer/bin/recon-all
PWD /home/dsbarron/Schmidt/Freesurfer/2_03T_N12_12_18441/mri
CMD mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz

Here is the error when I try to call just the mrinucorrect.mni function:

bash-4.3$ mri_nu_correct.mni
mri_nu_correct.mni:1: parser error : Start tag expected, '<' not found
#! /bin/tcsh -f
^
Document not parsed successfully. 

Any suggestions/ideas? Please help! Thanks!

Cheers,
Daniel