vr mrt 22 17:10:14 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025 /opt/freesurfer/6.0/bin/recon-all -s sub025 -i /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/sub025/FDT_Data.bedpostX/sub025_decline_T1.nii -all -sd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer -qcache subjid sub025 setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Actual FREESURFER_HOME /opt/freesurfer/6.0 build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize 12582912 kbytes stacksize 12288 kbytes coredumpsize unlimited memoryuse 12582912 kbytes vmemoryuse unlimited descriptors 32768 memorylocked unlimited maxproc 1031268 maxlocks unlimited maxsignal 1031268 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 264035328 28848648 225744124 730696 9442556 233828196 Swap: 52428796 0 52428796 pbsjob 35135693.dccn-l029.dccn.nl ######################################## program versions used $Id: recon-all,v 1.580.2.16 2017/01/18 14:11:24 zkaufman Exp $ $Id: mri_motion_correct.fsl,v 1.15 2016/02/16 17:17:20 zkaufman Exp $ mri_convert.bin -all-info ProgramName: mri_convert.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:14-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 FLIRT version 5.5 $Id: talairach_avi,v 1.13 2015/12/23 04:25:17 greve Exp $ mri_convert.bin --version stable6 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:14-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:15-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2019/03/22-16:10:15-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_normalize.c,v 1.88.2.3 2016/12/27 16:47:13 zkaufman Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:15-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_watershed.cpp,v 1.103 2016/06/17 18:00:49 zkaufman Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:15-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2019/03/22-16:10:15-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_segment.c,v 1.43.2.1 2016/10/27 22:24:52 zkaufman Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_label2label.bin ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2019/03/22-16:10:16-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_label2label.c,v 1.48.2.2 2016/12/12 14:15:26 zkaufman Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2019/03/22-16:10:16-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_em_register.c,v 1.105.2.1 2016/10/27 22:25:10 zkaufman Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2019/03/22-16:10:16-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_normalize.c,v 1.67.2.2 2016/10/27 22:25:09 zkaufman Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2019/03/22-16:10:16-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_register.c,v 1.96.2.3 2016/10/27 22:25:10 zkaufman Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2019/03/22-16:10:16-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_label.c,v 1.113.2.2 2016/10/27 22:25:10 zkaufman Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:16-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_pretess.c,v 1.22 2013/08/30 18:12:25 mreuter Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:17-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_fill.c,v 1.119 2011/10/25 14:09:58 fischl Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2019/03/22-16:10:17-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_concatenate_lta.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:17-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_concatenate_lta.c,v 1.16 2015/11/21 00:06:20 greve Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:17-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:17-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_smooth.c,v 1.30 2014/01/21 18:48:21 fischl Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:17-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_inflate.c,v 1.45 2016/01/20 23:42:15 greve Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:17-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:17-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2019/03/22-16:10:18-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:18-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:18-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:18-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_euler_number.c,v 1.10 2013/01/14 22:39:14 greve Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2019/03/22-16:10:18-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:18-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2019/03/22-16:10:18-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_volmask.cpp,v 1.26.2.2 2016/11/18 20:05:18 zkaufman Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:18-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_anatomical_stats.c,v 1.79 2016/03/14 15:15:34 greve Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:19-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mrisp_paint.c,v 1.12 2016/03/22 14:47:57 fischl Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:19-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_curvature_stats.c,v 1.65 2015/06/04 20:50:51 nicks Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:19-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_calc.c,v 1.54.2.1 2016/09/27 18:51:28 greve Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ ProgramName: mri_robust_register.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:19-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:19-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:19-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:19-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_or.c,v 1.5 2013/03/20 15:03:29 lzollei Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:20-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:20-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_relabel_hypointensities ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/22-16:10:20-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_relabel_hypointensities.c,v 1.13 2015/05/15 18:44:10 nicks Exp $ User: ilecam Machine: dccn-c051.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ####################################### GCADIR /opt/freesurfer/6.0/average GCA RB_all_2016-05-10.vc700.gca GCASkull RB_all_withskull_2016-05-10.vc700.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /opt/freesurfer/6.0/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025 mri_convert /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/sub025/FDT_Data.bedpostX/sub025_decline_T1.nii /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/orig/001.mgz mri_convert.bin /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/sub025/FDT_Data.bedpostX/sub025_decline_T1.nii /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/orig/001.mgz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/sub025/FDT_Data.bedpostX/sub025_decline_T1.nii... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (0.988491, 0.0415531, 0.145463) j_ras = (0.00922012, 0.943202, -0.332091) k_ras = (-0.151, 0.329611, 0.931963) writing to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/orig/001.mgz... #-------------------------------------------- #@# MotionCor vr mrt 22 17:10:30 CET 2019 Found 1 runs /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... WARNING: only one run found. This is OK, but motion correction cannot be performed on one run, so I'll copy the run to rawavg and continue. cp /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/orig/001.mgz /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/rawavg.mgz /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025 mri_convert /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/rawavg.mgz /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/orig.mgz --conform mri_convert.bin /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/rawavg.mgz /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/orig.mgz --conform $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/rawavg.mgz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (0.988491, 0.0415531, 0.145463) j_ras = (0.00922012, 0.943202, -0.332091) k_ras = (-0.151, 0.329611, 0.931963) changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram Reslicing using trilinear interpolation writing to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/orig.mgz... mri_add_xform_to_header -c /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/transforms/talairach.xfm /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/orig.mgz /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/orig.mgz INFO: extension is mgz #-------------------------------------------- #@# Talairach vr mrt 22 17:10:44 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri /opt/freesurfer/6.0/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50 nIters 1 $Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $ Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux vr mrt 22 17:10:44 CET 2019 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 /usr/bin/bc tmpdir is ./tmp.mri_nu_correct.mni.87274 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri mri_convert orig.mgz ./tmp.mri_nu_correct.mni.87274/nu0.mnc -odt float mri_convert.bin orig.mgz ./tmp.mri_nu_correct.mni.87274/nu0.mnc -odt float $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from orig.mgz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, -1.49012e-08) j_ras = (0, 0, -1) k_ras = (0, 1, 0) changing data type from uchar to float (noscale = 0)... writing to ./tmp.mri_nu_correct.mni.87274/nu0.mnc... -------------------------------------------------------- Iteration 1 vr mrt 22 17:10:47 CET 2019 nu_correct -clobber ./tmp.mri_nu_correct.mni.87274/nu0.mnc ./tmp.mri_nu_correct.mni.87274/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.87274/0/ -iterations 1000 -distance 50 [ilecam@dccn-c051.dccn.nl:/project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/] [2019-03-22 17:10:47] running: /opt/freesurfer/6.0/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 1000 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 50 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.87274/0/ ./tmp.mri_nu_correct.mni.87274/nu0.mnc ./tmp.mri_nu_correct.mni.87274/nu1.imp 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Processing:.................................................................Done Number of iterations: 61 CV of field change: 0.000999946 mri_convert ./tmp.mri_nu_correct.mni.87274/nu1.mnc orig_nu.mgz --like orig.mgz --conform mri_convert.bin ./tmp.mri_nu_correct.mni.87274/nu1.mnc orig_nu.mgz --like orig.mgz --conform $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tmp.mri_nu_correct.mni.87274/nu1.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, -1.49012e-08) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram writing to orig_nu.mgz... vr mrt 22 17:12:15 CET 2019 mri_nu_correct.mni done talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm talairach_avi log file is transforms/talairach_avi.log... Started at vr mrt 22 17:12:15 CET 2019 Ended at vr mrt 22 17:12:47 CET 2019 talairach_avi done cp transforms/talairach.auto.xfm transforms/talairach.xfm #-------------------------------------------- #@# Talairach Failure Detection vr mrt 22 17:12:49 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.6901, pval=0.4932 >= threshold=0.0050) awk -f /opt/freesurfer/6.0/bin/extract_talairach_avi_QA.awk /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/transforms/talairach_avi.log tal_QC_AZS /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/transforms/talairach_avi.log TalAviQA: 0,00000 z-score: #-------------------------------------------- #@# Nu Intensity Correction vr mrt 22 17:12:49 CET 2019 mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri /opt/freesurfer/6.0/bin/mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 nIters 2 $Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $ Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux vr mrt 22 17:12:49 CET 2019 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 /usr/bin/bc tmpdir is ./tmp.mri_nu_correct.mni.88364 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri mri_convert orig.mgz ./tmp.mri_nu_correct.mni.88364/nu0.mnc -odt float mri_convert.bin orig.mgz ./tmp.mri_nu_correct.mni.88364/nu0.mnc -odt float $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from orig.mgz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, -1.49012e-08) j_ras = (0, 0, -1) k_ras = (0, 1, 0) changing data type from uchar to float (noscale = 0)... writing to ./tmp.mri_nu_correct.mni.88364/nu0.mnc... -------------------------------------------------------- Iteration 1 vr mrt 22 17:12:52 CET 2019 nu_correct -clobber ./tmp.mri_nu_correct.mni.88364/nu0.mnc ./tmp.mri_nu_correct.mni.88364/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.88364/0/ [ilecam@dccn-c051.dccn.nl:/project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/] [2019-03-22 17:12:52] running: /opt/freesurfer/6.0/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.88364/0/ ./tmp.mri_nu_correct.mni.88364/nu0.mnc ./tmp.mri_nu_correct.mni.88364/nu1.imp Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done 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of field change: 0.000997609 -------------------------------------------------------- Iteration 2 vr mrt 22 17:13:40 CET 2019 nu_correct -clobber ./tmp.mri_nu_correct.mni.88364/nu1.mnc ./tmp.mri_nu_correct.mni.88364/nu2.mnc -tmpdir ./tmp.mri_nu_correct.mni.88364/1/ [ilecam@dccn-c051.dccn.nl:/project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/] [2019-03-22 17:13:40] running: /opt/freesurfer/6.0/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.88364/1/ ./tmp.mri_nu_correct.mni.88364/nu1.mnc ./tmp.mri_nu_correct.mni.88364/nu2.imp Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done 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Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Number of iterations: 32 CV of field change: 0.000979597 mri_binarize --i ./tmp.mri_nu_correct.mni.88364/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.88364/ones.mgz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri cmdline mri_binarize.bin --i ./tmp.mri_nu_correct.mni.88364/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.88364/ones.mgz sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam input ./tmp.mri_nu_correct.mni.88364/nu2.mnc frame 0 nErode3d 0 nErode2d 0 output ./tmp.mri_nu_correct.mni.88364/ones.mgz Binarizing based on threshold min -1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 16777216 values in range Counting number of voxels in first frame Found 16777216 voxels in final mask Count: 16777216 16777216.000000 16777216 100.000000 mri_binarize done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.88364/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.88364/sum.junk --avgwf ./tmp.mri_nu_correct.mni.88364/input.mean.dat $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.88364/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.88364/sum.junk --avgwf ./tmp.mri_nu_correct.mni.88364/input.mean.dat sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam UseRobust 0 Loading ./tmp.mri_nu_correct.mni.88364/ones.mgz Loading orig.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to ./tmp.mri_nu_correct.mni.88364/input.mean.dat mri_segstats done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.88364/ones.mgz --i ./tmp.mri_nu_correct.mni.88364/nu2.mnc --sum ./tmp.mri_nu_correct.mni.88364/sum.junk --avgwf ./tmp.mri_nu_correct.mni.88364/output.mean.dat $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.88364/ones.mgz --i ./tmp.mri_nu_correct.mni.88364/nu2.mnc --sum ./tmp.mri_nu_correct.mni.88364/sum.junk --avgwf ./tmp.mri_nu_correct.mni.88364/output.mean.dat sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam UseRobust 0 Loading ./tmp.mri_nu_correct.mni.88364/ones.mgz Loading ./tmp.mri_nu_correct.mni.88364/nu2.mnc Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to ./tmp.mri_nu_correct.mni.88364/output.mean.dat mri_segstats done mris_calc -o ./tmp.mri_nu_correct.mni.88364/nu2.mnc ./tmp.mri_nu_correct.mni.88364/nu2.mnc mul 1.05505680947130005697 Saving result to './tmp.mri_nu_correct.mni.88364/nu2.mnc' (type = MINC ) [ ok ] mri_convert ./tmp.mri_nu_correct.mni.88364/nu2.mnc nu.mgz --like orig.mgz mri_convert.bin ./tmp.mri_nu_correct.mni.88364/nu2.mnc nu.mgz --like orig.mgz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tmp.mri_nu_correct.mni.88364/nu2.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, -1.49012e-08) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz type change took 0 minutes and 9 seconds. mapping (13, 116) to ( 3, 110) vr mrt 22 17:15:14 CET 2019 mri_nu_correct.mni done mri_add_xform_to_header -c /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/transforms/talairach.xfm nu.mgz nu.mgz INFO: extension is mgz #-------------------------------------------- #@# Intensity Normalization vr mrt 22 17:15:16 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri mri_normalize -g 1 -mprage nu.mgz T1.mgz using max gradient = 1.000 assuming input volume is MGH (Van der Kouwe) MP-RAGE reading from nu.mgz... normalizing image... talairach transform 1.03680 -0.00905 -0.01602 0.53029; 0.00741 1.00235 0.05042 0.79764; 0.02362 -0.01170 1.08314 -9.63683; 0.00000 0.00000 0.00000 1.00000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 10 Starting OpenSpline(): npoints = 10 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 89 gm peak at 53 (53), valley at 41 (41) csf peak at 27, setting threshold to 44 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 79 (79), valley at 68 (68) csf peak at 27, setting threshold to 61 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to T1.mgz 3D bias adjustment took 2 minutes and 10 seconds. #-------------------------------------------- #@# Skull Stripping vr mrt 22 17:17:27 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri mri_em_register -rusage /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/touch/rusage.mri_em_register.skull.dat -skull nu.mgz /opt/freesurfer/6.0/average/RB_all_withskull_2016-05-10.vc700.gca transforms/talairach_with_skull.lta aligning to atlas containing skull, setting unknown_nbr_spacing = 5 == Number of threads available to mri_em_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach_with_skull.log reading '/opt/freesurfer/6.0/average/RB_all_withskull_2016-05-10.vc700.gca'... average std = 22.9 using min determinant for regularization = 52.6 0 singular and 9002 ill-conditioned covariance matrices regularized reading 'nu.mgz'... freeing gibbs priors...done. accounting for voxel sizes in initial transform bounding unknown intensity as < 8.7 or > 569.1 total sample mean = 77.6 (1399 zeros) ************************************************ spacing=8, using 3243 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 3243, passno 0, spacing 8 resetting wm mean[0]: 100 --> 108 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=5.0 skull bounding box = (36, 13, 24) --> (218, 255, 227) using (97, 94, 126) as brain centroid... mean wm in atlas = 108, using box (75,64,101) --> (119, 123,151) to find MRI wm before smoothing, mri peak at 105 robust fit to distribution - 104 +- 10.9 distribution too broad for accurate scaling - disabling after smoothing, mri peak at 108, scaling input intensities by 1.000 scaling channel 0 by 1 initial log_p = -4.683 ************************************************ First Search limited to translation only. ************************************************ max log p = -4.340539 @ (-9.091, 27.273, -9.091) max log p = -4.313632 @ (4.545, -4.545, -4.545) max log p = -4.233049 @ (-2.273, 2.273, 2.273) max log p = -4.228275 @ (1.136, 3.409, -1.136) max log p = -4.208611 @ (-1.705, -3.977, -0.568) max log p = -4.208611 @ (0.000, 0.000, 0.000) Found translation: (-7.4, 24.4, -13.1): log p = -4.209 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.196, old_max_log_p =-4.209 (thresh=-4.2) 1.00000 0.00000 0.00000 -7.38637; 0.00000 1.07500 0.00000 23.10114; 0.00000 0.00000 1.00000 -13.06818; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.131, old_max_log_p =-4.196 (thresh=-4.2) 1.00000 0.00000 0.00000 -7.38637; 0.00000 1.23625 0.00000 5.24018; 0.00000 0.00000 1.00000 -13.06818; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 2 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.131, old_max_log_p =-4.131 (thresh=-4.1) 1.00000 0.00000 0.00000 -7.38637; 0.00000 1.23625 0.00000 5.24018; 0.00000 0.00000 1.00000 -13.06818; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-4.086, old_max_log_p =-4.131 (thresh=-4.1) 1.03750 0.00000 0.00000 -12.34618; 0.00000 1.21307 0.00000 7.80770; 0.00000 0.00000 0.98125 -10.74334; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 4 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-4.086, old_max_log_p =-4.086 (thresh=-4.1) 1.03750 0.00000 0.00000 -12.34618; 0.00000 1.21307 0.00000 7.80770; 0.00000 0.00000 0.98125 -10.74334; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-4.079, old_max_log_p =-4.086 (thresh=-4.1) 1.03736 -0.01985 0.00000 -10.12934; 0.01702 1.21575 0.00000 