Markus,

Thanks for pointing that out. I have added those files to the ftp link.

-Zeke

On 04/04/2014 04:16 PM, Markus Gschwind wrote:

Thank you Zeke,

What about these?

/usr/local/freesurfer/bin/bet.fsl
/usr/local/freesurfer/bin/flirt.fsl
/usr/local/freesurfer/bin/slicetimer.fsl

They are not there neither compared to the ubuntu install.

Best,
Markus




2014-04-04 19:05 GMT+02:00 Z K <zkaufman@nmr.mgh.harvard.edu

<mailto:zkaufman@nmr.mgh.harvard.edu>>:

    There are 3 missing fsl files from the OSX snow leopard installation.
    They can be downloaded from here:

    ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/fsdev/zkaufman/fsl

    Copy them into your "$FREESURFER_HOME/bin" directory.

    -Zeke



    On 04/04/2014 12:32 PM, Markus Gschwind wrote:
     > Dear Freesurfers,
     >
     > As discovered here,
     >
     >
    http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg35160.html
     >
     > it seams that some Mac OSX installations suffered from incomplete
    files.
     >
     > I just veryfied that I had downloaded the complete image and wget
    says yes:
     >
     >     Logging in as anonymous ... Logged in!
     >     ==> SYST ... done.    ==> PWD ... done.
     >     ==> TYPE I ... done.  ==> CWD (1) /pub/dist/freesurfer/5.3.0
    ... done.
     >     ==> SIZE freesurfer-Darwin-snowleopard-i686-stable-pub-v5.3.0.dmg
     >     ... 3394499614
     >     File has already been retrieved.
     >     2014-04-04 18:24:26 (0.00 B/s) -
     >     ‘freesurfer-Darwin-snowleopard-i686-stable-pub-v5.3.0.dmg’ saved
     >     [3394499614]
     >
     >
     > So this is what I installed recently and it seems that there are some
     > files missing (at least some of the fsl-functions in bin).
     >
     > Doug, you said that you suspected that it could be a problem of the
     > installer script?
     >
     > What should we do (also Eiran) in order to complete the installation?
     >
     > Thanks for you work!
     > Markus
     >
     >
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