5.26035; 0.00000 0.00000 0.98355 -11.02850; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 6 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-4.073, old_max_log_p =-4.079 (thresh=-4.1) 1.03386 0.00005 0.00000 -11.86935; 0.00004 1.21302 -0.00805 8.80546; 0.00000 0.00991 0.98236 -11.97954; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 7 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-4.073, old_max_log_p =-4.073 (thresh=-4.1) 1.03386 0.00005 0.00000 -11.86935; 0.00004 1.21302 -0.00805 8.80546; 0.00000 0.00991 0.98236 -11.97954; 0.00000 0.00000 0.00000 1.00000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 3243 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.03386 0.00005 0.00000 -11.86935; 0.00004 1.21302 -0.00805 8.80546; 0.00000 0.00991 0.98236 -11.97954; 0.00000 0.00000 0.00000 1.00000; nsamples 3243 Quasinewton: input matrix 1.03386 0.00005 0.00000 -11.86935; 0.00004 1.21302 -0.00805 8.80546; 0.00000 0.00991 0.98236 -11.97954; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 010: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.03386 0.00005 0.00000 -11.86935; 0.00004 1.21302 -0.00805 8.80546; 0.00000 0.00991 0.98236 -11.97954; 0.00000 0.00000 0.00000 1.00000; pass 1, spacing 8: log(p) = -4.073 (old=-4.683) transform before final EM align: 1.03386 0.00005 0.00000 -11.86935; 0.00004 1.21302 -0.00805 8.80546; 0.00000 0.00991 0.98236 -11.97954; 0.00000 0.00000 0.00000 1.00000; ************************************************** EM alignment process ... Computing final MAP estimate using 364799 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.03386 0.00005 0.00000 -11.86935; 0.00004 1.21302 -0.00805 8.80546; 0.00000 0.00991 0.98236 -11.97954; 0.00000 0.00000 0.00000 1.00000; nsamples 364799 Quasinewton: input matrix 1.03386 0.00005 0.00000 -11.86935; 0.00004 1.21302 -0.00805 8.80546; 0.00000 0.00991 0.98236 -11.97954; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 012: -log(p) = 4.4 tol 0.000000 final transform: 1.03386 0.00005 0.00000 -11.86935; 0.00004 1.21302 -0.00805 8.80546; 0.00000 0.00991 0.98236 -11.97954; 0.00000 0.00000 0.00000 1.00000; writing output transformation to transforms/talairach_with_skull.lta... mri_em_register utimesec 1502.896636 mri_em_register stimesec 5.883390 mri_em_register ru_maxrss 613688 mri_em_register ru_ixrss 0 mri_em_register ru_idrss 0 mri_em_register ru_isrss 0 mri_em_register ru_minflt 1199386 mri_em_register ru_majflt 1 mri_em_register ru_nswap 0 mri_em_register ru_inblock 149472 mri_em_register ru_oublock 32 mri_em_register ru_msgsnd 0 mri_em_register ru_msgrcv 0 mri_em_register ru_nsignals 0 mri_em_register ru_nvcsw 49 mri_em_register ru_nivcsw 2902 registration took 25 minutes and 9 seconds. mri_watershed -rusage /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/touch/rusage.mri_watershed.dat -T1 -brain_atlas /opt/freesurfer/6.0/average/RB_all_withskull_2016-05-10.vc700.gca transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Use the information of atlas (default parms, --help for details) ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz Weighting the input with atlas information before watershed *************************WATERSHED************************** Sorting... first estimation of the COG coord: x=134 y=90 z=126 r=96 first estimation of the main basin volume: 3724564 voxels Looking for seedpoints 2 found in the cerebellum 18 found in the rest of the brain global maximum in x=152, y=72, z=90, Imax=255 CSF=18, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 10 percent done. Analyze... main basin size=444694322 voxels, voxel volume =1.000 = 444694322 mmm3 = 444694.336 cm3 done. PostAnalyze...Basin Prior 15 basins merged thanks to atlas ***** 0 basin(s) merged in 1 iteration(s) ***** 0 voxel(s) added to the main basin done. Weighting the input with prior template ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=132,y=94, z=116, r=9755 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=1, CSF_intensity=2, CSF_MAX=59 , nb = 44738 RIGHT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=15 , nb = -1036697993 LEFT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=13 , nb = -1043942753 RIGHT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=69 , nb = -1097770889 LEFT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=59 , nb = 1070991998 OTHER CSF_MIN=7, CSF_intensity=23, CSF_MAX=55 , nb = 1076419254 CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 59, 56, 55, 82 after analyzing : 32, 56, 56, 62 RIGHT_CER before analyzing : 15, 23, 48, 87 after analyzing : 15, 39, 48, 51 LEFT_CER before analyzing : 13, 22, 54, 90 after analyzing : 13, 43, 54, 54 RIGHT_BRAIN before analyzing : 69, 60, 57, 82 after analyzing : 43, 60, 60, 65 LEFT_BRAIN before analyzing : 59, 54, 52, 81 after analyzing : 31, 54, 54, 60 OTHER before analyzing : 55, 68, 75, 92 after analyzing : 55, 72, 75, 77 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...68 iterations *********************VALIDATION********************* curvature mean = -0.013, std = 0.012 curvature mean = 68.275, std = 8.390 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 3.41, sigma = 5.37 after rotation: sse = 3.41, sigma = 5.37 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 3.54, its var is 4.43 before Erosion-Dilatation 0.62% of inacurate vertices after Erosion-Dilatation 0.00% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...56 iterations mri_strip_skull: done peeling brain Brain Size = 1675178 voxels, voxel volume = 1.000 mm3 = 1675178 mmm3 = 1675.178 cm3 ****************************** Saving brainmask.auto.mgz done mri_watershed utimesec 26.741679 mri_watershed stimesec 0.673991 mri_watershed ru_maxrss 849672 mri_watershed ru_ixrss 0 mri_watershed ru_idrss 0 mri_watershed ru_isrss 0 mri_watershed ru_minflt 486239 mri_watershed ru_majflt 1 mri_watershed ru_nswap 0 mri_watershed ru_inblock 8600 mri_watershed ru_oublock 2800 mri_watershed ru_msgsnd 0 mri_watershed ru_msgrcv 0 mri_watershed ru_nsignals 0 mri_watershed ru_nvcsw 114 mri_watershed ru_nivcsw 229 mri_watershed done cp brainmask.auto.mgz brainmask.mgz #------------------------------------- #@# EM Registration vr mrt 22 17:43:04 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri mri_em_register -rusage /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/touch/rusage.mri_em_register.dat -uns 3 -mask brainmask.mgz nu.mgz /opt/freesurfer/6.0/average/RB_all_2016-05-10.vc700.gca transforms/talairach.lta setting unknown_nbr_spacing = 3 using MR volume brainmask.mgz to mask input volume... == Number of threads available to mri_em_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach.log reading '/opt/freesurfer/6.0/average/RB_all_2016-05-10.vc700.gca'... average std = 7.3 using min determinant for regularization = 5.3 0 singular and 841 ill-conditioned covariance matrices regularized reading 'nu.mgz'... freeing gibbs priors...done. accounting for voxel sizes in initial transform bounding unknown intensity as < 6.3 or > 503.7 total sample mean = 78.8 (1011 zeros) ************************************************ spacing=8, using 2830 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 2830, passno 0, spacing 8 resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=17.0 skull bounding box = (63, 30, 36) --> (202, 146, 210) using (109, 69, 123) as brain centroid... mean wm in atlas = 107, using box (92,55,102) --> (126, 83,144) to find MRI wm before smoothing, mri peak at 103 robust fit to distribution - 103 +- 6.2 after smoothing, mri peak at 103, scaling input intensities by 1.039 scaling channel 0 by 1.03883 initial log_p = -4.692 ************************************************ First Search limited to translation only. ************************************************ max log p = -3.895874 @ (-9.091, 27.273, -9.091) max log p = -3.886628 @ (4.545, -4.545, -4.545) max log p = -3.826500 @ (-2.273, 2.273, 2.273) max log p = -3.823982 @ (1.136, 1.136, -1.136) max log p = -3.818296 @ (-1.705, -1.705, 0.568) max log p = -3.818296 @ (0.000, 0.000, 0.000) Found translation: (-7.4, 24.4, -11.9): log p = -3.818 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.818, old_max_log_p =-3.818 (thresh=-3.8) 1.00000 0.00000 0.00000 -7.38637; 0.00000 1.00000 0.00000 24.43182; 0.00000 0.00000 1.00000 -11.93182; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 1 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.748, old_max_log_p =-3.818 (thresh=-3.8) 1.01820 0.00000 0.03333 -13.74046; 0.00000 1.05695 0.00000 20.97466; -0.03211 0.00000 0.98072 -5.36324; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 2 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.741, old_max_log_p =-3.748 (thresh=-3.7) 0.99961 0.00000 0.00120 -7.47516; 0.00000 1.07677 0.00000 21.00626; 0.00123 0.00000 0.98129 -9.90020; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.729, old_max_log_p =-3.741 (thresh=-3.7) 0.99961 0.00000 0.00120 -7.47516; 0.00000 1.09696 0.00000 19.16344; 0.00125 0.00000 0.99969 -12.06290; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 4 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.729, old_max_log_p =-3.729 (thresh=-3.7) 0.99961 0.00000 0.00120 -7.47516; 0.00000 1.09696 0.00000 19.16344; 0.00125 0.00000 0.99969 -12.06290; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.707, old_max_log_p =-3.729 (thresh=-3.7) 1.00076 -0.00011 0.00939 -8.10314; 0.00006 1.09424 0.01645 16.55057; -0.00693 -0.01809 0.99951 -10.23867; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 6 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.701, old_max_log_p =-3.707 (thresh=-3.7) 1.00193 -0.00011 0.00940 -8.26115; 0.00006 1.09424 0.01645 16.55057; -0.00694 -0.01812 1.00068 -10.37424; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 7 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.701, old_max_log_p =-3.701 (thresh=-3.7) 1.00193 -0.00011 0.00940 -8.26115; 0.00006 1.09424 0.01645 16.55057; -0.00694 -0.01812 1.00068 -10.37424; 0.00000 0.00000 0.00000 1.00000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 2830 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.00193 -0.00011 0.00940 -8.26115; 0.00006 1.09424 0.01645 16.55057; -0.00694 -0.01812 1.00068 -10.37424; 0.00000 0.00000 0.00000 1.00000; nsamples 2830 Quasinewton: input matrix 1.00193 -0.00011 0.00940 -8.26115; 0.00006 1.09424 0.01645 16.55057; -0.00694 -0.01812 1.00068 -10.37424; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 010: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.00193 -0.00011 0.00940 -8.26115; 0.00006 1.09424 0.01645 16.55057; -0.00694 -0.01812 1.00068 -10.37424; 0.00000 0.00000 0.00000 1.00000; pass 1, spacing 8: log(p) = -3.701 (old=-4.692) transform before final EM align: 1.00193 -0.00011 0.00940 -8.26115; 0.00006 1.09424 0.01645 16.55057; -0.00694 -0.01812 1.00068 -10.37424; 0.00000 0.00000 0.00000 1.00000; ************************************************** EM alignment process ... Computing final MAP estimate using 315557 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.00193 -0.00011 0.00940 -8.26115; 0.00006 1.09424 0.01645 16.55057; -0.00694 -0.01812 1.00068 -10.37424; 0.00000 0.00000 0.00000 1.00000; nsamples 315557 Quasinewton: input matrix 1.00193 -0.00011 0.00940 -8.26115; 0.00006 1.09424 0.01645 16.55057; -0.00694 -0.01812 1.00068 -10.37424; 0.00000 0.00000 0.00000 1.00000; dfp_em_step_func: 011: -log(p) = 4.1 after pass:transform: ( 1.00, -0.00, 0.01, -8.26) ( 0.00, 1.09, 0.02, 16.55) ( -0.01, -0.02, 1.00, -10.37) dfp_em_step_func: 012: -log(p) = 4.1 after pass:transform: ( 1.00, 0.00, 0.01, -8.26) ( 0.00, 1.09, 0.02, 16.55) ( -0.01, -0.02, 1.00, -10.37) pass 2 through quasi-newton minimization... outof QuasiNewtonEMA: 014: -log(p) = 4.1 tol 0.000000 final transform: 1.00235 0.00018 0.00983 -8.26115; 0.00018 1.09432 0.01659 16.55057; -0.00678 -0.01798 1.00078 -10.37424; 0.00000 0.00000 0.00000 1.00000; writing output transformation to transforms/talairach.lta... mri_em_register utimesec 1317.260640 mri_em_register stimesec 4.940294 mri_em_register ru_maxrss 603168 mri_em_register ru_ixrss 0 mri_em_register ru_idrss 0 mri_em_register ru_isrss 0 mri_em_register ru_minflt 1026176 mri_em_register ru_majflt 0 mri_em_register ru_nswap 0 mri_em_register ru_inblock 142952 mri_em_register ru_oublock 24 mri_em_register ru_msgsnd 0 mri_em_register ru_msgrcv 0 mri_em_register ru_nsignals 0 mri_em_register ru_nvcsw 74 mri_em_register ru_nivcsw 2797 registration took 22 minutes and 2 seconds. #-------------------------------------- #@# CA Normalize vr mrt 22 18:05:07 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri mri_ca_normalize -c ctrl_pts.mgz -mask brainmask.mgz nu.mgz /opt/freesurfer/6.0/average/RB_all_2016-05-10.vc700.gca transforms/talairach.lta norm.mgz writing control point volume to ctrl_pts.mgz using MR volume brainmask.mgz to mask input volume... reading 1 input volume reading atlas from '/opt/freesurfer/6.0/average/RB_all_2016-05-10.vc700.gca'... reading transform from 'transforms/talairach.lta'... reading input volume from nu.mgz... resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=17.0 skull bounding box = (63, 30, 36) --> (202, 146, 210) using (109, 69, 123) as brain centroid... mean wm in atlas = 107, using box (92,55,102) --> (126, 83,144) to find MRI wm before smoothing, mri peak at 103 robust fit to distribution - 103 +- 6.2 after smoothing, mri peak at 103, scaling input intensities by 1.039 scaling channel 0 by 1.03883 using 246344 sample points... INFO: compute sample coordinates transform 1.00235 0.00018 0.00983 -8.26115; 0.00018 1.09432 0.01659 16.55057; -0.00678 -0.01798 1.00078 -10.37424; 0.00000 0.00000 0.00000 1.00000; INFO: transform used finding control points in Left_Cerebral_White_Matter.... found 39915 control points for structure... bounding box (133, 30, 39) --> (199, 140, 207) Left_Cerebral_White_Matter: limiting intensities to 107.0 --> 132.0 0 of 36 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39557 control points for structure... bounding box (69, 31, 39) --> (135, 140, 207) Right_Cerebral_White_Matter: limiting intensities to 105.0 --> 132.0 0 of 55 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3059 control points for structure... bounding box (135, 110, 62) --> (183, 148, 116) Left_Cerebellum_White_Matter: limiting intensities to 103.0 --> 132.0 2 of 13 (15.4%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2705 control points for structure... bounding box (89, 110, 59) --> (133, 148, 117) Right_Cerebellum_White_Matter: limiting intensities to 111.0 --> 132.0 1 of 17 (5.9%) samples deleted finding control points in Brain_Stem.... found 3518 control points for structure... bounding box (117, 102, 96) --> (151, 166, 128) Brain_Stem: limiting intensities to 107.0 --> 132.0 19 of 27 (70.4%) samples deleted using 148 total control points for intensity normalization... bias field = 0.853 +- 0.083 0 of 126 control points discarded finding control points in Left_Cerebral_White_Matter.... found 39915 control points for structure... bounding box (133, 30, 39) --> (199, 140, 207) Left_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0 0 of 162 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39557 control points for structure... bounding box (69, 31, 39) --> (135, 140, 207) Right_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0 0 of 142 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3059 control points for structure... bounding box (135, 110, 62) --> (183, 148, 116) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 31 of 62 (50.0%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2705 control points for structure... bounding box (89, 110, 59) --> (133, 148, 117) Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 37 of 76 (48.7%) samples deleted finding control points in Brain_Stem.... found 3518 control points for structure... bounding box (117, 102, 96) --> (151, 166, 128) Brain_Stem: limiting intensities to 88.0 --> 132.0 56 of 97 (57.7%) samples deleted using 539 total control points for intensity normalization... bias field = 1.012 +- 0.079 0 of 414 control points discarded finding control points in Left_Cerebral_White_Matter.... found 39915 control points for structure... bounding box (133, 30, 39) --> (199, 140, 207) Left_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0 1 of 244 (0.4%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39557 control points for structure... bounding box (69, 31, 39) --> (135, 140, 207) Right_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0 2 of 240 (0.8%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3059 control points for structure... bounding box (135, 110, 62) --> (183, 148, 116) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 66 of 132 (50.0%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2705 control points for structure... bounding box (89, 110, 59) --> (133, 148, 117) Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 81 of 102 (79.4%) samples deleted finding control points in Brain_Stem.... found 3518 control points for structure... bounding box (117, 102, 96) --> (151, 166, 128) Brain_Stem: limiting intensities to 88.0 --> 132.0 152 of 198 (76.8%) samples deleted using 916 total control points for intensity normalization... bias field = 1.009 +- 0.059 0 of 606 control points discarded writing normalized volume to norm.mgz... writing control points to ctrl_pts.mgz freeing GCA...done. normalization took 1 minutes and 30 seconds. #-------------------------------------- #@# CA Reg vr mrt 22 18:06:37 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri mri_ca_register -rusage /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/touch/rusage.mri_ca_register.dat -nobigventricles -T transforms/talairach.lta -align-after -mask brainmask.mgz norm.mgz /opt/freesurfer/6.0/average/RB_all_2016-05-10.vc700.gca transforms/talairach.m3z not handling expanded ventricles... using previously computed transform transforms/talairach.lta renormalizing sequences with structure alignment, equivalent to: -renormalize -regularize_mean 0.500 -regularize 0.500 using MR volume brainmask.mgz to mask input volume... == Number of threads available to mri_ca_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach.log reading input volume 'norm.mgz'... reading GCA '/opt/freesurfer/6.0/average/RB_all_2016-05-10.vc700.gca'... label assignment complete, 0 changed (0.00%) det(m_affine) = 1.10 (predicted orig area = 7.3) label assignment complete, 0 changed (0.00%) freeing gibbs priors...done. average std[0] = 5.0 **************** pass 1 of 1 ************************ enabling zero nodes setting smoothness coefficient to 0.039 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.912, neg=0, invalid=762 0001: dt=207.879699, rms=0.849 (6.844%), neg=0, invalid=762 0002: dt=369.920000, rms=0.825 (2.856%), neg=0, invalid=762 0003: dt=141.913043, rms=0.812 (1.544%), neg=0, invalid=762 0004: dt=887.808000, rms=0.800 (1.488%), neg=0, invalid=762 0005: dt=157.842697, rms=0.792 (1.055%), neg=0, invalid=762 0006: dt=295.936000, rms=0.789 (0.300%), neg=0, invalid=762 0007: dt=129.472000, rms=0.787 (0.330%), neg=0, invalid=762 0008: dt=2071.552000, rms=0.772 (1.865%), neg=0, invalid=762 0009: dt=129.472000, rms=0.769 (0.426%), neg=0, invalid=762 0010: dt=517.888000, rms=0.767 (0.269%), neg=0, invalid=762 0011: dt=129.472000, rms=0.766 (0.132%), neg=0, invalid=762 0012: dt=129.472000, rms=0.765 (0.065%), neg=0, invalid=762 0013: dt=129.472000, rms=0.764 (0.116%), neg=0, invalid=762 0014: dt=129.472000, rms=0.763 (0.163%), neg=0, invalid=762 0015: dt=129.472000, rms=0.762 (0.201%), neg=0, invalid=762 0016: dt=129.472000, rms=0.760 (0.228%), neg=0, invalid=762 0017: dt=129.472000, rms=0.758 (0.253%), neg=0, invalid=762 0018: dt=129.472000, rms=0.756 (0.264%), neg=0, invalid=762 0019: dt=129.472000, rms=0.754 (0.272%), neg=0, invalid=762 0020: dt=129.472000, rms=0.752 (0.275%), neg=0, invalid=762 0021: dt=129.472000, rms=0.750 (0.271%), neg=0, invalid=762 0022: dt=129.472000, rms=0.748 (0.263%), neg=0, invalid=762 0023: dt=129.472000, rms=0.746 (0.256%), neg=0, invalid=762 0024: dt=129.472000, rms=0.744 (0.254%), neg=0, invalid=762 0025: dt=129.472000, rms=0.742 (0.246%), neg=0, invalid=762 0026: dt=129.472000, rms=0.740 (0.235%), neg=0, invalid=762 0027: dt=129.472000, rms=0.739 (0.216%), neg=0, invalid=762 0028: dt=129.472000, rms=0.737 (0.200%), neg=0, invalid=762 0029: dt=129.472000, rms=0.736 (0.190%), neg=0, invalid=762 0030: dt=129.472000, rms=0.735 (0.189%), neg=0, invalid=762 0031: dt=129.472000, rms=0.733 (0.183%), neg=0, invalid=762 0032: dt=129.472000, rms=0.732 (0.177%), neg=0, invalid=762 0033: dt=129.472000, rms=0.731 (0.164%), neg=0, invalid=762 0034: dt=129.472000, rms=0.730 (0.147%), neg=0, invalid=762 0035: dt=129.472000, rms=0.729 (0.138%), neg=0, invalid=762 0036: dt=129.472000, rms=0.728 (0.136%), neg=0, invalid=762 0037: dt=129.472000, rms=0.727 (0.136%), neg=0, invalid=762 0038: dt=129.472000, rms=0.726 (0.132%), neg=0, invalid=762 0039: dt=129.472000, rms=0.725 (0.111%), neg=0, invalid=762 0040: dt=129.472000, rms=0.724 (0.103%), neg=0, invalid=762 0041: dt=3551.232000, rms=0.723 (0.213%), neg=0, invalid=762 0042: dt=73.984000, rms=0.722 (0.042%), neg=0, invalid=762 0043: dt=73.984000, rms=0.722 (0.000%), neg=0, invalid=762 0044: dt=73.984000, rms=0.722 (-0.014%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.723, neg=0, invalid=762 0045: dt=92.480000, rms=0.722 (0.077%), neg=0, invalid=762 0046: dt=129.472000, rms=0.722 (0.023%), neg=0, invalid=762 0047: dt=129.472000, rms=0.722 (0.030%), neg=0, invalid=762 0048: dt=129.472000, rms=0.721 (0.044%), neg=0, invalid=762 0049: dt=129.472000, rms=0.721 (0.051%), neg=0, invalid=762 0050: dt=129.472000, rms=0.721 (0.044%), neg=0, invalid=762 0051: dt=129.472000, rms=0.720 (0.040%), neg=0, invalid=762 setting smoothness coefficient to 0.154 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.727, neg=0, invalid=762 0052: dt=152.785146, rms=0.718 (1.204%), neg=0, invalid=762 0053: dt=178.802661, rms=0.705 (1.812%), neg=0, invalid=762 0054: dt=73.600000, rms=0.701 (0.685%), neg=0, invalid=762 0055: dt=219.428571, rms=0.695 (0.856%), neg=0, invalid=762 0056: dt=66.909091, rms=0.690 (0.684%), neg=0, invalid=762 0057: dt=145.152000, rms=0.687 (0.433%), neg=0, invalid=762 0058: dt=72.000000, rms=0.684 (0.403%), neg=0, invalid=762 0059: dt=145.152000, rms=0.682 (0.299%), neg=0, invalid=762 0060: dt=72.657825, rms=0.680 (0.339%), neg=0, invalid=762 0061: dt=124.416000, rms=0.678 (0.227%), neg=0, invalid=762 0062: dt=124.416000, rms=0.677 (0.207%), neg=0, invalid=762 0063: dt=124.416000, rms=0.672 (0.645%), neg=0, invalid=762 0064: dt=124.416000, rms=0.670 (0.413%), neg=0, invalid=762 0065: dt=124.416000, rms=0.664 (0.792%), neg=0, invalid=762 0066: dt=124.416000, rms=0.660 (0.659%), neg=0, invalid=762 0067: dt=124.416000, rms=0.657 (0.434%), neg=0, invalid=762 0068: dt=124.416000, rms=0.653 (0.706%), neg=0, invalid=762 0069: dt=124.416000, rms=0.650 (0.418%), neg=0, invalid=762 0070: dt=124.416000, rms=0.648 (0.286%), neg=0, invalid=762 0071: dt=124.416000, rms=0.645 (0.481%), neg=0, invalid=762 0072: dt=124.416000, rms=0.643 (0.228%), neg=0, invalid=762 0073: dt=124.416000, rms=0.642 (0.156%), neg=0, invalid=762 0074: dt=124.416000, rms=0.640 (0.306%), neg=0, invalid=762 0075: dt=124.416000, rms=0.640 (0.116%), neg=0, invalid=762 0076: dt=124.416000, rms=0.639 (0.116%), neg=0, invalid=762 0077: dt=124.416000, rms=0.637 (0.240%), neg=0, invalid=762 0078: dt=124.416000, rms=0.637 (0.081%), neg=0, invalid=762 0079: dt=124.416000, rms=0.636 (0.058%), neg=0, invalid=762 0080: dt=36.288000, rms=0.636 (0.076%), neg=0, invalid=762 0081: dt=145.152000, rms=0.636 (0.023%), neg=0, invalid=762 0082: dt=145.152000, rms=0.636 (-0.013%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.636, neg=0, invalid=762 0083: dt=62.208000, rms=0.635 (0.196%), neg=0, invalid=762 0084: dt=82.944000, rms=0.635 (0.035%), neg=0, invalid=762 0085: dt=82.944000, rms=0.635 (-0.017%), neg=0, invalid=762 setting smoothness coefficient to 0.588 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.665, neg=0, invalid=762 0086: dt=0.000000, rms=0.665 (0.084%), neg=0, invalid=762 0087: dt=0.000000, rms=0.665 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.665, neg=0, invalid=762 0088: dt=0.000000, rms=0.665 (0.084%), neg=0, invalid=762 0089: dt=0.000000, rms=0.665 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.753, neg=0, invalid=762 0090: dt=5.372632, rms=0.727 (3.554%), neg=0, invalid=762 0091: dt=1.500000, rms=0.726 (0.073%), neg=0, invalid=762 0092: dt=1.500000, rms=0.726 (-0.042%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.727, neg=0, invalid=762 0093: dt=0.000000, rms=0.726 (0.060%), neg=0, invalid=762 0094: dt=0.000000, rms=0.726 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 5.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.808, neg=0, invalid=762 0095: dt=1.792000, rms=0.799 (1.175%), neg=0, invalid=762 0096: dt=1.792000, rms=0.793 (0.770%), neg=0, invalid=762 0097: dt=0.384000, rms=0.792 (0.030%), neg=0, invalid=762 0098: dt=0.384000, rms=0.792 (0.000%), neg=0, invalid=762 0099: dt=0.384000, rms=0.792 (-0.050%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.793, neg=0, invalid=762 0100: dt=0.448000, rms=0.792 (0.079%), neg=0, invalid=762 0101: dt=0.448000, rms=0.792 (0.013%), neg=0, invalid=762 0102: dt=0.448000, rms=0.792 (-0.002%), neg=0, invalid=762 resetting metric properties... setting smoothness coefficient to 10.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.730, neg=0, invalid=762 0103: dt=0.929185, rms=0.708 (2.924%), neg=0, invalid=762 0104: dt=0.096000, rms=0.707 (0.177%), neg=0, invalid=762 0105: dt=0.096000, rms=0.707 (-0.094%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.707, neg=0, invalid=762 0106: dt=0.028000, rms=0.707 (0.075%), neg=0, invalid=762 0107: dt=0.007000, rms=0.707 (-0.000%), neg=0, invalid=762 renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.10027 (20) mri peak = 0.13324 (21) Left_Lateral_Ventricle (4): linear fit = 1.01 x + 0.0 (3260 voxels, overlap=0.798) Left_Lateral_Ventricle (4): linear fit = 1.01 x + 0.0 (3260 voxels, peak = 20), gca=20.3 gca peak = 0.15565 (16) mri peak = 0.13106 (20) Right_Lateral_Ventricle (43): linear fit = 1.24 x + 0.0 (2519 voxels, overlap=0.870) Right_Lateral_Ventricle (43): linear fit = 1.24 x + 0.0 (2519 voxels, peak = 20), gca=19.8 gca peak = 0.26829 (96) mri peak = 0.07645 (98) Right_Pallidum (52): linear fit = 1.01 x + 0.0 (1136 voxels, overlap=1.002) Right_Pallidum (52): linear fit = 1.01 x + 0.0 (1136 voxels, peak = 97), gca=97.4 gca peak = 0.20183 (93) mri peak = 0.06612 (94) Left_Pallidum (13): linear fit = 1.00 x + 0.0 (971 voxels, overlap=1.014) Left_Pallidum (13): linear fit = 1.00 x + 0.0 (971 voxels, peak = 93), gca=92.5 gca peak = 0.21683 (55) mri peak = 0.07948 (71) Right_Hippocampus (53): linear fit = 1.25 x + 0.0 (777 voxels, overlap=0.045) Right_Hippocampus (53): linear fit = 1.25 x + 0.0 (777 voxels, peak = 68), gca=68.5 gca peak = 0.30730 (58) mri peak = 0.06140 (70) Left_Hippocampus (17): linear fit = 1.22 x + 0.0 (1072 voxels, overlap=0.018) Left_Hippocampus (17): linear fit = 1.22 x + 0.0 (1072 voxels, peak = 70), gca=70.5 gca peak = 0.11430 (101) mri peak = 0.06896 (103) Right_Cerebral_White_Matter (41): linear fit = 1.03 x + 0.0 (66761 voxels, overlap=0.902) Right_Cerebral_White_Matter (41): linear fit = 1.03 x + 0.0 (66761 voxels, peak = 105), gca=104.5 gca peak = 0.12076 (102) mri peak = 0.07308 (102) Left_Cerebral_White_Matter (2): linear fit = 1.03 x + 0.0 (68193 voxels, overlap=0.878) Left_Cerebral_White_Matter (2): linear fit = 1.03 x + 0.0 (68193 voxels, peak = 106), gca=105.6 gca peak = 0.14995 (59) mri peak = 0.03971 (90) Left_Cerebral_Cortex (3): linear fit = 1.48 x + 0.0 (26111 voxels, overlap=0.000) Left_Cerebral_Cortex (3): linear fit = 1.48 x + 0.0 (26111 voxels, peak = 87), gca=87.0 gca peak = 0.15082 (58) mri peak = 0.03717 (86) Right_Cerebral_Cortex (42): linear fit = 1.47 x + 0.0 (26332 voxels, overlap=0.000) Right_Cerebral_Cortex (42): linear fit = 1.47 x + 0.0 (26332 voxels, peak = 85), gca=85.0 gca peak = 0.14161 (67) mri peak = 0.12512 (79) Right_Caudate (50): linear fit = 1.16 x + 0.0 (1150 voxels, overlap=0.033) Right_Caudate (50): linear fit = 1.16 x + 0.0 (1150 voxels, peak = 78), gca=78.1 gca peak = 0.15243 (71) mri peak = 0.12475 (79) Left_Caudate (11): linear fit = 1.09 x + 0.0 (774 voxels, overlap=0.575) Left_Caudate (11): linear fit = 1.09 x + 0.0 (774 voxels, peak = 77), gca=77.0 gca peak = 0.13336 (57) mri peak = 0.04569 (72) Left_Cerebellum_Cortex (8): linear fit = 1.29 x + 0.0 (22191 voxels, overlap=0.000) Left_Cerebellum_Cortex (8): linear fit = 1.29 x + 0.0 (22191 voxels, peak = 74), gca=73.8 gca peak = 0.13252 (56) mri peak = 0.04781 (70) Right_Cerebellum_Cortex (47): linear fit = 1.28 x + 0.0 (26040 voxels, overlap=0.002) Right_Cerebellum_Cortex (47): linear fit = 1.28 x + 0.0 (26040 voxels, peak = 72), gca=72.0 gca peak = 0.18181 (84) mri peak = 0.05759 (87) Left_Cerebellum_White_Matter (7): linear fit = 1.04 x + 0.0 (10841 voxels, overlap=0.985) Left_Cerebellum_White_Matter (7): linear fit = 1.04 x + 0.0 (10841 voxels, peak = 88), gca=87.8 gca peak = 0.20573 (83) mri peak = 0.07590 (84) Right_Cerebellum_White_Matter (46): linear fit = 1.01 x + 0.0 (9544 voxels, overlap=0.978) Right_Cerebellum_White_Matter (46): linear fit = 1.01 x + 0.0 (9544 voxels, peak = 84), gca=84.2 gca peak = 0.21969 (57) mri peak = 0.08777 (71) Left_Amygdala (18): linear fit = 1.23 x + 0.0 (477 voxels, overlap=0.195) Left_Amygdala (18): linear fit = 1.23 x + 0.0 (477 voxels, peak = 70), gca=69.8 gca peak = 0.39313 (56) mri peak = 0.10511 (70) Right_Amygdala (54): linear fit = 1.23 x + 0.0 (663 voxels, overlap=0.021) Right_Amygdala (54): linear fit = 1.23 x + 0.0 (663 voxels, peak = 69), gca=68.6 gca peak = 0.14181 (85) mri peak = 0.07546 (84) Left_Thalamus_Proper (10): linear fit = 0.98 x + 0.0 (4741 voxels, overlap=0.871) Left_Thalamus_Proper (10): linear fit = 0.98 x + 0.0 (4741 voxels, peak = 83), gca=82.9 gca peak = 0.11978 (83) mri peak = 0.08266 (80) Right_Thalamus_Proper (49): linear fit = 1.00 x + 0.0 (3387 voxels, overlap=0.926) Right_Thalamus_Proper (49): linear fit = 1.00 x + 0.0 (3387 voxels, peak = 83), gca=82.6 gca peak = 0.13399 (79) mri peak = 0.06552 (86) Left_Putamen (12): linear fit = 1.11 x + 0.0 (2568 voxels, overlap=0.602) Left_Putamen (12): linear fit = 1.11 x + 0.0 (2568 voxels, peak = 87), gca=87.3 gca peak = 0.14159 (79) mri peak = 0.07561 (88) Right_Putamen (51): linear fit = 1.14 x + 0.0 (2880 voxels, overlap=0.120) Right_Putamen (51): linear fit = 1.14 x + 0.0 (2880 voxels, peak = 90), gca=90.5 gca peak = 0.10025 (80) mri peak = 0.10728 (80) Brain_Stem (16): linear fit = 1.07 x + 0.0 (13579 voxels, overlap=0.401) Brain_Stem (16): linear fit = 1.07 x + 0.0 (13579 voxels, peak = 85), gca=85.2 gca peak = 0.13281 (86) mri peak = 0.10064 (91) Right_VentralDC (60): linear fit = 1.04 x + 0.0 (1251 voxels, overlap=0.663) Right_VentralDC (60): linear fit = 1.04 x + 0.0 (1251 voxels, peak = 90), gca=89.9 gca peak = 0.12801 (89) mri peak = 0.09843 (92) Left_VentralDC (28): linear fit = 1.02 x + 0.0 (1431 voxels, overlap=0.667) Left_VentralDC (28): linear fit = 1.02 x + 0.0 (1431 voxels, peak = 91), gca=91.2 gca peak = 0.20494 (23) mri peak = 0.15966 (21) Third_Ventricle (14): linear fit = 0.75 x + 0.0 (119 voxels, overlap=0.348) Third_Ventricle (14): linear fit = 0.75 x + 0.0 (119 voxels, peak = 17), gca=17.4 gca peak = 0.15061 (21) mri peak = 0.12611 (18) Fourth_Ventricle (15): linear fit = 0.93 x + 0.0 (566 voxels, overlap=0.781) Fourth_Ventricle (15): linear fit = 0.93 x + 0.0 (566 voxels, peak = 19), gca=19.4 gca peak Unknown = 0.94835 ( 0) gca peak Left_Inf_Lat_Vent = 0.18056 (32) gca peak Left_Thalamus = 0.64095 (94) gca peak CSF = 0.20999 (34) gca peak Left_Accumbens_area = 0.39030 (62) gca peak Left_undetermined = 0.95280 (25) gca peak Left_vessel = 0.67734 (53) gca peak Left_choroid_plexus = 0.09433 (44) gca peak Right_Inf_Lat_Vent = 0.23544 (26) gca peak Right_Accumbens_area = 0.30312 (64) gca peak Right_vessel = 0.46315 (51) gca peak Right_choroid_plexus = 0.14086 (44) gca peak Fifth_Ventricle = 0.51669 (36) gca peak WM_hypointensities = 0.09722 (76) gca peak non_WM_hypointensities = 0.11899 (47) gca peak Optic_Chiasm = 0.39033 (72) label assignment complete, 0 changed (0.00%) not using caudate to estimate GM means estimating mean gm scale to be 1.31 x + 0.0 estimating mean wm scale to be 1.03 x + 0.0 estimating mean csf scale to be 0.98 x + 0.0 saving intensity scales to talairach.label_intensities.txt **************** pass 1 of 1 ************************ enabling zero nodes setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.827, neg=0, invalid=762 0108: dt=90.090373, rms=0.808 (2.289%), neg=0, invalid=762 0109: dt=129.472000, rms=0.804 (0.432%), neg=0, invalid=762 0110: dt=517.888000, rms=0.793 (1.454%), neg=0, invalid=762 0111: dt=517.888000, rms=0.784 (1.147%), neg=0, invalid=762 0112: dt=129.472000, rms=0.783 (0.121%), neg=0, invalid=762 0113: dt=1183.744000, rms=0.778 (0.527%), neg=0, invalid=762 0114: dt=369.920000, rms=0.772 (0.782%), neg=0, invalid=762 0115: dt=129.472000, rms=0.771 (0.163%), neg=0, invalid=762 0116: dt=443.904000, rms=0.770 (0.140%), neg=0, invalid=762 0117: dt=129.472000, rms=0.769 (0.159%), neg=0, invalid=762 0118: dt=1183.744000, rms=0.766 (0.396%), neg=0, invalid=762 0119: dt=110.976000, rms=0.763 (0.358%), neg=0, invalid=762 0120: dt=369.920000, rms=0.762 (0.070%), neg=0, invalid=762 0121: dt=129.472000, rms=0.762 (0.108%), neg=0, invalid=762 0122: dt=887.808000, rms=0.760 (0.272%), neg=0, invalid=762 0123: dt=110.976000, rms=0.758 (0.171%), neg=0, invalid=762 0124: dt=517.888000, rms=0.757 (0.122%), neg=0, invalid=762 0125: dt=129.472000, rms=0.757 (0.084%), neg=0, invalid=762 0126: dt=887.808000, rms=0.755 (0.205%), neg=0, invalid=762 0127: dt=110.976000, rms=0.754 (0.144%), neg=0, invalid=762 0128: dt=1183.744000, rms=0.753 (0.168%), neg=0, invalid=762 0129: dt=129.472000, rms=0.752 (0.168%), neg=0, invalid=762 0130: dt=369.920000, rms=0.751 (0.084%), neg=0, invalid=762 0131: dt=129.472000, rms=0.750 (0.077%), neg=0, invalid=762 0132: dt=517.888000, rms=0.750 (0.066%), neg=0, invalid=762 0133: dt=129.472000, rms=0.749 (0.082%), neg=0, invalid=762 0134: dt=517.888000, rms=0.749 (0.072%), neg=0, invalid=762 0135: dt=129.472000, rms=0.748 (0.078%), neg=0, invalid=762 0136: dt=517.888000, rms=0.748 (0.059%), neg=0, invalid=762 0137: dt=129.472000, rms=0.747 (0.078%), neg=0, invalid=762 0138: dt=517.888000, rms=0.747 (0.059%), neg=0, invalid=762 0139: dt=129.472000, rms=0.746 (0.075%), neg=0, invalid=762 0140: dt=443.904000, rms=0.746 (0.052%), neg=0, invalid=762 0141: dt=129.472000, rms=0.745 (0.058%), neg=0, invalid=762 0142: dt=517.888000, rms=0.745 (0.066%), neg=0, invalid=762 0143: dt=129.472000, rms=0.744 (0.060%), neg=0, invalid=762 0144: dt=517.888000, rms=0.744 (0.061%), neg=0, invalid=762 0145: dt=129.472000, rms=0.743 (0.056%), neg=0, invalid=762 0146: dt=517.888000, rms=0.743 (0.062%), neg=0, invalid=762 0147: dt=129.472000, rms=0.743 (0.052%), neg=0, invalid=762 0148: dt=517.888000, rms=0.742 (0.061%), neg=0, invalid=762 0149: dt=129.472000, rms=0.742 (0.050%), neg=0, invalid=762 0150: dt=129.472000, rms=0.742 (0.021%), neg=0, invalid=762 0151: dt=129.472000, rms=0.741 (0.038%), neg=0, invalid=762 0152: dt=129.472000, rms=0.741 (0.060%), neg=0, invalid=762 0153: dt=129.472000, rms=0.740 (0.073%), neg=0, invalid=762 0154: dt=129.472000, rms=0.740 (0.084%), neg=0, invalid=762 0155: dt=129.472000, rms=0.739 (0.094%), neg=0, invalid=762 0156: dt=129.472000, rms=0.738 (0.099%), neg=0, invalid=762 0157: dt=129.472000, rms=0.738 (0.108%), neg=0, invalid=762 0158: dt=129.472000, rms=0.737 (0.110%), neg=0, invalid=762 0159: dt=129.472000, rms=0.736 (0.112%), neg=0, invalid=762 0160: dt=129.472000, rms=0.735 (0.110%), neg=0, invalid=762 0161: dt=129.472000, rms=0.734 (0.104%), neg=0, invalid=762 0162: dt=129.472000, rms=0.734 (0.108%), neg=0, invalid=762 0163: dt=129.472000, rms=0.733 (0.114%), neg=0, invalid=762 0164: dt=129.472000, rms=0.732 (0.110%), neg=0, invalid=762 0165: dt=129.472000, rms=0.731 (0.109%), neg=0, invalid=762 0166: dt=129.472000, rms=0.730 (0.105%), neg=0, invalid=762 0167: dt=129.472000, rms=0.730 (0.104%), neg=0, invalid=762 0168: dt=129.472000, rms=0.729 (0.100%), neg=0, invalid=762 0169: dt=129.472000, rms=0.728 (0.095%), neg=0, invalid=762 0170: dt=129.472000, rms=0.727 (0.095%), neg=0, invalid=762 0171: dt=129.472000, rms=0.727 (0.091%), neg=0, invalid=762 0172: dt=129.472000, rms=0.726 (0.092%), neg=0, invalid=762 0173: dt=129.472000, rms=0.725 (0.091%), neg=0, invalid=762 0174: dt=129.472000, rms=0.725 (0.091%), neg=0, invalid=762 0175: dt=129.472000, rms=0.724 (0.083%), neg=0, invalid=762 0176: dt=129.472000, rms=0.724 (0.080%), neg=0, invalid=762 0177: dt=129.472000, rms=0.723 (0.076%), neg=0, invalid=762 0178: dt=129.472000, rms=0.722 (0.078%), neg=0, invalid=762 0179: dt=129.472000, rms=0.722 (0.080%), neg=0, invalid=762 0180: dt=129.472000, rms=0.721 (0.079%), neg=0, invalid=762 0181: dt=129.472000, rms=0.721 (0.072%), neg=0, invalid=762 0182: dt=129.472000, rms=0.720 (0.068%), neg=0, invalid=762 0183: dt=129.472000, rms=0.720 (0.064%), neg=0, invalid=762 0184: dt=129.472000, rms=0.719 (0.065%), neg=0, invalid=762 0185: dt=129.472000, rms=0.719 (0.057%), neg=0, invalid=762 0186: dt=129.472000, rms=0.719 (0.064%), neg=0, invalid=762 0187: dt=129.472000, rms=0.718 (0.058%), neg=0, invalid=762 0188: dt=129.472000, rms=0.718 (0.054%), neg=0, invalid=762 0189: dt=129.472000, rms=0.717 (0.056%), neg=0, invalid=762 0190: dt=129.472000, rms=0.717 (0.054%), neg=0, invalid=762 0191: dt=129.472000, rms=0.717 (0.052%), neg=0, invalid=762 0192: dt=129.472000, rms=0.716 (0.053%), neg=0, invalid=762 0193: dt=129.472000, rms=0.716 (0.052%), neg=0, invalid=762 0194: dt=129.472000, rms=0.715 (0.051%), neg=0, invalid=762 0195: dt=129.472000, rms=0.715 (0.049%), neg=0, invalid=762 0196: dt=129.472000, rms=0.715 (0.049%), neg=0, invalid=762 0197: dt=129.472000, rms=0.714 (0.047%), neg=0, invalid=762 0198: dt=129.472000, rms=0.714 (0.046%), neg=0, invalid=762 0199: dt=129.472000, rms=0.714 (0.043%), neg=0, invalid=762 0200: dt=129.472000, rms=0.713 (0.039%), neg=0, invalid=762 0201: dt=129.472000, rms=0.713 (0.036%), neg=0, invalid=762 0202: dt=129.472000, rms=0.713 (0.036%), neg=0, invalid=762 0203: dt=129.472000, rms=0.713 (0.036%), neg=0, invalid=762 0204: dt=129.472000, rms=0.712 (0.035%), neg=0, invalid=762 0205: dt=129.472000, rms=0.712 (0.035%), neg=0, invalid=762 0206: dt=129.472000, rms=0.712 (0.035%), neg=0, invalid=762 0207: dt=129.472000, rms=0.712 (0.034%), neg=0, invalid=762 0208: dt=129.472000, rms=0.712 (0.032%), neg=0, invalid=762 0209: dt=129.472000, rms=0.711 (0.035%), neg=0, invalid=762 0210: dt=129.472000, rms=0.711 (0.026%), neg=0, invalid=762 0211: dt=129.472000, rms=0.711 (0.031%), neg=0, invalid=762 0212: dt=129.472000, rms=0.711 (0.034%), neg=0, invalid=762 0213: dt=129.472000, rms=0.710 (0.024%), neg=0, invalid=762 0214: dt=129.472000, rms=0.710 (0.028%), neg=0, invalid=762 0215: dt=129.472000, rms=0.710 (0.034%), neg=0, invalid=762 0216: dt=129.472000, rms=0.710 (0.028%), neg=0, invalid=762 0217: dt=129.472000, rms=0.710 (0.023%), neg=0, invalid=762 0218: dt=129.472000, rms=0.709 (0.033%), neg=0, invalid=762 0219: dt=129.472000, rms=0.709 (0.020%), neg=0, invalid=762 0220: dt=129.472000, rms=0.709 (0.028%), neg=0, invalid=762 0221: dt=129.472000, rms=0.709 (0.019%), neg=0, invalid=762 0222: dt=129.472000, rms=0.709 (0.023%), neg=0, invalid=762 0223: dt=129.472000, rms=0.709 (0.026%), neg=0, invalid=762 0224: dt=129.472000, rms=0.708 (0.026%), neg=0, invalid=762 0225: dt=129.472000, rms=0.708 (0.023%), neg=0, invalid=762 0226: dt=129.472000, rms=0.708 (0.022%), neg=0, invalid=762 0227: dt=517.888000, rms=0.708 (0.005%), neg=0, invalid=762 0228: dt=517.888000, rms=0.708 (-0.036%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.709, neg=0, invalid=762 0229: dt=221.952000, rms=0.707 (0.227%), neg=0, invalid=762 0230: dt=369.920000, rms=0.707 (0.096%), neg=0, invalid=762 0231: dt=92.480000, rms=0.706 (0.013%), neg=0, invalid=762 0232: dt=92.480000, rms=0.706 (0.008%), neg=0, invalid=762 0233: dt=92.480000, rms=0.706 (0.010%), neg=0, invalid=762 0234: dt=92.480000, rms=0.706 (0.019%), neg=0, invalid=762 0235: dt=92.480000, rms=0.706 (0.030%), neg=0, invalid=762 0236: dt=92.480000, rms=0.706 (0.033%), neg=0, invalid=762 0237: dt=92.480000, rms=0.706 (0.030%), neg=0, invalid=762 0238: dt=92.480000, rms=0.705 (0.028%), neg=0, invalid=762 0239: dt=92.480000, rms=0.705 (0.023%), neg=0, invalid=762 0240: dt=92.480000, rms=0.705 (0.019%), neg=0, invalid=762 0241: dt=517.888000, rms=0.705 (0.025%), neg=0, invalid=762 0242: dt=55.488000, rms=0.705 (-0.000%), neg=0, invalid=762 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.709, neg=0, invalid=762 0243: dt=145.152000, rms=0.701 (1.049%), neg=0, invalid=762 0244: dt=331.776000, rms=0.689 (1.728%), neg=0, invalid=762 0245: dt=73.876543, rms=0.683 (0.898%), neg=0, invalid=762 0246: dt=36.288000, rms=0.681 (0.201%), neg=0, invalid=762 0247: dt=9.072000, rms=0.681 (0.048%), neg=0, invalid=762 0248: dt=9.072000, rms=0.681 (0.044%), neg=0, invalid=762 0249: dt=1.134000, rms=0.681 (0.006%), neg=0, invalid=762 0250: dt=0.567000, rms=0.681 (0.003%), neg=0, invalid=762 0251: dt=0.141750, rms=0.681 (0.001%), neg=0, invalid=762 0252: dt=0.141750, rms=0.681 (0.001%), neg=0, invalid=762 0253: dt=0.017719, rms=0.681 (0.000%), neg=0, invalid=762 0254: dt=0.004430, rms=0.681 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.682, neg=0, invalid=762 0255: dt=170.666667, rms=0.677 (0.701%), neg=0, invalid=762 0256: dt=137.714286, rms=0.673 (0.636%), neg=0, invalid=762 0257: dt=92.421725, rms=0.670 (0.357%), neg=0, invalid=762 0258: dt=145.152000, rms=0.667 (0.446%), neg=0, invalid=762 0259: dt=124.416000, rms=0.666 (0.236%), neg=0, invalid=762 0260: dt=122.311111, rms=0.663 (0.334%), neg=0, invalid=762 0261: dt=93.159763, rms=0.662 (0.206%), neg=0, invalid=762 0262: dt=145.152000, rms=0.660 (0.308%), neg=0, invalid=762 0263: dt=103.680000, rms=0.659 (0.165%), neg=0, invalid=762 0264: dt=145.152000, rms=0.657 (0.254%), neg=0, invalid=762 0265: dt=79.058824, rms=0.656 (0.145%), neg=0, invalid=762 0266: dt=331.776000, rms=0.654 (0.342%), neg=0, invalid=762 0267: dt=69.527273, rms=0.652 (0.273%), neg=0, invalid=762 0268: dt=580.608000, rms=0.648 (0.596%), neg=0, invalid=762 0269: dt=71.452055, rms=0.647 (0.212%), neg=0, invalid=762 0270: dt=331.776000, rms=0.646 (0.210%), neg=0, invalid=762 0271: dt=36.288000, rms=0.645 (0.147%), neg=0, invalid=762 0272: dt=82.944000, rms=0.644 (0.074%), neg=0, invalid=762 0273: dt=145.152000, rms=0.643 (0.140%), neg=0, invalid=762 0274: dt=82.944000, rms=0.643 (0.058%), neg=0, invalid=762 0275: dt=145.152000, rms=0.642 (0.126%), neg=0, invalid=762 0276: dt=82.944000, rms=0.642 (0.057%), neg=0, invalid=762 0277: dt=145.152000, rms=0.641 (0.121%), neg=0, invalid=762 0278: dt=82.944000, rms=0.641 (0.054%), neg=0, invalid=762 0279: dt=145.152000, rms=0.640 (0.113%), neg=0, invalid=762 0280: dt=2.268000, rms=0.640 (-0.000%), neg=0, invalid=762 0281: dt=2.268000, rms=0.640 (0.003%), neg=0, invalid=762 0282: dt=2.268000, rms=0.640 (0.003%), neg=0, invalid=762 0283: dt=2.268000, rms=0.640 (0.005%), neg=0, invalid=762 0284: dt=2.268000, rms=0.640 (0.008%), neg=0, invalid=762 0285: dt=2.268000, rms=0.640 (0.009%), neg=0, invalid=762 0286: dt=2.268000, rms=0.640 (0.009%), neg=0, invalid=762 0287: dt=2.268000, rms=0.640 (0.009%), neg=0, invalid=762 0288: dt=2.268000, rms=0.640 (0.008%), neg=0, invalid=762 0289: dt=1.134000, rms=0.640 (0.002%), neg=0, invalid=762 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.650, neg=0, invalid=762 0290: dt=38.400000, rms=0.635 (2.257%), neg=0, invalid=762 0291: dt=11.200000, rms=0.632 (0.502%), neg=0, invalid=762 0292: dt=8.000000, rms=0.630 (0.336%), neg=0, invalid=762 0293: dt=0.700000, rms=0.629 (0.029%), neg=0, invalid=762 0294: dt=0.350000, rms=0.629 (0.014%), neg=0, invalid=762 0295: dt=0.087500, rms=0.629 (0.004%), neg=0, invalid=762 0296: dt=0.043750, rms=0.629 (0.002%), neg=0, invalid=762 0297: dt=0.031250, rms=0.629 (0.001%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.630, neg=0, invalid=762 0298: dt=11.200000, rms=0.627 (0.488%), neg=0, invalid=762 0299: dt=9.600000, rms=0.625 (0.287%), neg=0, invalid=762 0300: dt=0.700000, rms=0.625 (0.022%), neg=0, invalid=762 0301: dt=0.175000, rms=0.625 (0.006%), neg=0, invalid=762 0302: dt=0.087500, rms=0.625 (0.003%), neg=0, invalid=762 0303: dt=0.021875, rms=0.625 (0.001%), neg=0, invalid=762 0304: dt=0.010937, rms=0.625 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.654, neg=0, invalid=762 0305: dt=11.520000, rms=0.631 (3.649%), neg=0, invalid=762 0306: dt=1.008000, rms=0.630 (0.169%), neg=0, invalid=762 0307: dt=0.015750, rms=0.629 (0.003%), neg=0, invalid=762 0308: dt=0.003938, rms=0.629 (0.001%), neg=0, invalid=762 0309: dt=0.000492, rms=0.629 (0.000%), neg=0, invalid=762 0310: dt=0.000123, rms=0.629 (0.000%), neg=0, invalid=762 0311: dt=0.000000, rms=0.629 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.630, neg=0, invalid=762 0312: dt=0.000000, rms=0.629 (0.090%), neg=0, invalid=762 0313: dt=0.000000, rms=0.629 (0.000%), neg=0, invalid=762 0314: dt=0.000018, rms=0.629 (0.000%), neg=0, invalid=762 0315: dt=0.000009, rms=0.629 (0.000%), neg=0, invalid=762 0316: dt=0.000005, rms=0.629 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.684, neg=0, invalid=762 0317: dt=1.792000, rms=0.680 (0.643%), neg=0, invalid=762 0318: dt=4.096000, rms=0.677 (0.467%), neg=0, invalid=762 0319: dt=1.792000, rms=0.676 (0.094%), neg=0, invalid=762 0320: dt=1.792000, rms=0.676 (0.081%), neg=0, invalid=762 0321: dt=1.792000, rms=0.675 (0.064%), neg=0, invalid=762 0322: dt=5.120000, rms=0.675 (0.102%), neg=0, invalid=762 0323: dt=1.792000, rms=0.674 (0.034%), neg=0, invalid=762 0324: dt=1.792000, rms=0.674 (0.034%), neg=0, invalid=762 0325: dt=1.792000, rms=0.674 (0.054%), neg=0, invalid=762 0326: dt=1.792000, rms=0.673 (0.056%), neg=0, invalid=762 0327: dt=1.792000, rms=0.673 (0.033%), neg=0, invalid=762 0328: dt=1.792000, rms=0.673 (-0.022%), neg=0, invalid=762 0329: dt=5.120000, rms=0.673 (0.004%), neg=0, invalid=762 0330: dt=1.792000, rms=0.673 (0.049%), neg=0, invalid=762 0331: dt=5.120000, rms=0.672 (0.093%), neg=0, invalid=762 0332: dt=1.792000, rms=0.672 (0.018%), neg=0, invalid=762 0333: dt=1.792000, rms=0.672 (0.017%), neg=0, invalid=762 0334: dt=1.792000, rms=0.672 (0.036%), neg=0, invalid=762 0335: dt=1.792000, rms=0.671 (0.052%), neg=0, invalid=762 0336: dt=1.792000, rms=0.671 (0.059%), neg=0, invalid=762 0337: dt=1.792000, rms=0.671 (0.053%), neg=0, invalid=762 0338: dt=1.792000, rms=0.670 (0.037%), neg=0, invalid=762 0339: dt=1.792000, rms=0.670 (0.020%), neg=0, invalid=762 0340: dt=1.792000, rms=0.670 (0.006%), neg=0, invalid=762 0341: dt=0.000000, rms=0.670 (-0.002%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.671, neg=0, invalid=762 0342: dt=1.792000, rms=0.669 (0.197%), neg=0, invalid=762 0343: dt=5.120000, rms=0.669 (0.087%), neg=0, invalid=762 0344: dt=0.000000, rms=0.669 (0.000%), neg=0, invalid=762 0345: dt=0.100000, rms=0.669 (-0.001%), neg=0, invalid=762 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.646, neg=0, invalid=762 0346: dt=0.448000, rms=0.623 (3.516%), neg=0, invalid=762 0347: dt=0.448000, rms=0.614 (1.495%), neg=0, invalid=762 0348: dt=0.448000, rms=0.608 (0.869%), neg=0, invalid=762 0349: dt=0.448000, rms=0.605 (0.592%), neg=0, invalid=762 0350: dt=0.448000, rms=0.602 (0.446%), neg=0, invalid=762 0351: dt=0.448000, rms=0.600 (0.344%), neg=0, invalid=762 0352: dt=0.448000, rms=0.598 (0.283%), neg=0, invalid=762 0353: dt=0.448000, rms=0.597 (0.230%), neg=0, invalid=762 0354: dt=0.448000, rms=0.596 (0.199%), neg=0, invalid=762 0355: dt=0.448000, rms=0.595 (0.165%), neg=0, invalid=762 0356: dt=0.448000, rms=0.594 (0.147%), neg=0, invalid=762 0357: dt=0.448000, rms=0.593 (0.125%), neg=0, invalid=762 0358: dt=0.448000, rms=0.592 (0.115%), neg=0, invalid=762 0359: dt=0.448000, rms=0.592 (0.098%), neg=0, invalid=762 0360: dt=0.448000, rms=0.591 (0.092%), neg=0, invalid=762 0361: dt=0.448000, rms=0.591 (0.078%), neg=0, invalid=762 0362: dt=0.448000, rms=0.590 (0.076%), neg=0, invalid=762 0363: dt=0.448000, rms=0.590 (0.065%), neg=0, invalid=762 0364: dt=0.448000, rms=0.590 (0.064%), neg=0, invalid=762 0365: dt=0.448000, rms=0.589 (0.053%), neg=0, invalid=762 0366: dt=0.448000, rms=0.589 (0.054%), neg=0, invalid=762 0367: dt=0.448000, rms=0.589 (0.044%), neg=0, invalid=762 0368: dt=0.448000, rms=0.588 (0.046%), neg=0, invalid=762 0369: dt=0.448000, rms=0.588 (0.079%), neg=0, invalid=762 0370: dt=0.448000, rms=0.588 (0.035%), neg=0, invalid=762 0371: dt=0.448000, rms=0.587 (0.067%), neg=0, invalid=762 0372: dt=0.448000, rms=0.587 (0.031%), neg=0, invalid=762 0373: dt=0.448000, rms=0.587 (0.053%), neg=0, invalid=762 0374: dt=0.448000, rms=0.587 (0.026%), neg=0, invalid=762 0375: dt=0.448000, rms=0.586 (0.044%), neg=0, invalid=762 0376: dt=0.224000, rms=0.586 (0.011%), neg=0, invalid=762 0377: dt=0.224000, rms=0.586 (0.011%), neg=0, invalid=762 0378: dt=0.224000, rms=0.586 (0.020%), neg=0, invalid=762 0379: dt=0.224000, rms=0.586 (0.026%), neg=0, invalid=762 0380: dt=0.224000, rms=0.586 (0.033%), neg=0, invalid=762 0381: dt=0.224000, rms=0.586 (0.037%), neg=0, invalid=762 0382: dt=0.224000, rms=0.585 (0.039%), neg=0, invalid=762 0383: dt=0.224000, rms=0.585 (0.040%), neg=0, invalid=762 0384: dt=0.224000, rms=0.585 (0.040%), neg=0, invalid=762 0385: dt=0.224000, rms=0.585 (0.038%), neg=0, invalid=762 0386: dt=0.224000, rms=0.584 (0.037%), neg=0, invalid=762 0387: dt=0.224000, rms=0.584 (0.034%), neg=0, invalid=762 0388: dt=0.224000, rms=0.584 (0.030%), neg=0, invalid=762 0389: dt=0.224000, rms=0.584 (0.027%), neg=0, invalid=762 0390: dt=0.224000, rms=0.584 (0.026%), neg=0, invalid=762 0391: dt=0.224000, rms=0.584 (0.022%), neg=0, invalid=762 0392: dt=0.224000, rms=0.584 (0.000%), neg=0, invalid=762 0393: dt=0.096000, rms=0.584 (-0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.584, neg=0, invalid=762 0394: dt=0.448000, rms=0.578 (0.966%), neg=0, invalid=762 0395: dt=0.448000, rms=0.578 (0.081%), neg=0, invalid=762 0396: dt=0.005000, rms=0.578 (-0.001%), neg=0, invalid=762 0397: dt=0.005000, rms=0.578 (0.000%), neg=0, invalid=762 0398: dt=0.005000, rms=0.578 (-0.000%), neg=0, invalid=762 label assignment complete, 0 changed (0.00%) ********************* ALLOWING NEGATIVE NODES IN DEFORMATION******************************** **************** pass 1 of 1 ************************ enabling zero nodes setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.573, neg=0, invalid=762 0399: dt=6.936000, rms=0.573 (0.081%), neg=0, invalid=762 0400: dt=0.505750, rms=0.573 (0.000%), neg=0, invalid=762 0401: dt=0.505750, rms=0.573 (0.000%), neg=0, invalid=762 0402: dt=0.505750, rms=0.573 (-0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.573, neg=0, invalid=762 0403: dt=129.472000, rms=0.573 (0.168%), neg=0, invalid=762 0404: dt=129.472000, rms=0.572 (0.043%), neg=0, invalid=762 0405: dt=129.472000, rms=0.572 (0.043%), neg=0, invalid=762 0406: dt=129.472000, rms=0.572 (0.052%), neg=0, invalid=762 0407: dt=129.472000, rms=0.572 (0.022%), neg=0, invalid=762 0408: dt=129.472000, rms=0.571 (0.076%), neg=0, invalid=762 0409: dt=129.472000, rms=0.571 (0.043%), neg=0, invalid=762 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.571, neg=0, invalid=762 0410: dt=36.288000, rms=0.570 (0.256%), neg=0, invalid=762 0411: dt=77.531429, rms=0.569 (0.211%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0412: dt=77.531429, rms=0.567 (0.279%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0413: dt=77.531429, rms=0.565 (0.456%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 1 iterations, nbhd size=0, neg = 0 0414: dt=77.531429, rms=0.564 (0.191%), neg=0, invalid=762 iter 0, gcam->neg = 11 after 2 iterations, nbhd size=0, neg = 0 0415: dt=77.531429, rms=0.563 (0.136%), neg=0, invalid=762 iter 0, gcam->neg = 13 after 4 iterations, nbhd size=0, neg = 0 0416: dt=77.531429, rms=0.562 (0.138%), neg=0, invalid=762 iter 0, gcam->neg = 21 after 9 iterations, nbhd size=1, neg = 0 0417: dt=77.531429, rms=0.560 (0.270%), neg=0, invalid=762 iter 0, gcam->neg = 15 after 3 iterations, nbhd size=0, neg = 0 0418: dt=77.531429, rms=0.559 (0.201%), neg=0, invalid=762 iter 0, gcam->neg = 15 after 10 iterations, nbhd size=1, neg = 0 0419: dt=77.531429, rms=0.558 (0.161%), neg=0, invalid=762 iter 0, gcam->neg = 8 after 3 iterations, nbhd size=0, neg = 0 0420: dt=77.531429, rms=0.558 (0.114%), neg=0, invalid=762 iter 0, gcam->neg = 5 after 2 iterations, nbhd size=0, neg = 0 0421: dt=77.531429, rms=0.557 (0.162%), neg=0, invalid=762 iter 0, gcam->neg = 12 after 14 iterations, nbhd size=1, neg = 0 0422: dt=77.531429, rms=0.556 (0.180%), neg=0, invalid=762 iter 0, gcam->neg = 12 after 2 iterations, nbhd size=0, neg = 0 0423: dt=77.531429, rms=0.555 (0.174%), neg=0, invalid=762 iter 0, gcam->neg = 7 after 9 iterations, nbhd size=1, neg = 0 0424: dt=77.531429, rms=0.554 (0.161%), neg=0, invalid=762 iter 0, gcam->neg = 4 after 3 iterations, nbhd size=0, neg = 0 0425: dt=77.531429, rms=0.553 (0.142%), neg=0, invalid=762 iter 0, gcam->neg = 6 after 9 iterations, nbhd size=1, neg = 0 0426: dt=77.531429, rms=0.553 (0.089%), neg=0, invalid=762 iter 0, gcam->neg = 7 after 1 iterations, nbhd size=0, neg = 0 0427: dt=77.531429, rms=0.552 (0.066%), neg=0, invalid=762 0428: dt=145.152000, rms=0.551 (0.216%), neg=0, invalid=762 0429: dt=36.288000, rms=0.551 (0.066%), neg=0, invalid=762 0430: dt=36.288000, rms=0.551 (0.021%), neg=0, invalid=762 0431: dt=36.288000, rms=0.550 (0.044%), neg=0, invalid=762 0432: dt=36.288000, rms=0.550 (0.056%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0433: dt=36.288000, rms=0.550 (0.062%), neg=0, invalid=762 0434: dt=36.288000, rms=0.549 (0.064%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 1 iterations, nbhd size=0, neg = 0 0435: dt=36.288000, rms=0.549 (0.063%), neg=0, invalid=762 0436: dt=36.288000, rms=0.549 (0.060%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.549, neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0437: dt=133.430303, rms=0.546 (0.602%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0438: dt=66.844444, rms=0.545 (0.179%), neg=0, invalid=762 0439: dt=66.844444, rms=0.545 (0.063%), neg=0, invalid=762 0440: dt=66.844444, rms=0.544 (0.127%), neg=0, invalid=762 0441: dt=66.844444, rms=0.543 (0.178%), neg=0, invalid=762 0442: dt=66.844444, rms=0.542 (0.132%), neg=0, invalid=762 0443: dt=66.844444, rms=0.542 (0.111%), neg=0, invalid=762 0444: dt=66.844444, rms=0.541 (0.089%), neg=0, invalid=762 0445: dt=82.944000, rms=0.541 (0.076%), neg=0, invalid=762 0446: dt=82.944000, rms=0.541 (0.000%), neg=0, invalid=762 0447: dt=82.944000, rms=0.540 (0.105%), neg=0, invalid=762 0448: dt=82.944000, rms=0.540 (0.077%), neg=0, invalid=762 0449: dt=82.944000, rms=0.539 (0.081%), neg=0, invalid=762 0450: dt=82.944000, rms=0.539 (0.054%), neg=0, invalid=762 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.543, neg=0, invalid=762 iter 0, gcam->neg = 4 after 3 iterations, nbhd size=0, neg = 0 0451: dt=50.346667, rms=0.539 (0.808%), neg=0, invalid=762 iter 0, gcam->neg = 28 after 3 iterations, nbhd size=0, neg = 0 0452: dt=66.666667, rms=0.534 (0.941%), neg=0, invalid=762 iter 0, gcam->neg = 3 after 2 iterations, nbhd size=0, neg = 0 0453: dt=31.157895, rms=0.530 (0.578%), neg=0, invalid=762 iter 0, gcam->neg = 51 after 14 iterations, nbhd size=1, neg = 0 0454: dt=98.750524, rms=0.527 (0.686%), neg=0, invalid=762 iter 0, gcam->neg = 8 after 12 iterations, nbhd size=1, neg = 0 0455: dt=32.000000, rms=0.524 (0.510%), neg=0, invalid=762 iter 0, gcam->neg = 6 after 3 iterations, nbhd size=0, neg = 0 0456: dt=44.800000, rms=0.522 (0.314%), neg=0, invalid=762 iter 0, gcam->neg = 6 after 0 iterations, nbhd size=0, neg = 0 0457: dt=44.800000, rms=0.521 (0.236%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 7 iterations, nbhd size=1, neg = 0 0458: dt=44.800000, rms=0.520 (0.168%), neg=0, invalid=762 iter 0, gcam->neg = 3 after 9 iterations, nbhd size=1, neg = 0 0459: dt=44.800000, rms=0.518 (0.442%), neg=0, invalid=762 iter 0, gcam->neg = 20 after 11 iterations, nbhd size=1, neg = 0 0460: dt=44.800000, rms=0.516 (0.381%), neg=0, invalid=762 iter 0, gcam->neg = 21 after 13 iterations, nbhd size=1, neg = 0 0461: dt=44.800000, rms=0.513 (0.525%), neg=0, invalid=762 iter 0, gcam->neg = 33 after 13 iterations, nbhd size=1, neg = 0 0462: dt=44.800000, rms=0.511 (0.374%), neg=0, invalid=762 iter 0, gcam->neg = 34 after 15 iterations, nbhd size=1, neg = 0 0463: dt=44.800000, rms=0.509 (0.479%), neg=0, invalid=762 iter 0, gcam->neg = 48 after 16 iterations, nbhd size=1, neg = 0 0464: dt=44.800000, rms=0.507 (0.311%), neg=0, invalid=762 iter 0, gcam->neg = 62 after 16 iterations, nbhd size=1, neg = 0 0465: dt=44.800000, rms=0.506 (0.252%), neg=0, invalid=762 iter 0, gcam->neg = 60 after 16 iterations, nbhd size=1, neg = 0 0466: dt=44.800000, rms=0.505 (0.229%), neg=0, invalid=762 iter 0, gcam->neg = 60 after 20 iterations, nbhd size=1, neg = 0 0467: dt=44.800000, rms=0.504 (0.154%), neg=0, invalid=762 iter 0, gcam->neg = 66 after 18 iterations, nbhd size=1, neg = 0 0468: dt=44.800000, rms=0.503 (0.176%), neg=0, invalid=762 iter 0, gcam->neg = 131 after 23 iterations, nbhd size=1, neg = 0 0469: dt=44.800000, rms=0.503 (0.088%), neg=0, invalid=762 iter 0, gcam->neg = 166 after 15 iterations, nbhd size=1, neg = 0 0470: dt=44.800000, rms=0.502 (0.270%), neg=0, invalid=762 iter 0, gcam->neg = 217 after 23 iterations, nbhd size=1, neg = 0 0471: dt=44.800000, rms=0.501 (-0.047%), neg=0, invalid=762 iter 0, gcam->neg = 8 after 14 iterations, nbhd size=1, neg = 0 0472: dt=19.200000, rms=0.501 (0.039%), neg=0, invalid=762 iter 0, gcam->neg = 5 after 12 iterations, nbhd size=1, neg = 0 0473: dt=38.400000, rms=0.501 (0.005%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.502, neg=0, invalid=762 0474: dt=44.800000, rms=0.499 (0.584%), neg=0, invalid=762 0475: dt=44.800000, rms=0.498 (0.083%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 0 iterations, nbhd size=0, neg = 0 0476: dt=44.800000, rms=0.498 (0.082%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 2 iterations, nbhd size=0, neg = 0 0477: dt=44.800000, rms=0.498 (0.017%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 0 iterations, nbhd size=0, neg = 0 0478: dt=44.800000, rms=0.498 (-0.038%), neg=0, invalid=762 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.515, neg=0, invalid=762 0479: dt=0.000090, rms=0.514 (0.098%), neg=0, invalid=762 0480: dt=0.000000, rms=0.514 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.515, neg=0, invalid=762 0481: dt=0.000000, rms=0.514 (0.098%), neg=0, invalid=762 0482: dt=0.000000, rms=0.514 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.548, neg=0, invalid=762 0483: dt=1.792000, rms=0.542 (0.995%), neg=0, invalid=762 0484: dt=0.448000, rms=0.542 (0.039%), neg=0, invalid=762 0485: dt=0.448000, rms=0.542 (-0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.543, neg=0, invalid=762 0486: dt=1.024000, rms=0.541 (0.233%), neg=0, invalid=762 0487: dt=0.448000, rms=0.541 (0.020%), neg=0, invalid=762 0488: dt=0.448000, rms=0.541 (0.003%), neg=0, invalid=762 0489: dt=0.448000, rms=0.541 (-0.055%), neg=0, invalid=762 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.515, neg=0, invalid=762 iter 0, gcam->neg = 1871 after 16 iterations, nbhd size=1, neg = 0 0490: dt=2.659726, rms=0.469 (8.995%), neg=0, invalid=762 0491: dt=0.200168, rms=0.467 (0.359%), neg=0, invalid=762 0492: dt=0.016000, rms=0.467 (0.003%), neg=0, invalid=762 0493: dt=0.016000, rms=0.467 (-0.002%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.468, neg=0, invalid=762 0494: dt=0.096000, rms=0.467 (0.152%), neg=0, invalid=762 0495: dt=0.000000, rms=0.467 (0.002%), neg=0, invalid=762 0496: dt=0.050000, rms=0.467 (-0.016%), neg=0, invalid=762 label assignment complete, 0 changed (0.00%) label assignment complete, 0 changed (0.00%) ***************** morphing with label term set to 0 ******************************* **************** pass 1 of 1 ************************ enabling zero nodes setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.448, neg=0, invalid=762 0497: dt=0.000000, rms=0.448 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.448, neg=0, invalid=762 0498: dt=32.368000, rms=0.448 (0.005%), neg=0, invalid=762 0499: dt=73.984000, rms=0.448 (0.004%), neg=0, invalid=762 0500: dt=73.984000, rms=0.448 (0.005%), neg=0, invalid=762 0501: dt=73.984000, rms=0.448 (0.003%), neg=0, invalid=762 0502: dt=73.984000, rms=0.448 (-0.002%), neg=0, invalid=762 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.448, neg=0, invalid=762 0503: dt=2.268000, rms=0.448 (0.001%), neg=0, invalid=762 0504: dt=1.620000, rms=0.448 (0.000%), neg=0, invalid=762 0505: dt=1.620000, rms=0.448 (-0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.448, neg=0, invalid=762 0506: dt=145.152000, rms=0.447 (0.199%), neg=0, invalid=762 0507: dt=145.152000, rms=0.446 (0.163%), neg=0, invalid=762 0508: dt=145.152000, rms=0.446 (0.014%), neg=0, invalid=762 0509: dt=145.152000, rms=0.446 (0.149%), neg=0, invalid=762 0510: dt=145.152000, rms=0.445 (0.187%), neg=0, invalid=762 0511: dt=145.152000, rms=0.445 (0.046%), neg=0, invalid=762 0512: dt=145.152000, rms=0.444 (0.170%), neg=0, invalid=762 0513: dt=145.152000, rms=0.444 (0.029%), neg=0, invalid=762 0514: dt=145.152000, rms=0.443 (0.140%), neg=0, invalid=762 0515: dt=145.152000, rms=0.443 (0.093%), neg=0, invalid=762 0516: dt=145.152000, rms=0.442 (0.063%), neg=0, invalid=762 0517: dt=36.288000, rms=0.442 (0.040%), neg=0, invalid=762 0518: dt=36.288000, rms=0.442 (0.011%), neg=0, invalid=762 0519: dt=36.288000, rms=0.442 (0.014%), neg=0, invalid=762 0520: dt=36.288000, rms=0.442 (0.016%), neg=0, invalid=762 0521: dt=36.288000, rms=0.442 (0.016%), neg=0, invalid=762 0522: dt=36.288000, rms=0.442 (0.015%), neg=0, invalid=762 0523: dt=36.288000, rms=0.442 (0.013%), neg=0, invalid=762 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.443, neg=0, invalid=762 0524: dt=23.506173, rms=0.443 (0.145%), neg=0, invalid=762 0525: dt=44.800000, rms=0.442 (0.131%), neg=0, invalid=762 iter 0, gcam->neg = 3 after 8 iterations, nbhd size=1, neg = 0 0526: dt=44.800000, rms=0.441 (0.220%), neg=0, invalid=762 iter 0, gcam->neg = 5 after 8 iterations, nbhd size=1, neg = 0 0527: dt=44.800000, rms=0.440 (0.234%), neg=0, invalid=762 iter 0, gcam->neg = 23 after 18 iterations, nbhd size=1, neg = 0 0528: dt=44.800000, rms=0.440 (0.063%), neg=0, invalid=762 iter 0, gcam->neg = 63 after 23 iterations, nbhd size=1, neg = 0 0529: dt=44.800000, rms=0.440 (-0.083%), neg=0, invalid=762 iter 0, gcam->neg = 122 after 19 iterations, nbhd size=1, neg = 0 0530: dt=153.600000, rms=0.438 (0.281%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0531: dt=38.400000, rms=0.438 (0.095%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 2 iterations, nbhd size=0, neg = 0 0532: dt=38.400000, rms=0.438 (0.045%), neg=0, invalid=762 iter 0, gcam->neg = 7 after 12 iterations, nbhd size=1, neg = 0 0533: dt=38.400000, rms=0.438 (-0.024%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.438, neg=0, invalid=762 iter 0, gcam->neg = 2 after 8 iterations, nbhd size=1, neg = 0 0534: dt=63.051852, rms=0.435 (0.719%), neg=0, invalid=762 0535: dt=38.400000, rms=0.434 (0.264%), neg=0, invalid=762 0536: dt=44.800000, rms=0.433 (0.152%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 1 iterations, nbhd size=0, neg = 0 0537: dt=44.800000, rms=0.432 (0.090%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 1 iterations, nbhd size=0, neg = 0 0538: dt=44.800000, rms=0.432 (0.145%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 2 iterations, nbhd size=0, neg = 0 0539: dt=44.800000, rms=0.431 (0.155%), neg=0, invalid=762 iter 0, gcam->neg = 7 after 10 iterations, nbhd size=1, neg = 0 0540: dt=44.800000, rms=0.431 (0.091%), neg=0, invalid=762 iter 0, gcam->neg = 4 after 8 iterations, nbhd size=1, neg = 0 0541: dt=44.800000, rms=0.430 (0.120%), neg=0, invalid=762 iter 0, gcam->neg = 7 after 4 iterations, nbhd size=0, neg = 0 0542: dt=44.800000, rms=0.430 (0.162%), neg=0, invalid=762 iter 0, gcam->neg = 7 after 12 iterations, nbhd size=1, neg = 0 0543: dt=44.800000, rms=0.429 (0.160%), neg=0, invalid=762 iter 0, gcam->neg = 6 after 11 iterations, nbhd size=1, neg = 0 0544: dt=44.800000, rms=0.428 (0.136%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 1 iterations, nbhd size=0, neg = 0 0545: dt=44.800000, rms=0.428 (0.128%), neg=0, invalid=762 iter 0, gcam->neg = 7 after 10 iterations, nbhd size=1, neg = 0 0546: dt=44.800000, rms=0.427 (0.137%), neg=0, invalid=762 iter 0, gcam->neg = 21 after 16 iterations, nbhd size=1, neg = 0 0547: dt=44.800000, rms=0.427 (0.078%), neg=0, invalid=762 iter 0, gcam->neg = 54 after 20 iterations, nbhd size=1, neg = 0 0548: dt=44.800000, rms=0.427 (0.003%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 1 iterations, nbhd size=0, neg = 0 0549: dt=44.800000, rms=0.427 (0.054%), neg=0, invalid=762 iter 0, gcam->neg = 9 after 11 iterations, nbhd size=1, neg = 0 0550: dt=102.400000, rms=0.426 (0.047%), neg=0, invalid=762 iter 0, gcam->neg = 9 after 13 iterations, nbhd size=1, neg = 0 0551: dt=102.400000, rms=0.426 (-0.179%), neg=0, invalid=762 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.433, neg=0, invalid=762 0552: dt=0.000176, rms=0.433 (0.000%), neg=0, invalid=762 0553: dt=0.000000, rms=0.433 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.433, neg=0, invalid=762 0554: dt=0.000000, rms=0.433 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.447, neg=0, invalid=762 0555: dt=0.000000, rms=0.447 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.447, neg=0, invalid=762 0556: dt=0.096000, rms=0.447 (0.002%), neg=0, invalid=762 0557: dt=0.000050, rms=0.447 (0.000%), neg=0, invalid=762 0558: dt=0.000050, rms=0.447 (-0.000%), neg=0, invalid=762 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.424, neg=0, invalid=762 iter 0, gcam->neg = 1173 after 18 iterations, nbhd size=1, neg = 0 0559: dt=1.446192, rms=0.409 (3.493%), neg=0, invalid=762 0560: dt=0.000013, rms=0.409 (0.000%), neg=0, invalid=762 0561: dt=0.000013, rms=0.409 (-0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.409, neg=0, invalid=762 0562: dt=0.028000, rms=0.409 (0.011%), neg=0, invalid=762 0563: dt=0.016000, rms=0.409 (0.002%), neg=0, invalid=762 0564: dt=0.016000, rms=0.409 (-0.001%), neg=0, invalid=762 writing output transformation to transforms/talairach.m3z... GCAMwrite mri_ca_register took 3 hours, 7 minutes and 42 seconds. mri_ca_register utimesec 11243.621879 mri_ca_register stimesec 18.927186 mri_ca_register ru_maxrss 1341520 mri_ca_register ru_ixrss 0 mri_ca_register ru_idrss 0 mri_ca_register ru_isrss 0 mri_ca_register ru_minflt 18244078 mri_ca_register ru_majflt 0 mri_ca_register ru_nswap 0 mri_ca_register ru_inblock 0 mri_ca_register ru_oublock 62528 mri_ca_register ru_msgsnd 0 mri_ca_register ru_msgrcv 0 mri_ca_register ru_nsignals 0 mri_ca_register ru_nvcsw 389 mri_ca_register ru_nivcsw 7467 FSRUNTIME@ mri_ca_register 3.1284 hours 1 threads #-------------------------------------- #@# SubCort Seg vr mrt 22 21:14:20 CET 2019 mri_ca_label -relabel_unlikely 9 .3 -prior 0.5 -align norm.mgz transforms/talairach.m3z /opt/freesurfer/6.0/average/RB_all_2016-05-10.vc700.gca aseg.auto_noCCseg.mgz sysname Linux hostname dccn-c051.dccn.nl machine x86_64 setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri mri_ca_label -relabel_unlikely 9 .3 -prior 0.5 -align norm.mgz transforms/talairach.m3z /opt/freesurfer/6.0/average/RB_all_2016-05-10.vc700.gca aseg.auto_noCCseg.mgz == Number of threads available to mri_ca_label for OpenMP = 1 == relabeling unlikely voxels with window_size = 9 and prior threshold 0.30 using Gibbs prior factor = 0.500 renormalizing sequences with structure alignment, equivalent to: -renormalize -renormalize_mean 0.500 -regularize 0.500 reading 1 input volumes reading classifier array from /opt/freesurfer/6.0/average/RB_all_2016-05-10.vc700.gca reading input volume from norm.mgz average std[0] = 7.3 reading transform from transforms/talairach.m3z setting orig areas to linear transform determinant scaled 7.29 Atlas used for the 3D morph was /opt/freesurfer/6.0/average/RB_all_2016-05-10.vc700.gca average std = 7.3 using min determinant for regularization = 5.3 0 singular and 0 ill-conditioned covariance matrices regularized labeling volume... renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.16259 (20) mri peak = 0.12794 (21) Left_Lateral_Ventricle (4): linear fit = 1.02 x + 0.0 (13392 voxels, overlap=0.929) Left_Lateral_Ventricle (4): linear fit = 1.02 x + 0.0 (13392 voxels, peak = 20), gca=20.5 gca peak = 0.17677 (13) mri peak = 0.13238 (21) Right_Lateral_Ventricle (43): linear fit = 1.42 x + 0.0 (13734 voxels, overlap=0.659) Right_Lateral_Ventricle (43): linear fit = 1.42 x + 0.0 (13734 voxels, peak = 19), gca=18.5 gca peak = 0.28129 (95) mri peak = 0.10642 (96) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (592 voxels, overlap=1.015) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (592 voxels, peak = 95), gca=94.5 gca peak = 0.16930 (96) mri peak = 0.08844 (94) Left_Pallidum (13): linear fit = 0.98 x + 0.0 (451 voxels, overlap=1.018) Left_Pallidum (13): linear fit = 0.98 x + 0.0 (451 voxels, peak = 94), gca=93.6 gca peak = 0.24553 (55) mri peak = 0.07613 (69) Right_Hippocampus (53): linear fit = 1.25 x + 0.0 (794 voxels, overlap=0.067) Right_Hippocampus (53): linear fit = 1.25 x + 0.0 (794 voxels, peak = 68), gca=68.5 gca peak = 0.30264 (59) mri peak = 0.06843 (70) Left_Hippocampus (17): linear fit = 1.23 x + 0.0 (890 voxels, overlap=0.022) Left_Hippocampus (17): linear fit = 1.23 x + 0.0 (890 voxels, peak = 72), gca=72.3 gca peak = 0.07580 (103) mri peak = 0.07572 (103) Right_Cerebral_White_Matter (41): linear fit = 1.01 x + 0.0 (23857 voxels, overlap=0.784) Right_Cerebral_White_Matter (41): linear fit = 1.01 x + 0.0 (23857 voxels, peak = 105), gca=104.5 gca peak = 0.07714 (104) mri peak = 0.07915 (102) Left_Cerebral_White_Matter (2): linear fit = 1.01 x + 0.0 (22512 voxels, overlap=0.794) Left_Cerebral_White_Matter (2): linear fit = 1.01 x + 0.0 (22512 voxels, peak = 106), gca=105.6 gca peak = 0.09712 (58) mri peak = 0.04482 (84) Left_Cerebral_Cortex (3): linear fit = 1.40 x + 0.0 (29577 voxels, overlap=0.000) Left_Cerebral_Cortex (3): linear fit = 1.40 x + 0.0 (29577 voxels, peak = 81), gca=81.5 gca peak = 0.11620 (58) mri peak = 0.04489 (86) Right_Cerebral_Cortex (42): linear fit = 1.41 x + 0.0 (25581 voxels, overlap=0.000) Right_Cerebral_Cortex (42): linear fit = 1.41 x + 0.0 (25581 voxels, peak = 82), gca=82.1 gca peak = 0.30970 (66) mri peak = 0.09329 (84) Right_Caudate (50): linear fit = 1.26 x + 0.0 (1033 voxels, overlap=0.021) Right_Caudate (50): linear fit = 1.26 x + 0.0 (1033 voxels, peak = 83), gca=83.5 gca peak = 0.15280 (69) mri peak = 0.10157 (79) Left_Caudate (11): linear fit = 1.07 x + 0.0 (1077 voxels, overlap=0.573) Left_Caudate (11): linear fit = 1.07 x + 0.0 (1077 voxels, peak = 73), gca=73.5 gca peak = 0.13902 (56) mri peak = 0.06521 (72) Left_Cerebellum_Cortex (8): linear fit = 1.29 x + 0.0 (23373 voxels, overlap=0.001) Left_Cerebellum_Cortex (8): linear fit = 1.29 x + 0.0 (23373 voxels, peak = 73), gca=72.5 gca peak = 0.14777 (55) mri peak = 0.06419 (71) Right_Cerebellum_Cortex (47): linear fit = 1.26 x + 0.0 (23941 voxels, overlap=0.003) Right_Cerebellum_Cortex (47): linear fit = 1.26 x + 0.0 (23941 voxels, peak = 70), gca=69.6 gca peak = 0.16765 (84) mri peak = 0.10537 (88) Left_Cerebellum_White_Matter (7): linear fit = 1.04 x + 0.0 (4410 voxels, overlap=0.729) Left_Cerebellum_White_Matter (7): linear fit = 1.04 x + 0.0 (4410 voxels, peak = 88), gca=87.8 gca peak = 0.18739 (84) mri peak = 0.10168 (85) Right_Cerebellum_White_Matter (46): linear fit = 1.02 x + 0.0 (4326 voxels, overlap=0.801) Right_Cerebellum_White_Matter (46): linear fit = 1.02 x + 0.0 (4326 voxels, peak = 86), gca=86.1 gca peak = 0.29869 (57) mri peak = 0.10486 (69) Left_Amygdala (18): linear fit = 1.22 x + 0.0 (386 voxels, overlap=0.053) Left_Amygdala (18): linear fit = 1.22 x + 0.0 (386 voxels, peak = 69), gca=69.3 gca peak = 0.33601 (57) mri peak = 0.09152 (74) Right_Amygdala (54): linear fit = 1.25 x + 0.0 (446 voxels, overlap=0.053) Right_Amygdala (54): linear fit = 1.25 x + 0.0 (446 voxels, peak = 72), gca=71.5 gca peak = 0.11131 (90) mri peak = 0.08181 (84) Left_Thalamus_Proper (10): linear fit = 0.98 x + 0.0 (4018 voxels, overlap=0.912) Left_Thalamus_Proper (10): linear fit = 0.98 x + 0.0 (4018 voxels, peak = 88), gca=87.8 gca peak = 0.11793 (83) mri peak = 0.07426 (85) Right_Thalamus_Proper (49): linear fit = 1.01 x + 0.0 (3439 voxels, overlap=0.978) Right_Thalamus_Proper (49): linear fit = 1.01 x + 0.0 (3439 voxels, peak = 84), gca=84.2 gca peak = 0.08324 (81) mri peak = 0.09142 (88) Left_Putamen (12): linear fit = 1.09 x + 0.0 (1057 voxels, overlap=0.427) Left_Putamen (12): linear fit = 1.09 x + 0.0 (1057 voxels, peak = 88), gca=87.9 gca peak = 0.10360 (77) mri peak = 0.09916 (91) Right_Putamen (51): linear fit = 1.12 x + 0.0 (1188 voxels, overlap=0.238) Right_Putamen (51): linear fit = 1.12 x + 0.0 (1188 voxels, peak = 87), gca=86.6 gca peak = 0.08424 (78) mri peak = 0.10085 (82) Brain_Stem (16): linear fit = 1.05 x + 0.0 (13024 voxels, overlap=0.476) Brain_Stem (16): linear fit = 1.05 x + 0.0 (13024 voxels, peak = 82), gca=82.3 gca peak = 0.12631 (89) mri peak = 0.08511 (92) Right_VentralDC (60): linear fit = 1.04 x + 0.0 (1137 voxels, overlap=0.783) Right_VentralDC (60): linear fit = 1.04 x + 0.0 (1137 voxels, peak = 93), gca=93.0 gca peak = 0.14500 (87) mri peak = 0.08851 (92) Left_VentralDC (28): linear fit = 1.03 x + 0.0 (1263 voxels, overlap=0.878) Left_VentralDC (28): linear fit = 1.03 x + 0.0 (1263 voxels, peak = 90), gca=90.0 gca peak = 0.14975 (24) mri peak = 0.14871 (21) Third_Ventricle (14): linear fit = 0.75 x + 0.0 (443 voxels, overlap=0.254) Third_Ventricle (14): linear fit = 0.75 x + 0.0 (443 voxels, peak = 18), gca=18.1 gca peak = 0.19357 (14) mri peak = 0.12794 (17) Fourth_Ventricle (15): linear fit = 1.18 x + 0.0 (610 voxels, overlap=0.841) Fourth_Ventricle (15): linear fit = 1.18 x + 0.0 (610 voxels, peak = 17), gca=16.6 gca peak Unknown = 0.94835 ( 0) gca peak Left_Inf_Lat_Vent = 0.16825 (27) gca peak Left_Thalamus = 1.00000 (94) gca peak CSF = 0.23379 (36) gca peak Left_Accumbens_area = 0.70037 (62) gca peak Left_undetermined = 1.00000 (26) gca peak Left_vessel = 0.75997 (52) gca peak Left_choroid_plexus = 0.12089 (35) gca peak Right_Inf_Lat_Vent = 0.24655 (23) gca peak Right_Accumbens_area = 0.45042 (65) gca peak Right_vessel = 0.82168 (52) gca peak Right_choroid_plexus = 0.14516 (37) gca peak Fifth_Ventricle = 0.65475 (32) gca peak WM_hypointensities = 0.07854 (76) gca peak non_WM_hypointensities = 0.08491 (43) gca peak Optic_Chiasm = 0.71127 (75) not using caudate to estimate GM means estimating mean gm scale to be 1.29 x + 0.0 estimating mean wm scale to be 1.01 x + 0.0 estimating mean csf scale to be 1.10 x + 0.0 saving intensity scales to aseg.auto_noCCseg.label_intensities.txt renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.15136 (21) mri peak = 0.12794 (21) Left_Lateral_Ventricle (4): linear fit = 0.99 x + 0.0 (13392 voxels, overlap=0.920) Left_Lateral_Ventricle (4): linear fit = 0.99 x + 0.0 (13392 voxels, peak = 21), gca=20.7 gca peak = 0.13476 (18) mri peak = 0.13238 (21) Right_Lateral_Ventricle (43): linear fit = 0.94 x + 0.0 (13734 voxels, overlap=0.632) Right_Lateral_Ventricle (43): linear fit = 0.94 x + 0.0 (13734 voxels, peak = 17), gca=16.8 gca peak = 0.28191 (93) mri peak = 0.10642 (96) Right_Pallidum (52): linear fit = 1.01 x + 0.0 (592 voxels, overlap=1.013) Right_Pallidum (52): linear fit = 1.01 x + 0.0 (592 voxels, peak = 94), gca=94.4 gca peak = 0.20111 (94) mri peak = 0.08844 (94) Left_Pallidum (13): linear fit = 1.01 x + 0.0 (451 voxels, overlap=1.016) Left_Pallidum (13): linear fit = 1.01 x + 0.0 (451 voxels, peak = 95), gca=95.4 gca peak = 0.20226 (69) mri peak = 0.07613 (69) Right_Hippocampus (53): linear fit = 0.98 x + 0.0 (794 voxels, overlap=1.001) Right_Hippocampus (53): linear fit = 0.98 x + 0.0 (794 voxels, peak = 67), gca=67.3 gca peak = 0.28538 (69) mri peak = 0.06843 (70) Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (890 voxels, overlap=1.002) Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (890 voxels, peak = 69), gca=69.0 gca peak = 0.07771 (104) mri peak = 0.07572 (103) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (23857 voxels, overlap=0.838) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (23857 voxels, peak = 104), gca=104.0 gca peak = 0.07820 (106) mri peak = 0.07915 (102) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (22512 voxels, overlap=0.852) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (22512 voxels, peak = 105), gca=105.5 gca peak = 0.06961 (81) mri peak = 0.04482 (84) Left_Cerebral_Cortex (3): linear fit = 1.00 x + 0.0 (29577 voxels, overlap=0.944) Left_Cerebral_Cortex (3): linear fit = 1.00 x + 0.0 (29577 voxels, peak = 81), gca=81.0 gca peak = 0.08396 (82) mri peak = 0.04489 (86) Right_Cerebral_Cortex (42): linear fit = 1.00 x + 0.0 (25581 voxels, overlap=0.964) Right_Cerebral_Cortex (42): linear fit = 1.00 x + 0.0 (25581 voxels, peak = 82), gca=82.0 gca peak = 0.21382 (83) mri peak = 0.09329 (84) Right_Caudate (50): linear fit = 0.99 x + 0.0 (1033 voxels, overlap=1.001) Right_Caudate (50): linear fit = 0.99 x + 0.0 (1033 voxels, peak = 82), gca=81.8 gca peak = 0.12686 (73) mri peak = 0.10157 (79) Left_Caudate (11): linear fit = 1.01 x + 0.0 (1077 voxels, overlap=0.965) Left_Caudate (11): linear fit = 1.01 x + 0.0 (1077 voxels, peak = 74), gca=74.1 gca peak = 0.11002 (72) mri peak = 0.06521 (72) Left_Cerebellum_Cortex (8): linear fit = 1.00 x + 0.0 (23373 voxels, overlap=0.954) Left_Cerebellum_Cortex (8): linear fit = 1.00 x + 0.0 (23373 voxels, peak = 72), gca=72.0 gca peak = 0.12238 (69) mri peak = 0.06419 (71) Right_Cerebellum_Cortex (47): linear fit = 1.01 x + 0.0 (23941 voxels, overlap=0.968) Right_Cerebellum_Cortex (47): linear fit = 1.01 x + 0.0 (23941 voxels, peak = 70), gca=70.0 gca peak = 0.15145 (88) mri peak = 0.10537 (88) Left_Cerebellum_White_Matter (7): linear fit = 1.00 x + 0.0 (4410 voxels, overlap=0.922) Left_Cerebellum_White_Matter (7): linear fit = 1.00 x + 0.0 (4410 voxels, peak = 88), gca=87.6 gca peak = 0.15943 (86) mri peak = 0.10168 (85) Right_Cerebellum_White_Matter (46): linear fit = 1.00 x + 0.0 (4326 voxels, overlap=0.906) Right_Cerebellum_White_Matter (46): linear fit = 1.00 x + 0.0 (4326 voxels, peak = 86), gca=86.0 gca peak = 0.27221 (69) mri peak = 0.10486 (69) Left_Amygdala (18): linear fit = 1.00 x + 0.0 (386 voxels, overlap=0.987) Left_Amygdala (18): linear fit = 1.00 x + 0.0 (386 voxels, peak = 69), gca=69.0 gca peak = 0.29144 (71) mri peak = 0.09152 (74) Right_Amygdala (54): linear fit = 1.03 x + 0.0 (446 voxels, overlap=1.001) Right_Amygdala (54): linear fit = 1.03 x + 0.0 (446 voxels, peak = 73), gca=73.5 gca peak = 0.11235 (86) mri peak = 0.08181 (84) Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (4018 voxels, overlap=0.971) Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (4018 voxels, peak = 86), gca=85.6 gca peak = 0.11092 (82) mri peak = 0.07426 (85) Right_Thalamus_Proper (49): linear fit = 1.00 x + 0.0 (3439 voxels, overlap=0.987) Right_Thalamus_Proper (49): linear fit = 1.00 x + 0.0 (3439 voxels, peak = 82), gca=81.6 gca peak = 0.08284 (88) mri peak = 0.09142 (88) Left_Putamen (12): linear fit = 1.01 x + 0.0 (1057 voxels, overlap=0.812) Left_Putamen (12): linear fit = 1.01 x + 0.0 (1057 voxels, peak = 89), gca=89.3 gca peak = 0.08952 (88) mri peak = 0.09916 (91) Right_Putamen (51): linear fit = 1.02 x + 0.0 (1188 voxels, overlap=0.826) Right_Putamen (51): linear fit = 1.02 x + 0.0 (1188 voxels, peak = 90), gca=90.2 gca peak = 0.07729 (85) mri peak = 0.10085 (82) Brain_Stem (16): linear fit = 1.00 x + 0.0 (13024 voxels, overlap=0.678) Brain_Stem (16): linear fit = 1.00 x + 0.0 (13024 voxels, peak = 85), gca=84.6 gca peak = 0.12531 (93) mri peak = 0.08511 (92) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (1137 voxels, overlap=0.828) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (1137 voxels, peak = 93), gca=92.5 gca peak = 0.14370 (90) mri peak = 0.08851 (92) Left_VentralDC (28): linear fit = 1.00 x + 0.0 (1263 voxels, overlap=0.933) Left_VentralDC (28): linear fit = 1.00 x + 0.0 (1263 voxels, peak = 90), gca=89.6 gca peak = 0.20977 (19) mri peak = 0.14871 (21) Third_Ventricle (14): linear fit = 1.00 x + 0.0 (443 voxels, overlap=1.003) Third_Ventricle (14): linear fit = 1.00 x + 0.0 (443 voxels, peak = 19), gca=19.0 gca peak = 0.17387 (17) mri peak = 0.12794 (17) Fourth_Ventricle (15): linear fit = 0.92 x + 0.0 (610 voxels, overlap=0.774) Fourth_Ventricle (15): linear fit = 0.92 x + 0.0 (610 voxels, peak = 16), gca=15.6 gca peak Unknown = 0.94835 ( 0) gca peak Left_Inf_Lat_Vent = 0.16283 (33) gca peak Left_Thalamus = 0.36646 (104) gca peak CSF = 0.25559 (40) gca peak Left_Accumbens_area = 0.59016 (67) gca peak Left_undetermined = 1.00000 (26) gca peak Left_vessel = 0.75997 (52) gca peak Left_choroid_plexus = 0.11917 (35) gca peak Right_Inf_Lat_Vent = 0.24122 (29) gca peak Right_Accumbens_area = 0.34840 (83) gca peak Right_vessel = 0.82168 (52) gca peak Right_choroid_plexus = 0.15381 (37) gca peak Fifth_Ventricle = 0.65358 (35) gca peak WM_hypointensities = 0.07718 (78) gca peak non_WM_hypointensities = 0.09744 (44) gca peak Optic_Chiasm = 0.68927 (75) not using caudate to estimate GM means estimating mean gm scale to be 1.00 x + 0.0 estimating mean wm scale to be 1.00 x + 0.0 estimating mean csf scale to be 0.96 x + 0.0 saving intensity scales to aseg.auto_noCCseg.label_intensities.txt saving sequentially combined intensity scales to aseg.auto_noCCseg.label_intensities.txt 59756 voxels changed in iteration 0 of unlikely voxel relabeling 115 voxels changed in iteration 1 of unlikely voxel relabeling 0 voxels changed in iteration 2 of unlikely voxel relabeling 79390 gm and wm labels changed (%27 to gray, %73 to white out of all changed labels) 570 hippocampal voxels changed. 0 amygdala voxels changed. pass 1: 83729 changed. image ll: -2.157, PF=0.500 pass 2: 20190 changed. image ll: -2.155, PF=0.500 pass 3: 5709 changed. pass 4: 2100 changed. 60280 voxels changed in iteration 0 of unlikely voxel relabeling 184 voxels changed in iteration 1 of unlikely voxel relabeling 14 voxels changed in iteration 2 of unlikely voxel relabeling 0 voxels changed in iteration 3 of unlikely voxel relabeling 4917 voxels changed in iteration 0 of unlikely voxel relabeling 65 voxels changed in iteration 1 of unlikely voxel relabeling 0 voxels changed in iteration 2 of unlikely voxel relabeling 4317 voxels changed in iteration 0 of unlikely voxel relabeling 36 voxels changed in iteration 1 of unlikely voxel relabeling 1 voxels changed in iteration 2 of unlikely voxel relabeling 0 voxels changed in iteration 3 of unlikely voxel relabeling 4865 voxels changed in iteration 0 of unlikely voxel relabeling 29 voxels changed in iteration 1 of unlikely voxel relabeling 0 voxels changed in iteration 2 of unlikely voxel relabeling MRItoUCHAR: min=0, max=85 MRItoUCHAR: converting to UCHAR writing labeled volume to aseg.auto_noCCseg.mgz mri_ca_label utimesec 4418.167587 mri_ca_label stimesec 12.184806 mri_ca_label ru_maxrss 2094504 mri_ca_label ru_ixrss 0 mri_ca_label ru_idrss 0 mri_ca_label ru_isrss 0 mri_ca_label ru_minflt 10515462 mri_ca_label ru_majflt 0 mri_ca_label ru_nswap 0 mri_ca_label ru_inblock 0 mri_ca_label ru_oublock 488 mri_ca_label ru_msgsnd 0 mri_ca_label ru_msgrcv 0 mri_ca_label ru_nsignals 0 mri_ca_label ru_nvcsw 53 mri_ca_label ru_nivcsw 1957 auto-labeling took 73 minutes and 50 seconds. mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/transforms/cc_up.lta sub025 will read input aseg from aseg.auto_noCCseg.mgz writing aseg with cc labels to aseg.auto.mgz will write lta as /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/transforms/cc_up.lta reading aseg from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/aseg.auto_noCCseg.mgz reading norm from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/norm.mgz 15953 voxels in left wm, 40167 in right wm, xrange [126, 136] searching rotation angles z=[-9 5], y=[-8 6] searching scale 1 Z rot -9.4 searching scale 1 Z rot -9.2 searching scale 1 Z rot -8.9 searching scale 1 Z rot -8.7 searching scale 1 Z rot -8.4 searching scale 1 Z rot -8.2 searching scale 1 Z rot -7.9 searching scale 1 Z rot -7.7 searching scale 1 Z rot -7.4 searching scale 1 Z rot -7.2 searching scale 1 Z rot -6.9 searching scale 1 Z rot -6.7 searching scale 1 Z rot -6.4 searching scale 1 Z rot -6.2 searching scale 1 Z rot -5.9 searching scale 1 Z rot -5.7 searching scale 1 Z rot -5.4 searching scale 1 Z rot -5.2 searching scale 1 Z rot -4.9 searching scale 1 Z rot -4.7 searching scale 1 Z rot -4.4 searching scale 1 Z rot -4.2 searching scale 1 Z rot -3.9 searching scale 1 Z rot -3.7 searching scale 1 Z rot -3.4 searching scale 1 Z rot -3.2 searching scale 1 Z rot -2.9 searching scale 1 Z rot -2.7 searching scale 1 Z rot -2.4 searching scale 1 Z rot -2.2 searching scale 1 Z rot -1.9 searching scale 1 Z rot -1.7 searching scale 1 Z rot -1.4 searching scale 1 Z rot -1.2 searching scale 1 Z rot -0.9 searching scale 1 Z rot -0.7 searching scale 1 Z rot -0.4 searching scale 1 Z rot -0.2 searching scale 1 Z rot 0.1 searching scale 1 Z rot 0.3 searching scale 1 Z rot 0.6 searching scale 1 Z rot 0.8 searching scale 1 Z rot 1.1 searching scale 1 Z rot 1.3 searching scale 1 Z rot 1.6 searching scale 1 Z rot 1.8 searching scale 1 Z rot 2.1 searching scale 1 Z rot 2.3 searching scale 1 Z rot 2.6 searching scale 1 Z rot 2.8 searching scale 1 Z rot 3.1 searching scale 1 Z rot 3.3 searching scale 1 Z rot 3.6 searching scale 1 Z rot 3.8 searching scale 1 Z rot 4.1 searching scale 1 Z rot 4.3 searching scale 1 Z rot 4.6 global minimum found at slice 132.0, rotations (-0.42, -2.44) final transformation (x=132.0, yr=-0.425, zr=-2.443): 0.99906 0.04262 -0.00741 -6.49536; -0.04262 0.99909 0.00032 54.66572; 0.00741 0.00000 0.99997 26.02412; 0.00000 0.00000 0.00000 1.00000; updating x range to be [126, 131] in xformed coordinates best xformed slice 128 cc center is found at 128 79 101 eigenvectors: -0.00007 0.00448 0.99999; 0.09146 -0.99580 0.00446; 0.99581 0.09146 -0.00034; error in mid anterior detected - correcting... error in mid anterior detected - correcting... writing aseg with callosum to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/aseg.auto.mgz... corpus callosum segmentation took 0.6 minutes #-------------------------------------- #@# Merge ASeg vr mrt 22 22:28:49 CET 2019 cp aseg.auto.mgz aseg.presurf.mgz #-------------------------------------------- #@# Intensity Normalization2 vr mrt 22 22:28:49 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri mri_normalize -mprage -aseg aseg.presurf.mgz -mask brainmask.mgz norm.mgz brain.mgz assuming input volume is MGH (Van der Kouwe) MP-RAGE using segmentation for initial intensity normalization using MR volume brainmask.mgz to mask input volume... reading from norm.mgz... Reading aseg aseg.presurf.mgz normalizing image... processing with aseg removing outliers in the aseg WM... 493 control points removed Building bias image building Voronoi diagram... performing soap bubble smoothing, sigma = 0... Smoothing with sigma 8 Applying bias correction building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 90 gm peak at 62 (62), valley at 0 (-1) csf peak at 31, setting threshold to 51 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 109 gm peak at 85 (85), valley at 47 (47) csf peak at 26, setting threshold to 65 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to brain.mgz 3D bias adjustment took 3 minutes and 29 seconds. #-------------------------------------------- #@# Mask BFS vr mrt 22 22:32:21 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz threshold mask volume at 5 DoAbs = 0 Found 1639541 voxels in mask (pct= 9.77) Writing masked volume to brain.finalsurfs.mgz...done. #-------------------------------------------- #@# WM Segmentation vr mrt 22 22:32:24 CET 2019 mri_segment -mprage brain.mgz wm.seg.mgz doing initial intensity segmentation... using local statistics to label ambiguous voxels... computing class statistics for intensity windows... WM (103.0): 103.7 +- 5.3 [79.0 --> 125.0] GM (71.0) : 67.3 +- 13.7 [30.0 --> 95.0] setting bottom of white matter range to 81.0 setting top of gray matter range to 94.6 doing initial intensity segmentation... using local statistics to label ambiguous voxels... using local geometry to label remaining ambiguous voxels... reclassifying voxels using Gaussian border classifier... removing voxels with positive offset direction... smoothing T1 volume with sigma = 0.250 removing 1-dimensional structures... 8780 sparsely connected voxels removed... thickening thin strands.... 20 segments, 3227 filled 554 bright non-wm voxels segmented. 6748 diagonally connected voxels added... white matter segmentation took 1.9 minutes writing output to wm.seg.mgz... assuming input volume is MGH (Van der Kouwe) MP-RAGE mri_edit_wm_with_aseg -keep-in wm.seg.mgz brain.mgz aseg.presurf.mgz wm.asegedit.mgz preserving editing changes in input volume... auto filling took 0.56 minutes reading wm segmentation from wm.seg.mgz... 349 voxels added to wm to prevent paths from MTL structures to cortex 4974 additional wm voxels added 0 additional wm voxels added SEG EDIT: 116685 voxels turned on, 61757 voxels turned off. propagating editing to output volume from wm.seg.mgz 115,126,128 old 0 new 0 115,126,128 old 0 new 0 writing edited volume to wm.asegedit.mgz.... mri_pretess wm.asegedit.mgz wm norm.mgz wm.mgz Iteration Number : 1 pass 1 (xy+): 41 found - 41 modified | TOTAL: 41 pass 2 (xy+): 0 found - 41 modified | TOTAL: 41 pass 1 (xy-): 25 found - 25 modified | TOTAL: 66 pass 2 (xy-): 0 found - 25 modified | TOTAL: 66 pass 1 (yz+): 24 found - 24 modified | TOTAL: 90 pass 2 (yz+): 0 found - 24 modified | TOTAL: 90 pass 1 (yz-): 15 found - 15 modified | TOTAL: 105 pass 2 (yz-): 0 found - 15 modified | TOTAL: 105 pass 1 (xz+): 25 found - 25 modified | TOTAL: 130 pass 2 (xz+): 0 found - 25 modified | TOTAL: 130 pass 1 (xz-): 19 found - 19 modified | TOTAL: 149 pass 2 (xz-): 0 found - 19 modified | TOTAL: 149 Iteration Number : 1 pass 1 (+++): 50 found - 50 modified | TOTAL: 50 pass 2 (+++): 0 found - 50 modified | TOTAL: 50 pass 1 (+++): 24 found - 24 modified | TOTAL: 74 pass 2 (+++): 0 found - 24 modified | TOTAL: 74 pass 1 (+++): 26 found - 26 modified | TOTAL: 100 pass 2 (+++): 0 found - 26 modified | TOTAL: 100 pass 1 (+++): 38 found - 38 modified | TOTAL: 138 pass 2 (+++): 0 found - 38 modified | TOTAL: 138 Iteration Number : 1 pass 1 (++): 85 found - 85 modified | TOTAL: 85 pass 2 (++): 0 found - 85 modified | TOTAL: 85 pass 1 (+-): 101 found - 101 modified | TOTAL: 186 pass 2 (+-): 1 found - 102 modified | TOTAL: 187 pass 3 (+-): 0 found - 102 modified | TOTAL: 187 pass 1 (--): 91 found - 91 modified | TOTAL: 278 pass 2 (--): 1 found - 92 modified | TOTAL: 279 pass 3 (--): 0 found - 92 modified | TOTAL: 279 pass 1 (-+): 95 found - 95 modified | TOTAL: 374 pass 2 (-+): 0 found - 95 modified | TOTAL: 374 Iteration Number : 2 pass 1 (xy+): 9 found - 9 modified | TOTAL: 9 pass 2 (xy+): 0 found - 9 modified | TOTAL: 9 pass 1 (xy-): 13 found - 13 modified | TOTAL: 22 pass 2 (xy-): 0 found - 13 modified | TOTAL: 22 pass 1 (yz+): 11 found - 11 modified | TOTAL: 33 pass 2 (yz+): 0 found - 11 modified | TOTAL: 33 pass 1 (yz-): 10 found - 10 modified | TOTAL: 43 pass 2 (yz-): 0 found - 10 modified | TOTAL: 43 pass 1 (xz+): 5 found - 5 modified | TOTAL: 48 pass 2 (xz+): 0 found - 5 modified | TOTAL: 48 pass 1 (xz-): 9 found - 9 modified | TOTAL: 57 pass 2 (xz-): 0 found - 9 modified | TOTAL: 57 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 2 found - 2 modified | TOTAL: 2 pass 2 (+++): 0 found - 2 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 Iteration Number : 2 pass 1 (++): 3 found - 3 modified | TOTAL: 3 pass 2 (++): 0 found - 3 modified | TOTAL: 3 pass 1 (+-): 1 found - 1 modified | TOTAL: 4 pass 2 (+-): 0 found - 1 modified | TOTAL: 4 pass 1 (--): 5 found - 5 modified | TOTAL: 9 pass 2 (--): 0 found - 5 modified | TOTAL: 9 pass 1 (-+): 10 found - 10 modified | TOTAL: 19 pass 2 (-+): 0 found - 10 modified | TOTAL: 19 Iteration Number : 3 pass 1 (xy+): 1 found - 1 modified | TOTAL: 1 pass 2 (xy+): 0 found - 1 modified | TOTAL: 1 pass 1 (xy-): 2 found - 2 modified | TOTAL: 3 pass 2 (xy-): 0 found - 2 modified | TOTAL: 3 pass 1 (yz+): 1 found - 1 modified | TOTAL: 4 pass 2 (yz+): 0 found - 1 modified | TOTAL: 4 pass 1 (yz-): 0 found - 0 modified | TOTAL: 4 pass 1 (xz+): 1 found - 1 modified | TOTAL: 5 pass 2 (xz+): 0 found - 1 modified | TOTAL: 5 pass 1 (xz-): 0 found - 0 modified | TOTAL: 5 Iteration Number : 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (++): 1 found - 1 modified | TOTAL: 1 pass 2 (++): 0 found - 1 modified | TOTAL: 1 pass 1 (+-): 0 found - 0 modified | TOTAL: 1 pass 1 (--): 0 found - 0 modified | TOTAL: 1 pass 1 (-+): 0 found - 0 modified | TOTAL: 1 Iteration Number : 4 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 745 (out of 614652: 0.121207) binarizing input wm segmentation... Ambiguous edge configurations... mri_pretess done #-------------------------------------------- #@# Fill vr mrt 22 22:34:54 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.auto_noCCseg.mgz wm.mgz filled.mgz logging cutting plane coordinates to ../scripts/ponscc.cut.log... INFO: Using transforms/talairach.lta and its offset for Talairach volume ... using segmentation aseg.auto_noCCseg.mgz... reading input volume...done. searching for cutting planes...voxel to talairach voxel transform 1.00235 0.00018 0.00983 -8.26114; 0.00018 1.09432 0.01659 16.55058; -0.00678 -0.01798 1.00078 -10.37424; 0.00000 0.00000 0.00000 1.00000; voxel to talairach voxel transform 1.00235 0.00018 0.00983 -8.26114; 0.00018 1.09432 0.01659 16.55058; -0.00678 -0.01798 1.00078 -10.37424; 0.00000 0.00000 0.00000 1.00000; reading segmented volume aseg.auto_noCCseg.mgz... Looking for area (min, max) = (350, 1400) area[0] = 1689 (min = 350, max = 1400), aspect = 0.47 (min = 0.10, max = 0.75) need search nearby using seed (124, 113, 87), TAL = (4.0, -41.0, 15.0) talairach voxel to voxel transform 0.99759 -0.00033 -0.00979 8.14505; -0.00026 0.91356 -0.01514 -15.27919; 0.00675 0.01641 0.99888 10.14679; 0.00000 0.00000 0.00000 1.00000; segmentation indicates cc at (124, 113, 87) --> (4.0, -41.0, 15.0) done. writing output to filled.mgz... filling took 0.7 minutes talairach cc position changed to (4.00, -41.00, 15.00) Erasing brainstem...done. seed_search_size = 9, min_neighbors = 5 search rh wm seed point around talairach space:(22.00, -41.00, 15.00) SRC: (113.00, 86.61, 99.62) search lh wm seed point around talairach space (-14.00, -41.00, 15.00), SRC: (148.91, 86.60, 99.86) compute mri_fill using aseg Erasing Brain Stem and Cerebellum ... Define left and right masks using aseg: Building Voronoi diagram ... Using the Voronoi diagram to separate WM into two hemispheres ... Find the largest connected component for each hemisphere ... #-------------------------------------------- #@# Tessellate lh vr mrt 22 22:35:37 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mri_pretess ../mri/filled.mgz 255 ../mri/norm.mgz ../mri/filled-pretess255.mgz Iteration Number : 1 pass 1 (xy+): 1 found - 1 modified | TOTAL: 1 pass 2 (xy+): 0 found - 1 modified | TOTAL: 1 pass 1 (xy-): 0 found - 0 modified | TOTAL: 1 pass 1 (yz+): 2 found - 2 modified | TOTAL: 3 pass 2 (yz+): 0 found - 2 modified | TOTAL: 3 pass 1 (yz-): 0 found - 0 modified | TOTAL: 3 pass 1 (xz+): 1 found - 1 modified | TOTAL: 4 pass 2 (xz+): 0 found - 1 modified | TOTAL: 4 pass 1 (xz-): 2 found - 2 modified | TOTAL: 6 pass 2 (xz-): 0 found - 2 modified | TOTAL: 6 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 2 found - 2 modified | TOTAL: 2 pass 2 (+++): 0 found - 2 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 Iteration Number : 1 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 1 found - 1 modified | TOTAL: 1 pass 2 (+-): 0 found - 1 modified | TOTAL: 1 pass 1 (--): 0 found - 0 modified | TOTAL: 1 pass 1 (-+): 0 found - 0 modified | TOTAL: 1 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 9 (out of 294227: 0.003059) Ambiguous edge configurations... mri_pretess done mri_tessellate ../mri/filled-pretess255.mgz 255 ../surf/lh.orig.nofix $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ slice 40: 409 vertices, 466 faces slice 50: 3946 vertices, 4112 faces slice 60: 10444 vertices, 10693 faces slice 70: 18556 vertices, 18858 faces slice 80: 28459 vertices, 28799 faces slice 90: 38829 vertices, 39215 faces slice 100: 48750 vertices, 49148 faces slice 110: 58956 vertices, 59391 faces slice 120: 70509 vertices, 70997 faces slice 130: 81707 vertices, 82172 faces slice 140: 93738 vertices, 94246 faces slice 150: 103927 vertices, 104370 faces slice 160: 111735 vertices, 112164 faces slice 170: 120345 vertices, 120813 faces slice 180: 127827 vertices, 128241 faces slice 190: 134117 vertices, 134478 faces slice 200: 138862 vertices, 139210 faces slice 210: 140484 vertices, 140690 faces slice 220: 140484 vertices, 140690 faces slice 230: 140484 vertices, 140690 faces slice 240: 140484 vertices, 140690 faces slice 250: 140484 vertices, 140690 faces using the conformed surface RAS to save vertex points... writing ../surf/lh.orig.nofix using vox2ras matrix: -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; rm -f ../mri/filled-pretess255.mgz mris_extract_main_component ../surf/lh.orig.nofix ../surf/lh.orig.nofix counting number of connected components... 140484 voxel in cpt #1: X=-206 [v=140484,e=422070,f=281380] located at (-33.069950, -8.786623, 43.095222) For the whole surface: X=-206 [v=140484,e=422070,f=281380] One single component has been found nothing to do done #-------------------------------------------- #@# Tessellate rh vr mrt 22 22:35:44 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mri_pretess ../mri/filled.mgz 127 ../mri/norm.mgz ../mri/filled-pretess127.mgz Iteration Number : 1 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 1 found - 1 modified | TOTAL: 1 pass 2 (xy-): 0 found - 1 modified | TOTAL: 1 pass 1 (yz+): 3 found - 3 modified | TOTAL: 4 pass 2 (yz+): 0 found - 3 modified | TOTAL: 4 pass 1 (yz-): 2 found - 2 modified | TOTAL: 6 pass 2 (yz-): 0 found - 2 modified | TOTAL: 6 pass 1 (xz+): 1 found - 1 modified | TOTAL: 7 pass 2 (xz+): 0 found - 1 modified | TOTAL: 7 pass 1 (xz-): 1 found - 1 modified | TOTAL: 8 pass 2 (xz-): 0 found - 1 modified | TOTAL: 8 Iteration Number : 1 pass 1 (+++): 2 found - 2 modified | TOTAL: 2 pass 2 (+++): 0 found - 2 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 Iteration Number : 1 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 2 found - 2 modified | TOTAL: 2 pass 2 (+-): 0 found - 2 modified | TOTAL: 2 pass 1 (--): 0 found - 0 modified | TOTAL: 2 pass 1 (-+): 1 found - 1 modified | TOTAL: 3 pass 2 (-+): 0 found - 1 modified | TOTAL: 3 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 1 found - 1 modified | TOTAL: 1 pass 2 (yz+): 0 found - 1 modified | TOTAL: 1 pass 1 (yz-): 0 found - 0 modified | TOTAL: 1 pass 1 (xz+): 0 found - 0 modified | TOTAL: 1 pass 1 (xz-): 0 found - 0 modified | TOTAL: 1 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 14 (out of 298758: 0.004686) Ambiguous edge configurations... mri_pretess done mri_tessellate ../mri/filled-pretess127.mgz 127 ../surf/rh.orig.nofix $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ slice 40: 331 vertices, 371 faces slice 50: 3471 vertices, 3629 faces slice 60: 9552 vertices, 9804 faces slice 70: 17790 vertices, 18123 faces slice 80: 28403 vertices, 28779 faces slice 90: 39367 vertices, 39779 faces slice 100: 49981 vertices, 50346 faces slice 110: 61468 vertices, 61938 faces slice 120: 73095 vertices, 73619 faces slice 130: 84852 vertices, 85351 faces slice 140: 96430 vertices, 96953 faces slice 150: 107304 vertices, 107773 faces slice 160: 116189 vertices, 116644 faces slice 170: 124549 vertices, 125007 faces slice 180: 131843 vertices, 132276 faces slice 190: 138717 vertices, 139138 faces slice 200: 143643 vertices, 143964 faces slice 210: 144934 vertices, 145142 faces slice 220: 144934 vertices, 145142 faces slice 230: 144934 vertices, 145142 faces slice 240: 144934 vertices, 145142 faces slice 250: 144934 vertices, 145142 faces using the conformed surface RAS to save vertex points... writing ../surf/rh.orig.nofix using vox2ras matrix: -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; rm -f ../mri/filled-pretess127.mgz mris_extract_main_component ../surf/rh.orig.nofix ../surf/rh.orig.nofix counting number of connected components... 144922 voxel in cpt #1: X=-210 [v=144922,e=435396,f=290264] located at (24.256834, -8.676916, 42.772652) 12 voxel in cpt #2: X=2 [v=12,e=30,f=20] located at (-3.500000, 19.000000, 52.000000) For the whole surface: X=-208 [v=144934,e=435426,f=290284] 2 components have been found keeping component #1 with 144922 vertices done #-------------------------------------------- #@# Smooth1 lh vr mrt 22 22:35:51 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_smooth -nw -seed 1234 ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Smooth1 rh vr mrt 22 22:35:56 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation1 lh vr mrt 22 22:36:01 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix Not saving sulc Reading ../surf/lh.smoothwm.nofix avg radius = 48.3 mm, total surface area = 72626 mm^2 writing inflated surface to ../surf/lh.inflated.nofix inflation took 0.6 minutes step 000: RMS=0.167 (target=0.015) step 005: RMS=0.129 (target=0.015) step 010: RMS=0.103 (target=0.015) step 015: RMS=0.092 (target=0.015) step 020: RMS=0.083 (target=0.015) step 025: RMS=0.076 (target=0.015) step 030: RMS=0.070 (target=0.015) step 035: RMS=0.066 (target=0.015) step 040: RMS=0.063 (target=0.015) step 045: RMS=0.061 (target=0.015) step 050: RMS=0.059 (target=0.015) step 055: RMS=0.057 (target=0.015) step 060: RMS=0.057 (target=0.015) inflation complete. Not saving sulc mris_inflate utimesec 33.082358 mris_inflate stimesec 0.175007 mris_inflate ru_maxrss 185236 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 163255 mris_inflate ru_majflt 1 mris_inflate ru_nswap 0 mris_inflate ru_inblock 10504 mris_inflate ru_oublock 9896 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 61 mris_inflate ru_nivcsw 180 #-------------------------------------------- #@# Inflation1 rh vr mrt 22 22:36:34 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_inflate -no-save-sulc ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix Not saving sulc Reading ../surf/rh.smoothwm.nofix avg radius = 48.1 mm, total surface area = 74472 mm^2 writing inflated surface to ../surf/rh.inflated.nofix inflation took 0.6 minutes step 000: RMS=0.169 (target=0.015) step 005: RMS=0.131 (target=0.015) step 010: RMS=0.104 (target=0.015) step 015: RMS=0.092 (target=0.015) step 020: RMS=0.082 (target=0.015) step 025: RMS=0.075 (target=0.015) step 030: RMS=0.070 (target=0.015) step 035: RMS=0.065 (target=0.015) step 040: RMS=0.063 (target=0.015) step 045: RMS=0.061 (target=0.015) step 050: RMS=0.060 (target=0.015) step 055: RMS=0.059 (target=0.015) step 060: RMS=0.059 (target=0.015) inflation complete. Not saving sulc mris_inflate utimesec 34.074759 mris_inflate stimesec 0.187015 mris_inflate ru_maxrss 190808 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 165814 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 10208 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 82 mris_inflate ru_nivcsw 106 #-------------------------------------------- #@# QSphere lh vr mrt 22 22:37:09 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_sphere -q -seed 1234 ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix doing quick spherical unfolding. setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... vertex spacing 0.96 +- 0.58 (0.00-->5.82) (max @ vno 48460 --> 49450) face area 0.02 +- 0.03 (-0.09-->0.53) == Number of threads available to mris_sphere for OpenMP = 1 == scaling brain by 0.305... inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=176.962, avgs=0 005/300: dt: 0.9000, rms radial error=176.702, avgs=0 010/300: dt: 0.9000, rms radial error=176.143, avgs=0 015/300: dt: 0.9000, rms radial error=175.410, avgs=0 020/300: dt: 0.9000, rms radial error=174.576, avgs=0 025/300: dt: 0.9000, rms radial error=173.682, avgs=0 030/300: dt: 0.9000, rms radial error=172.756, avgs=0 035/300: dt: 0.9000, rms radial error=171.813, avgs=0 040/300: dt: 0.9000, rms radial error=170.862, avgs=0 045/300: dt: 0.9000, rms radial error=169.908, avgs=0 050/300: dt: 0.9000, rms radial error=168.956, avgs=0 055/300: dt: 0.9000, rms radial error=168.005, avgs=0 060/300: dt: 0.9000, rms radial error=167.059, avgs=0 065/300: dt: 0.9000, rms radial error=166.119, avgs=0 070/300: dt: 0.9000, rms radial error=165.185, avgs=0 075/300: dt: 0.9000, rms radial error=164.257, avgs=0 080/300: dt: 0.9000, rms radial error=163.333, avgs=0 085/300: dt: 0.9000, rms radial error=162.415, avgs=0 090/300: dt: 0.9000, rms radial error=161.501, avgs=0 095/300: dt: 0.9000, rms radial error=160.592, avgs=0 100/300: dt: 0.9000, rms radial error=159.688, avgs=0 105/300: dt: 0.9000, rms radial error=158.789, avgs=0 110/300: dt: 0.9000, rms radial error=157.896, avgs=0 115/300: dt: 0.9000, rms radial error=157.007, avgs=0 120/300: dt: 0.9000, rms radial error=156.122, avgs=0 125/300: dt: 0.9000, rms radial error=155.243, avgs=0 130/300: dt: 0.9000, rms radial error=154.368, avgs=0 135/300: dt: 0.9000, rms radial error=153.499, avgs=0 140/300: dt: 0.9000, rms radial error=152.634, avgs=0 145/300: dt: 0.9000, rms radial error=151.773, avgs=0 150/300: dt: 0.9000, rms radial error=150.918, avgs=0 155/300: dt: 0.9000, rms radial error=150.067, avgs=0 160/300: dt: 0.9000, rms radial error=149.221, avgs=0 165/300: dt: 0.9000, rms radial error=148.379, avgs=0 170/300: dt: 0.9000, rms radial error=147.542, avgs=0 175/300: dt: 0.9000, rms radial error=146.710, avgs=0 180/300: dt: 0.9000, rms radial error=145.883, avgs=0 185/300: dt: 0.9000, rms radial error=145.059, avgs=0 190/300: dt: 0.9000, rms radial error=144.241, avgs=0 195/300: dt: 0.9000, rms radial error=143.427, avgs=0 200/300: dt: 0.9000, rms radial error=142.617, avgs=0 205/300: dt: 0.9000, rms radial error=141.812, avgs=0 210/300: dt: 0.9000, rms radial error=141.012, avgs=0 215/300: dt: 0.9000, rms radial error=140.216, avgs=0 220/300: dt: 0.9000, rms radial error=139.424, avgs=0 225/300: dt: 0.9000, rms radial error=138.637, avgs=0 230/300: dt: 0.9000, rms radial error=137.854, avgs=0 235/300: dt: 0.9000, rms radial error=137.076, avgs=0 240/300: dt: 0.9000, rms radial error=136.302, avgs=0 245/300: dt: 0.9000, rms radial error=135.533, avgs=0 250/300: dt: 0.9000, rms radial error=134.768, avgs=0 255/300: dt: 0.9000, rms radial error=134.007, avgs=0 260/300: dt: 0.9000, rms radial error=133.250, avgs=0 265/300: dt: 0.9000, rms radial error=132.498, avgs=0 270/300: dt: 0.9000, rms radial error=131.749, avgs=0 275/300: dt: 0.9000, rms radial error=131.005, avgs=0 280/300: dt: 0.9000, rms radial error=130.266, avgs=0 285/300: dt: 0.9000, rms radial error=129.530, avgs=0 290/300: dt: 0.9000, rms radial error=128.799, avgs=0 295/300: dt: 0.9000, rms radial error=128.071, avgs=0 300/300: dt: 0.9000, rms radial error=127.348, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 16618.72 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00018 epoch 2 (K=40.0), pass 1, starting sse = 2859.59 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00012 epoch 3 (K=160.0), pass 1, starting sse = 341.61 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.10/12 = 0.00828 epoch 4 (K=640.0), pass 1, starting sse = 28.59 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.08/12 = 0.00673 final distance error %26.04 writing spherical brain to ../surf/lh.qsphere.nofix spherical transformation took 0.06 hours mris_sphere utimesec 203.942010 mris_sphere stimesec 0.243019 mris_sphere ru_maxrss 185760 mris_sphere ru_ixrss 0 mris_sphere ru_idrss 0 mris_sphere ru_isrss 0 mris_sphere ru_minflt 267839 mris_sphere ru_majflt 0 mris_sphere ru_nswap 0 mris_sphere ru_inblock 9896 mris_sphere ru_oublock 9896 mris_sphere ru_msgsnd 0 mris_sphere ru_msgrcv 0 mris_sphere ru_nsignals 0 mris_sphere ru_nvcsw 62 mris_sphere ru_nivcsw 248 FSRUNTIME@ mris_sphere 0.0567 hours 1 threads #-------------------------------------------- #@# QSphere rh vr mrt 22 22:40:33 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_sphere -q -seed 1234 ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix doing quick spherical unfolding. setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... vertex spacing 0.95 +- 0.57 (0.00-->6.29) (max @ vno 51700 --> 52839) face area 0.02 +- 0.03 (-0.08-->0.58) == Number of threads available to mris_sphere for OpenMP = 1 == scaling brain by 0.304... inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=176.940, avgs=0 005/300: dt: 0.9000, rms radial error=176.679, avgs=0 010/300: dt: 0.9000, rms radial error=176.121, avgs=0 015/300: dt: 0.9000, rms radial error=175.386, avgs=0 020/300: dt: 0.9000, rms radial error=174.550, avgs=0 025/300: dt: 0.9000, rms radial error=173.656, avgs=0 030/300: dt: 0.9000, rms radial error=172.730, avgs=0 035/300: dt: 0.9000, rms radial error=171.787, avgs=0 040/300: dt: 0.9000, rms radial error=170.837, avgs=0 045/300: dt: 0.9000, rms radial error=169.886, avgs=0 050/300: dt: 0.9000, rms radial error=168.935, avgs=0 055/300: dt: 0.9000, rms radial error=167.988, avgs=0 060/300: dt: 0.9000, rms radial error=167.045, avgs=0 065/300: dt: 0.9000, rms radial error=166.106, avgs=0 070/300: dt: 0.9000, rms radial error=165.173, avgs=0 075/300: dt: 0.9000, rms radial error=164.244, avgs=0 080/300: dt: 0.9000, rms radial error=163.321, avgs=0 085/300: dt: 0.9000, rms radial error=162.403, avgs=0 090/300: dt: 0.9000, rms radial error=161.490, avgs=0 095/300: dt: 0.9000, rms radial error=160.581, avgs=0 100/300: dt: 0.9000, rms radial error=159.678, avgs=0 105/300: dt: 0.9000, rms radial error=158.779, avgs=0 110/300: dt: 0.9000, rms radial error=157.886, avgs=0 115/300: dt: 0.9000, rms radial error=156.997, avgs=0 120/300: dt: 0.9000, rms radial error=156.113, avgs=0 125/300: dt: 0.9000, rms radial error=155.234, avgs=0 130/300: dt: 0.9000, rms radial error=154.360, avgs=0 135/300: dt: 0.9000, rms radial error=153.491, avgs=0 140/300: dt: 0.9000, rms radial error=152.627, avgs=0 145/300: dt: 0.9000, rms radial error=151.767, avgs=0 150/300: dt: 0.9000, rms radial error=150.912, avgs=0 155/300: dt: 0.9000, rms radial error=150.062, avgs=0 160/300: dt: 0.9000, rms radial error=149.217, avgs=0 165/300: dt: 0.9000, rms radial error=148.376, avgs=0 170/300: dt: 0.9000, rms radial error=147.540, avgs=0 175/300: dt: 0.9000, rms radial error=146.709, avgs=0 180/300: dt: 0.9000, rms radial error=145.882, avgs=0 185/300: dt: 0.9000, rms radial error=145.060, avgs=0 190/300: dt: 0.9000, rms radial error=144.242, avgs=0 195/300: dt: 0.9000, rms radial error=143.429, avgs=0 200/300: dt: 0.9000, rms radial error=142.620, avgs=0 205/300: dt: 0.9000, rms radial error=141.816, avgs=0 210/300: dt: 0.9000, rms radial error=141.016, avgs=0 215/300: dt: 0.9000, rms radial error=140.221, avgs=0 220/300: dt: 0.9000, rms radial error=139.430, avgs=0 225/300: dt: 0.9000, rms radial error=138.644, avgs=0 230/300: dt: 0.9000, rms radial error=137.862, avgs=0 235/300: dt: 0.9000, rms radial error=137.084, avgs=0 240/300: dt: 0.9000, rms radial error=136.311, avgs=0 245/300: dt: 0.9000, rms radial error=135.542, avgs=0 250/300: dt: 0.9000, rms radial error=134.777, avgs=0 255/300: dt: 0.9000, rms radial error=134.017, avgs=0 260/300: dt: 0.9000, rms radial error=133.261, avgs=0 265/300: dt: 0.9000, rms radial error=132.509, avgs=0 270/300: dt: 0.9000, rms radial error=131.761, avgs=0 275/300: dt: 0.9000, rms radial error=131.017, avgs=0 280/300: dt: 0.9000, rms radial error=130.278, avgs=0 285/300: dt: 0.9000, rms radial error=129.543, avgs=0 290/300: dt: 0.9000, rms radial error=128.812, avgs=0 295/300: dt: 0.9000, rms radial error=128.085, avgs=0 300/300: dt: 0.9000, rms radial error=127.362, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 17178.47 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00011 epoch 2 (K=40.0), pass 1, starting sse = 2968.58 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00014 epoch 3 (K=160.0), pass 1, starting sse = 348.22 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.07/11 = 0.00620 epoch 4 (K=640.0), pass 1, starting sse = 32.11 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.08/11 = 0.00732 final distance error %25.81 writing spherical brain to ../surf/rh.qsphere.nofix spherical transformation took 0.06 hours mris_sphere utimesec 205.657693 mris_sphere stimesec 0.268023 mris_sphere ru_maxrss 191296 mris_sphere ru_ixrss 0 mris_sphere ru_idrss 0 mris_sphere ru_isrss 0 mris_sphere ru_minflt 278291 mris_sphere ru_majflt 0 mris_sphere ru_nswap 0 mris_sphere ru_inblock 10208 mris_sphere ru_oublock 10208 mris_sphere ru_msgsnd 0 mris_sphere ru_msgrcv 0 mris_sphere ru_nsignals 0 mris_sphere ru_nvcsw 68 mris_sphere ru_nivcsw 248 FSRUNTIME@ mris_sphere 0.0572 hours 1 threads #-------------------------------------------- #@# Fix Topology Copy lh vr mrt 22 22:43:59 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts cp ../surf/lh.orig.nofix ../surf/lh.orig cp ../surf/lh.inflated.nofix ../surf/lh.inflated #-------------------------------------------- #@# Fix Topology Copy rh vr mrt 22 22:43:59 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts cp ../surf/rh.orig.nofix ../surf/rh.orig cp ../surf/rh.inflated.nofix ../surf/rh.inflated #@# Fix Topology lh vr mrt 22 22:43:59 CET 2019 mris_fix_topology -rusage /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/touch/rusage.mris_fix_topology.lh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 sub025 lh reading spherical homeomorphism from 'qsphere.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ before topology correction, eno=-206 (nv=140484, nf=281380, ne=422070, g=104) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 9 iterations marking ambiguous vertices... 10706 ambiguous faces found in tessellation segmenting defects... 119 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 51 into 50 -merging segment 60 into 57 -merging segment 69 into 64 -merging segment 66 into 65 115 defects to be corrected 0 vertices coincident reading input surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Computing Initial Surface Statistics -face loglikelihood: -9.1869 (-4.5934) -vertex loglikelihood: -6.2121 (-3.1060) -normal dot loglikelihood: -3.5993 (-3.5993) -quad curv loglikelihood: -6.2689 (-3.1344) Total Loglikelihood : -25.2671 CORRECTING DEFECT 0 (vertices=22, convex hull=24, v0=4124) After retessellation of defect 0 (v0=4124), euler #=-112 (133755,398247,264380) : difference with theory (-112) = 0 CORRECTING DEFECT 1 (vertices=30, convex hull=58, v0=6764) After retessellation of defect 1 (v0=6764), euler #=-111 (133774,398330,264445) : difference with theory (-111) = 0 CORRECTING DEFECT 2 (vertices=39, convex hull=56, v0=12995) After retessellation of defect 2 (v0=12995), euler #=-110 (133784,398383,264489) : difference with theory (-110) = 0 CORRECTING DEFECT 3 (vertices=30, convex hull=48, v0=18732) After retessellation of defect 3 (v0=18732), euler #=-109 (133798,398444,264537) : difference with theory (-109) = 0 CORRECTING DEFECT 4 (vertices=120, convex hull=115, v0=20240) After retessellation of defect 4 (v0=20240), euler #=-109 (133813,398544,264622) : difference with theory (-108) = 1 CORRECTING DEFECT 5 (vertices=47, convex hull=97, v0=20475) After retessellation of defect 5 (v0=20475), euler #=-108 (133838,398662,264716) : difference with theory (-107) = 1 CORRECTING DEFECT 6 (vertices=41, convex hull=56, v0=21531) After retessellation of defect 6 (v0=21531), euler #=-107 (133855,398742,264780) : difference with theory (-106) = 1 CORRECTING DEFECT 7 (vertices=65, convex hull=52, v0=22967) After retessellation of defect 7 (v0=22967), euler #=-106 (133866,398796,264824) : difference with theory (-105) = 1 CORRECTING DEFECT 8 (vertices=11, convex hull=36, v0=24554) After retessellation of defect 8 (v0=24554), euler #=-105 (133870,398818,264843) : difference with theory (-104) = 1 CORRECTING DEFECT 9 (vertices=32, convex hull=75, v0=25151) After retessellation of defect 9 (v0=25151), euler #=-104 (133881,398879,264894) : difference with theory (-103) = 1 CORRECTING DEFECT 10 (vertices=57, convex hull=63, v0=28139) After retessellation of defect 10 (v0=28139), euler #=-103 (133895,398948,264950) : difference with theory (-102) = 1 CORRECTING DEFECT 11 (vertices=108, convex hull=130, v0=28400) After retessellation of defect 11 (v0=28400), euler #=-102 (133923,399087,265062) : difference with theory (-101) = 1 CORRECTING DEFECT 12 (vertices=40, convex hull=67, v0=28673) After retessellation of defect 12 (v0=28673), euler #=-101 (133938,399158,265119) : difference with theory (-100) = 1 CORRECTING DEFECT 13 (vertices=36, convex hull=91, v0=29209) After retessellation of defect 13 (v0=29209), euler #=-100 (133952,399233,265181) : difference with theory (-99) = 1 CORRECTING DEFECT 14 (vertices=93, convex hull=75, v0=30052) After retessellation of defect 14 (v0=30052), euler #=-99 (133972,399327,265256) : difference with theory (-98) = 1 CORRECTING DEFECT 15 (vertices=20, convex hull=72, v0=31152) After retessellation of defect 15 (v0=31152), euler #=-98 (133982,399384,265304) : difference with theory (-97) = 1 CORRECTING DEFECT 16 (vertices=41, convex hull=89, v0=31340) After retessellation of defect 16 (v0=31340), euler #=-97 (133998,399471,265376) : difference with theory (-96) = 1 CORRECTING DEFECT 17 (vertices=46, convex hull=32, v0=31449) After retessellation of defect 17 (v0=31449), euler #=-96 (134001,399495,265398) : difference with theory (-95) = 1 CORRECTING DEFECT 18 (vertices=32, convex hull=82, v0=34434) After retessellation of defect 18 (v0=34434), euler #=-95 (134022,399593,265476) : difference with theory (-94) = 1 CORRECTING DEFECT 19 (vertices=23, convex hull=42, v0=35743) After retessellation of defect 19 (v0=35743), euler #=-94 (134032,399637,265511) : difference with theory (-93) = 1 CORRECTING DEFECT 20 (vertices=37, convex hull=63, v0=36348) After retessellation of defect 20 (v0=36348), euler #=-93 (134049,399714,265572) : difference with theory (-92) = 1 CORRECTING DEFECT 21 (vertices=44, convex hull=70, v0=36456) After retessellation of defect 21 (v0=36456), euler #=-92 (134058,399771,265621) : difference with theory (-91) = 1 CORRECTING DEFECT 22 (vertices=23, convex hull=59, v0=40334) After retessellation of defect 22 (v0=40334), euler #=-91 (134070,399828,265667) : difference with theory (-90) = 1 CORRECTING DEFECT 23 (vertices=176, convex hull=82, v0=40770) After retessellation of defect 23 (v0=40770), euler #=-90 (134080,399898,265728) : difference with theory (-89) = 1 CORRECTING DEFECT 24 (vertices=61, convex hull=104, v0=40796) After retessellation of defect 24 (v0=40796), euler #=-89 (134106,400026,265831) : difference with theory (-88) = 1 CORRECTING DEFECT 25 (vertices=16, convex hull=49, v0=41143) After retessellation of defect 25 (v0=41143), euler #=-88 (134113,400061,265860) : difference with theory (-87) = 1 CORRECTING DEFECT 26 (vertices=24, convex hull=56, v0=41338) After retessellation of defect 26 (v0=41338), euler #=-87 (134128,400127,265912) : difference with theory (-86) = 1 CORRECTING DEFECT 27 (vertices=53, convex hull=68, v0=42547) After retessellation of defect 27 (v0=42547), euler #=-86 (134144,400202,265972) : difference with theory (-85) = 1 CORRECTING DEFECT 28 (vertices=44, convex hull=24, v0=42634) After retessellation of defect 28 (v0=42634), euler #=-85 (134148,400218,265985) : difference with theory (-84) = 1 CORRECTING DEFECT 29 (vertices=5, convex hull=15, v0=42782) After retessellation of defect 29 (v0=42782), euler #=-84 (134149,400225,265992) : difference with theory (-83) = 1 CORRECTING DEFECT 30 (vertices=20, convex hull=32, v0=45419) After retessellation of defect 30 (v0=45419), euler #=-83 (134153,400249,266013) : difference with theory (-82) = 1 CORRECTING DEFECT 31 (vertices=30, convex hull=60, v0=45733) After retessellation of defect 31 (v0=45733), euler #=-82 (134166,400313,266065) : difference with theory (-81) = 1 CORRECTING DEFECT 32 (vertices=61, convex hull=107, v0=47701) After retessellation of defect 32 (v0=47701), euler #=-81 (134204,400476,266191) : difference with theory (-80) = 1 CORRECTING DEFECT 33 (vertices=81, convex hull=54, v0=50604) After retessellation of defect 33 (v0=50604), euler #=-80 (134227,400568,266261) : difference with theory (-79) = 1 CORRECTING DEFECT 34 (vertices=43, convex hull=29, v0=51633) After retessellation of defect 34 (v0=51633), euler #=-79 (134232,400594,266283) : difference with theory (-78) = 1 CORRECTING DEFECT 35 (vertices=5, convex hull=20, v0=55778) After retessellation of defect 35 (v0=55778), euler #=-78 (134232,400601,266291) : difference with theory (-77) = 1 CORRECTING DEFECT 36 (vertices=12, convex hull=23, v0=56574) After retessellation of defect 36 (v0=56574), euler #=-77 (134235,400616,266304) : difference with theory (-76) = 1 CORRECTING DEFECT 37 (vertices=214, convex hull=229, v0=56616) After retessellation of defect 37 (v0=56616), euler #=-77 (134355,401096,266664) : difference with theory (-75) = 2 CORRECTING DEFECT 38 (vertices=43, convex hull=57, v0=56758) After retessellation of defect 38 (v0=56758), euler #=-76 (134368,401161,266717) : difference with theory (-74) = 2 CORRECTING DEFECT 39 (vertices=111, convex hull=44, v0=56837) After retessellation of defect 39 (v0=56837), euler #=-75 (134374,401193,266744) : difference with theory (-73) = 2 CORRECTING DEFECT 40 (vertices=23, convex hull=53, v0=57310) After retessellation of defect 40 (v0=57310), euler #=-74 (134386,401247,266787) : difference with theory (-72) = 2 CORRECTING DEFECT 41 (vertices=31, convex hull=38, v0=59466) After retessellation of defect 41 (v0=59466), euler #=-73 (134393,401282,266816) : difference with theory (-71) = 2 CORRECTING DEFECT 42 (vertices=25, convex hull=20, v0=59712) After retessellation of defect 42 (v0=59712), euler #=-72 (134397,401297,266828) : difference with theory (-70) = 2 CORRECTING DEFECT 43 (vertices=87, convex hull=99, v0=64453) After retessellation of defect 43 (v0=64453), euler #=-71 (134433,401450,266946) : difference with theory (-69) = 2 CORRECTING DEFECT 44 (vertices=41, convex hull=71, v0=65184) After retessellation of defect 44 (v0=65184), euler #=-70 (134453,401539,267016) : difference with theory (-68) = 2 CORRECTING DEFECT 45 (vertices=85, convex hull=72, v0=65526) After retessellation of defect 45 (v0=65526), euler #=-69 (134487,401674,267118) : difference with theory (-67) = 2 CORRECTING DEFECT 46 (vertices=16, convex hull=19, v0=66707) After retessellation of defect 46 (v0=66707), euler #=-68 (134488,401684,267128) : difference with theory (-66) = 2 CORRECTING DEFECT 47 (vertices=55, convex hull=79, v0=68684) After retessellation of defect 47 (v0=68684), euler #=-67 (134524,401826,267235) : difference with theory (-65) = 2 CORRECTING DEFECT 48 (vertices=52, convex hull=49, v0=71404) After retessellation of defect 48 (v0=71404), euler #=-66 (134531,401866,267269) : difference with theory (-64) = 2 CORRECTING DEFECT 49 (vertices=31, convex hull=62, v0=71589) After retessellation of defect 49 (v0=71589), euler #=-65 (134540,401921,267316) : difference with theory (-63) = 2 CORRECTING DEFECT 50 (vertices=47, convex hull=96, v0=73416) After retessellation of defect 50 (v0=73416), euler #=-63 (134570,402056,267423) : difference with theory (-62) = 1 CORRECTING DEFECT 51 (vertices=22, convex hull=29, v0=74654) After retessellation of defect 51 (v0=74654), euler #=-62 (134575,402080,267443) : difference with theory (-61) = 1 CORRECTING DEFECT 52 (vertices=20, convex hull=33, v0=76097) After retessellation of defect 52 (v0=76097), euler #=-61 (134576,402093,267456) : difference with theory (-60) = 1 CORRECTING DEFECT 53 (vertices=16, convex hull=23, v0=77180) After retessellation of defect 53 (v0=77180), euler #=-60 (134578,402106,267468) : difference with theory (-59) = 1 CORRECTING DEFECT 54 (vertices=76, convex hull=98, v0=81283) After retessellation of defect 54 (v0=81283), euler #=-59 (134617,402263,267587) : difference with theory (-58) = 1 CORRECTING DEFECT 55 (vertices=38, convex hull=48, v0=82357) After retessellation of defect 55 (v0=82357), euler #=-58 (134628,402314,267628) : difference with theory (-57) = 1 CORRECTING DEFECT 56 (vertices=529, convex hull=371, v0=82555) After retessellation of defect 56 (v0=82555), euler #=-57 (134827,403116,268232) : difference with theory (-56) = 1 CORRECTING DEFECT 57 (vertices=37, convex hull=54, v0=85191) After retessellation of defect 57 (v0=85191), euler #=-56 (134841,403179,268282) : difference with theory (-55) = 1 CORRECTING DEFECT 58 (vertices=16, convex hull=21, v0=87013) After retessellation of defect 58 (v0=87013), euler #=-55 (134846,403198,268297) : difference with theory (-54) = 1 CORRECTING DEFECT 59 (vertices=20, convex hull=53, v0=89419) After retessellation of defect 59 (v0=89419), euler #=-54 (134861,403261,268346) : difference with theory (-53) = 1 CORRECTING DEFECT 60 (vertices=15, convex hull=27, v0=90923) After retessellation of defect 60 (v0=90923), euler #=-53 (134864,403277,268360) : difference with theory (-52) = 1 CORRECTING DEFECT 61 (vertices=26, convex hull=64, v0=91056) After retessellation of defect 61 (v0=91056), euler #=-52 (134878,403344,268414) : difference with theory (-51) = 1 CORRECTING DEFECT 62 (vertices=126, convex hull=126, v0=91199) After retessellation of defect 62 (v0=91199), euler #=-50 (134946,403611,268615) : difference with theory (-50) = 0 CORRECTING DEFECT 63 (vertices=143, convex hull=129, v0=91229) After retessellation of defect 63 (v0=91229), euler #=-48 (134976,403757,268733) : difference with theory (-49) = -1 CORRECTING DEFECT 64 (vertices=27, convex hull=42, v0=92363) After retessellation of defect 64 (v0=92363), euler #=-47 (134983,403799,268769) : difference with theory (-48) = -1 CORRECTING DEFECT 65 (vertices=27, convex hull=50, v0=92726) After retessellation of defect 65 (v0=92726), euler #=-46 (134992,403845,268807) : difference with theory (-47) = -1 CORRECTING DEFECT 66 (vertices=18, convex hull=44, v0=93820) After retessellation of defect 66 (v0=93820), euler #=-45 (135003,403895,268847) : difference with theory (-46) = -1 CORRECTING DEFECT 67 (vertices=8, convex hull=19, v0=94388) After retessellation of defect 67 (v0=94388), euler #=-44 (135003,403901,268854) : difference with theory (-45) = -1 CORRECTING DEFECT 68 (vertices=26, convex hull=42, v0=94738) After retessellation of defect 68 (v0=94738), euler #=-43 (135021,403970,268906) : difference with theory (-44) = -1 CORRECTING DEFECT 69 (vertices=52, convex hull=83, v0=94801) After retessellation of defect 69 (v0=94801), euler #=-42 (135053,404099,269004) : difference with theory (-43) = -1 CORRECTING DEFECT 70 (vertices=8, convex hull=14, v0=95324) After retessellation of defect 70 (v0=95324), euler #=-41 (135056,404111,269014) : difference with theory (-42) = -1 CORRECTING DEFECT 71 (vertices=86, convex hull=101, v0=95639) After retessellation of defect 71 (v0=95639), euler #=-40 (135106,404304,269158) : difference with theory (-41) = -1 CORRECTING DEFECT 72 (vertices=27, convex hull=41, v0=98608) After retessellation of defect 72 (v0=98608), euler #=-39 (135115,404344,269190) : difference with theory (-40) = -1 CORRECTING DEFECT 73 (vertices=115, convex hull=58, v0=98923) After retessellation of defect 73 (v0=98923), euler #=-38 (135121,404386,269227) : difference with theory (-39) = -1 CORRECTING DEFECT 74 (vertices=237, convex hull=97, v0=98955) After retessellation of defect 74 (v0=98955), euler #=-37 (135167,404566,269362) : difference with theory (-38) = -1 CORRECTING DEFECT 75 (vertices=28, convex hull=59, v0=101767) After retessellation of defect 75 (v0=101767), euler #=-36 (135185,404642,269421) : difference with theory (-37) = -1 CORRECTING DEFECT 76 (vertices=173, convex hull=118, v0=103013) After retessellation of defect 76 (v0=103013), euler #=-35 (135234,404842,269573) : difference with theory (-36) = -1 CORRECTING DEFECT 77 (vertices=7, convex hull=21, v0=104705) After retessellation of defect 77 (v0=104705), euler #=-34 (135235,404852,269583) : difference with theory (-35) = -1 CORRECTING DEFECT 78 (vertices=39, convex hull=64, v0=104909) After retessellation of defect 78 (v0=104909), euler #=-33 (135260,404952,269659) : difference with theory (-34) = -1 CORRECTING DEFECT 79 (vertices=12, convex hull=22, v0=105299) After retessellation of defect 79 (v0=105299), euler #=-32 (135262,404962,269668) : difference with theory (-33) = -1 CORRECTING DEFECT 80 (vertices=427, convex hull=132, v0=105348) After retessellation of defect 80 (v0=105348), euler #=-32 (135340,405268,269896) : difference with theory (-32) = 0 CORRECTING DEFECT 81 (vertices=20, convex hull=24, v0=105999) After retessellation of defect 81 (v0=105999), euler #=-31 (135346,405292,269915) : difference with theory (-31) = 0 CORRECTING DEFECT 82 (vertices=71, convex hull=97, v0=106010) After retessellation of defect 82 (v0=106010), euler #=-30 (135386,405451,270035) : difference with theory (-30) = 0 CORRECTING DEFECT 83 (vertices=17, convex hull=48, v0=108278) After retessellation of defect 83 (v0=108278), euler #=-29 (135396,405499,270074) : difference with theory (-29) = 0 CORRECTING DEFECT 84 (vertices=82, convex hull=44, v0=109103) After retessellation of defect 84 (v0=109103), euler #=-28 (135415,405574,270131) : difference with theory (-28) = 0 CORRECTING DEFECT 85 (vertices=32, convex hull=88, v0=109245) After retessellation of defect 85 (v0=109245), euler #=-27 (135432,405667,270208) : difference with theory (-27) = 0 CORRECTING DEFECT 86 (vertices=21, convex hull=49, v0=110626) After retessellation of defect 86 (v0=110626), euler #=-26 (135441,405712,270245) : difference with theory (-26) = 0 CORRECTING DEFECT 87 (vertices=15, convex hull=27, v0=112990) After retessellation of defect 87 (v0=112990), euler #=-25 (135445,405735,270265) : difference with theory (-25) = 0 CORRECTING DEFECT 88 (vertices=554, convex hull=84, v0=113042) After retessellation of defect 88 (v0=113042), euler #=-24 (135466,405835,270345) : difference with theory (-24) = 0 CORRECTING DEFECT 89 (vertices=6, convex hull=13, v0=113115) After retessellation of defect 89 (v0=113115), euler #=-23 (135467,405842,270352) : difference with theory (-23) = 0 CORRECTING DEFECT 90 (vertices=52, convex hull=44, v0=113695) After retessellation of defect 90 (v0=113695), euler #=-22 (135481,405900,270397) : difference with theory (-22) = 0 CORRECTING DEFECT 91 (vertices=31, convex hull=32, v0=117360) After retessellation of defect 91 (v0=117360), euler #=-21 (135491,405940,270428) : difference with theory (-21) = 0 CORRECTING DEFECT 92 (vertices=30, convex hull=77, v0=120579) After retessellation of defect 92 (v0=120579), euler #=-20 (135509,406025,270496) : difference with theory (-20) = 0 CORRECTING DEFECT 93 (vertices=71, convex hull=40, v0=121920) After retessellation of defect 93 (v0=121920), euler #=-19 (135520,406074,270535) : difference with theory (-19) = 0 CORRECTING DEFECT 94 (vertices=23, convex hull=57, v0=122086) After retessellation of defect 94 (v0=122086), euler #=-18 (135531,406128,270579) : difference with theory (-18) = 0 CORRECTING DEFECT 95 (vertices=44, convex hull=63, v0=122258) After retessellation of defect 95 (v0=122258), euler #=-17 (135559,406236,270660) : difference with theory (-17) = 0 CORRECTING DEFECT 96 (vertices=89, convex hull=74, v0=124989) After retessellation of defect 96 (v0=124989), euler #=-16 (135569,406311,270726) : difference with theory (-16) = 0 CORRECTING DEFECT 97 (vertices=34, convex hull=70, v0=125149) After retessellation of defect 97 (v0=125149), euler #=-15 (135581,406376,270780) : difference with theory (-15) = 0 CORRECTING DEFECT 98 (vertices=16, convex hull=33, v0=127025) After retessellation of defect 98 (v0=127025), euler #=-14 (135585,406401,270802) : difference with theory (-14) = 0 CORRECTING DEFECT 99 (vertices=20, convex hull=50, v0=127593) After retessellation of defect 99 (v0=127593), euler #=-13 (135595,406451,270843) : difference with theory (-13) = 0 CORRECTING DEFECT 100 (vertices=30, convex hull=45, v0=127728) After retessellation of defect 100 (v0=127728), euler #=-12 (135604,406494,270878) : difference with theory (-12) = 0 CORRECTING DEFECT 101 (vertices=62, convex hull=64, v0=129022) After retessellation of defect 101 (v0=129022), euler #=-11 (135616,406558,270931) : difference with theory (-11) = 0 CORRECTING DEFECT 102 (vertices=37, convex hull=35, v0=130341) After retessellation of defect 102 (v0=130341), euler #=-10 (135620,406580,270950) : difference with theory (-10) = 0 CORRECTING DEFECT 103 (vertices=53, convex hull=68, v0=130850) After retessellation of defect 103 (v0=130850), euler #=-9 (135629,406638,271000) : difference with theory (-9) = 0 CORRECTING DEFECT 104 (vertices=41, convex hull=50, v0=132549) After retessellation of defect 104 (v0=132549), euler #=-8 (135641,406691,271042) : difference with theory (-8) = 0 CORRECTING DEFECT 105 (vertices=79, convex hull=66, v0=133403) After retessellation of defect 105 (v0=133403), euler #=-7 (135652,406752,271093) : difference with theory (-7) = 0 CORRECTING DEFECT 106 (vertices=39, convex hull=80, v0=134103) After retessellation of defect 106 (v0=134103), euler #=-6 (135669,406832,271157) : difference with theory (-6) = 0 CORRECTING DEFECT 107 (vertices=50, convex hull=74, v0=136469) After retessellation of defect 107 (v0=136469), euler #=-5 (135685,406908,271218) : difference with theory (-5) = 0 CORRECTING DEFECT 108 (vertices=9, convex hull=20, v0=137391) After retessellation of defect 108 (v0=137391), euler #=-4 (135686,406917,271227) : difference with theory (-4) = 0 CORRECTING DEFECT 109 (vertices=19, convex hull=58, v0=137783) After retessellation of defect 109 (v0=137783), euler #=-3 (135697,406975,271275) : difference with theory (-3) = 0 CORRECTING DEFECT 110 (vertices=50, convex hull=65, v0=138174) After retessellation of defect 110 (v0=138174), euler #=-2 (135706,407028,271320) : difference with theory (-2) = 0 CORRECTING DEFECT 111 (vertices=24, convex hull=55, v0=139102) After retessellation of defect 111 (v0=139102), euler #=-1 (135720,407091,271370) : difference with theory (-1) = 0 CORRECTING DEFECT 112 (vertices=38, convex hull=42, v0=139561) After retessellation of defect 112 (v0=139561), euler #=0 (135731,407140,271409) : difference with theory (0) = 0 CORRECTING DEFECT 113 (vertices=21, convex hull=62, v0=140124) After retessellation of defect 113 (v0=140124), euler #=1 (135742,407197,271456) : difference with theory (1) = 0 CORRECTING DEFECT 114 (vertices=16, convex hull=57, v0=140153) After retessellation of defect 114 (v0=140153), euler #=2 (135752,407250,271500) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.88 +- 0.25 (0.02-->9.77) (max @ vno 101088 --> 106004) face area 0.00 +- 0.00 (0.00-->0.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.88 +- 0.25 (0.02-->9.77) (max @ vno 101088 --> 106004) face area 0.00 +- 0.00 (0.00-->0.00) tessellation finished, orienting corrected surface... 349 mutations (33.4%), 696 crossovers (66.6%), 382 vertices were eliminated building final representation... 4732 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=135752, nf=271500, ne=407250, g=0) writing corrected surface to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.orig... 0.000 % of the vertices (0 vertices) exhibit an orientation change topology fixing took 50.3 minutes 0 defective edges removing intersecting faces 000: 624 intersecting 001: 8 intersecting mris_fix_topology utimesec 3019.673006 mris_fix_topology stimesec 0.474032 mris_fix_topology ru_maxrss 442868 mris_fix_topology ru_ixrss 0 mris_fix_topology ru_idrss 0 mris_fix_topology ru_isrss 0 mris_fix_topology ru_minflt 450334 mris_fix_topology ru_majflt 0 mris_fix_topology ru_nswap 0 mris_fix_topology ru_inblock 21288 mris_fix_topology ru_oublock 12864 mris_fix_topology ru_msgsnd 0 mris_fix_topology ru_msgrcv 0 mris_fix_topology ru_nsignals 0 mris_fix_topology ru_nvcsw 165 mris_fix_topology ru_nivcsw 1836 FSRUNTIME@ mris_fix_topology lh 0.8389 hours 1 threads #@# Fix Topology rh vr mrt 22 23:34:19 CET 2019 mris_fix_topology -rusage /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/touch/rusage.mris_fix_topology.rh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 sub025 rh reading spherical homeomorphism from 'qsphere.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ before topology correction, eno=-210 (nv=144922, nf=290264, ne=435396, g=106) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 7 iterations marking ambiguous vertices... 14563 ambiguous faces found in tessellation segmenting defects... 107 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 4 into 3 -merging segment 21 into 20 -merging segment 29 into 28 -merging segment 32 into 31 -merging segment 56 into 52 -merging segment 87 into 85 -merging segment 106 into 104 100 defects to be corrected 0 vertices coincident reading input surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Computing Initial Surface Statistics -face loglikelihood: -9.3036 (-4.6518) -vertex loglikelihood: -6.2547 (-3.1273) -normal dot loglikelihood: -3.5869 (-3.5869) -quad curv loglikelihood: -6.4145 (-3.2072) Total Loglikelihood : -25.5597 CORRECTING DEFECT 0 (vertices=1640, convex hull=362, v0=412) L defect detected... After retessellation of defect 0 (v0=412), euler #=-98 (136381,406170,269691) : difference with theory (-97) = 1 CORRECTING DEFECT 1 (vertices=27, convex hull=19, v0=2072) After retessellation of defect 1 (v0=2072), euler #=-97 (136384,406186,269705) : difference with theory (-96) = 1 CORRECTING DEFECT 2 (vertices=25, convex hull=45, v0=8470) After retessellation of defect 2 (v0=8470), euler #=-96 (136390,406218,269732) : difference with theory (-95) = 1 CORRECTING DEFECT 3 (vertices=113, convex hull=39, v0=13151) After retessellation of defect 3 (v0=13151), euler #=-94 (136398,406260,269768) : difference with theory (-94) = 0 CORRECTING DEFECT 4 (vertices=41, convex hull=86, v0=16186) After retessellation of defect 4 (v0=16186), euler #=-93 (136421,406361,269847) : difference with theory (-93) = 0 CORRECTING DEFECT 5 (vertices=41, convex hull=61, v0=19143) After retessellation of defect 5 (v0=19143), euler #=-92 (136440,406441,269909) : difference with theory (-92) = 0 CORRECTING DEFECT 6 (vertices=26, convex hull=48, v0=19686) After retessellation of defect 6 (v0=19686), euler #=-91 (136451,406492,269950) : difference with theory (-91) = 0 CORRECTING DEFECT 7 (vertices=31, convex hull=89, v0=24670) After retessellation of defect 7 (v0=24670), euler #=-90 (136470,406584,270024) : difference with theory (-90) = 0 CORRECTING DEFECT 8 (vertices=37, convex hull=70, v0=27242) After retessellation of defect 8 (v0=27242), euler #=-89 (136488,406666,270089) : difference with theory (-89) = 0 CORRECTING DEFECT 9 (vertices=68, convex hull=43, v0=27952) After retessellation of defect 9 (v0=27952), euler #=-88 (136497,406708,270123) : difference with theory (-88) = 0 CORRECTING DEFECT 10 (vertices=26, convex hull=57, v0=28770) After retessellation of defect 10 (v0=28770), euler #=-87 (136507,406760,270166) : difference with theory (-87) = 0 CORRECTING DEFECT 11 (vertices=22, convex hull=44, v0=28869) After retessellation of defect 11 (v0=28869), euler #=-86 (136519,406812,270207) : difference with theory (-86) = 0 CORRECTING DEFECT 12 (vertices=5, convex hull=14, v0=29459) After retessellation of defect 12 (v0=29459), euler #=-85 (136519,406815,270211) : difference with theory (-85) = 0 CORRECTING DEFECT 13 (vertices=35, convex hull=66, v0=30245) After retessellation of defect 13 (v0=30245), euler #=-84 (136536,406894,270274) : difference with theory (-84) = 0 CORRECTING DEFECT 14 (vertices=90, convex hull=96, v0=30617) After retessellation of defect 14 (v0=30617), euler #=-83 (136581,407071,270407) : difference with theory (-83) = 0 CORRECTING DEFECT 15 (vertices=25, convex hull=68, v0=32436) After retessellation of defect 15 (v0=32436), euler #=-82 (136592,407130,270456) : difference with theory (-82) = 0 CORRECTING DEFECT 16 (vertices=36, convex hull=26, v0=32512) After retessellation of defect 16 (v0=32512), euler #=-81 (136596,407150,270473) : difference with theory (-81) = 0 CORRECTING DEFECT 17 (vertices=27, convex hull=50, v0=34329) After retessellation of defect 17 (v0=34329), euler #=-80 (136604,407193,270509) : difference with theory (-80) = 0 CORRECTING DEFECT 18 (vertices=55, convex hull=51, v0=34614) After retessellation of defect 18 (v0=34614), euler #=-79 (136615,407242,270548) : difference with theory (-79) = 0 CORRECTING DEFECT 19 (vertices=37, convex hull=72, v0=35012) After retessellation of defect 19 (v0=35012), euler #=-77 (136628,407310,270605) : difference with theory (-78) = -1 CORRECTING DEFECT 20 (vertices=26, convex hull=46, v0=36791) After retessellation of defect 20 (v0=36791), euler #=-76 (136641,407364,270647) : difference with theory (-77) = -1 CORRECTING DEFECT 21 (vertices=32, convex hull=64, v0=37253) After retessellation of defect 21 (v0=37253), euler #=-75 (136662,407453,270716) : difference with theory (-76) = -1 CORRECTING DEFECT 22 (vertices=28, convex hull=50, v0=37687) After retessellation of defect 22 (v0=37687), euler #=-74 (136670,407497,270753) : difference with theory (-75) = -1 CORRECTING DEFECT 23 (vertices=6, convex hull=28, v0=38189) After retessellation of defect 23 (v0=38189), euler #=-73 (136672,407511,270766) : difference with theory (-74) = -1 CORRECTING DEFECT 24 (vertices=49, convex hull=79, v0=38747) After retessellation of defect 24 (v0=38747), euler #=-72 (136688,407594,270834) : difference with theory (-73) = -1 CORRECTING DEFECT 25 (vertices=36, convex hull=68, v0=39052) After retessellation of defect 25 (v0=39052), euler #=-71 (136707,407681,270903) : difference with theory (-72) = -1 CORRECTING DEFECT 26 (vertices=69, convex hull=105, v0=39542) After retessellation of defect 26 (v0=39542), euler #=-69 (136740,407828,271019) : difference with theory (-71) = -2 CORRECTING DEFECT 27 (vertices=28, convex hull=60, v0=43358) After retessellation of defect 27 (v0=43358), euler #=-68 (136756,407899,271075) : difference with theory (-70) = -2 CORRECTING DEFECT 28 (vertices=184, convex hull=182, v0=43619) After retessellation of defect 28 (v0=43619), euler #=-66 (136810,408143,271267) : difference with theory (-69) = -3 CORRECTING DEFECT 29 (vertices=39, convex hull=87, v0=51252) After retessellation of defect 29 (v0=51252), euler #=-65 (136818,408205,271322) : difference with theory (-68) = -3 CORRECTING DEFECT 30 (vertices=51, convex hull=87, v0=53427) After retessellation of defect 30 (v0=53427), euler #=-64 (136832,408284,271388) : difference with theory (-67) = -3 CORRECTING DEFECT 31 (vertices=23, convex hull=63, v0=55104) After retessellation of defect 31 (v0=55104), euler #=-63 (136841,408335,271431) : difference with theory (-66) = -3 CORRECTING DEFECT 32 (vertices=118, convex hull=63, v0=58007) After retessellation of defect 32 (v0=58007), euler #=-62 (136882,408487,271543) : difference with theory (-65) = -3 CORRECTING DEFECT 33 (vertices=59, convex hull=120, v0=59172) After retessellation of defect 33 (v0=59172), euler #=-61 (136919,408649,271669) : difference with theory (-64) = -3 CORRECTING DEFECT 34 (vertices=71, convex hull=72, v0=60161) After retessellation of defect 34 (v0=60161), euler #=-60 (136942,408748,271746) : difference with theory (-63) = -3 CORRECTING DEFECT 35 (vertices=7, convex hull=12, v0=61158) After retessellation of defect 35 (v0=61158), euler #=-59 (136942,408751,271750) : difference with theory (-62) = -3 CORRECTING DEFECT 36 (vertices=40, convex hull=83, v0=62081) After retessellation of defect 36 (v0=62081), euler #=-58 (136964,408853,271831) : difference with theory (-61) = -3 CORRECTING DEFECT 37 (vertices=46, convex hull=89, v0=66724) After retessellation of defect 37 (v0=66724), euler #=-57 (136987,408956,271912) : difference with theory (-60) = -3 CORRECTING DEFECT 38 (vertices=66, convex hull=47, v0=67225) After retessellation of defect 38 (v0=67225), euler #=-56 (137000,409013,271957) : difference with theory (-59) = -3 CORRECTING DEFECT 39 (vertices=29, convex hull=31, v0=69200) After retessellation of defect 39 (v0=69200), euler #=-55 (137005,409039,271979) : difference with theory (-58) = -3 CORRECTING DEFECT 40 (vertices=62, convex hull=115, v0=72291) After retessellation of defect 40 (v0=72291), euler #=-54 (137029,409161,272078) : difference with theory (-57) = -3 CORRECTING DEFECT 41 (vertices=6, convex hull=33, v0=72496) After retessellation of defect 41 (v0=72496), euler #=-53 (137031,409177,272093) : difference with theory (-56) = -3 CORRECTING DEFECT 42 (vertices=52, convex hull=50, v0=75446) After retessellation of defect 42 (v0=75446), euler #=-52 (137045,409238,272141) : difference with theory (-55) = -3 CORRECTING DEFECT 43 (vertices=30, convex hull=51, v0=78812) After retessellation of defect 43 (v0=78812), euler #=-51 (137062,409309,272196) : difference with theory (-54) = -3 CORRECTING DEFECT 44 (vertices=75, convex hull=47, v0=81219) After retessellation of defect 44 (v0=81219), euler #=-50 (137075,409365,272240) : difference with theory (-53) = -3 CORRECTING DEFECT 45 (vertices=61, convex hull=67, v0=83471) After retessellation of defect 45 (v0=83471), euler #=-49 (137105,409483,272329) : difference with theory (-52) = -3 CORRECTING DEFECT 46 (vertices=91, convex hull=40, v0=83598) After retessellation of defect 46 (v0=83598), euler #=-48 (137115,409525,272362) : difference with theory (-51) = -3 CORRECTING DEFECT 47 (vertices=76, convex hull=40, v0=84359) After retessellation of defect 47 (v0=84359), euler #=-47 (137126,409572,272399) : difference with theory (-50) = -3 CORRECTING DEFECT 48 (vertices=1544, convex hull=553, v0=85841) L defect detected... After retessellation of defect 48 (v0=85841), euler #=-50 (137273,410324,273001) : difference with theory (-49) = 1 CORRECTING DEFECT 49 (vertices=175, convex hull=150, v0=87127) After retessellation of defect 49 (v0=87127), euler #=-49 (137306,410494,273139) : difference with theory (-48) = 1 CORRECTING DEFECT 50 (vertices=38, convex hull=47, v0=89898) After retessellation of defect 50 (v0=89898), euler #=-48 (137318,410548,273182) : difference with theory (-47) = 1 CORRECTING DEFECT 51 (vertices=7, convex hull=23, v0=91993) After retessellation of defect 51 (v0=91993), euler #=-47 (137318,410555,273190) : difference with theory (-46) = 1 CORRECTING DEFECT 52 (vertices=30, convex hull=51, v0=94818) After retessellation of defect 52 (v0=94818), euler #=-46 (137332,410621,273243) : difference with theory (-45) = 1 CORRECTING DEFECT 53 (vertices=53, convex hull=82, v0=95224) After retessellation of defect 53 (v0=95224), euler #=-45 (137344,410698,273309) : difference with theory (-44) = 1 CORRECTING DEFECT 54 (vertices=379, convex hull=169, v0=96253) After retessellation of defect 54 (v0=96253), euler #=-44 (137409,410974,273521) : difference with theory (-43) = 1 CORRECTING DEFECT 55 (vertices=16, convex hull=46, v0=96450) After retessellation of defect 55 (v0=96450), euler #=-43 (137418,411015,273554) : difference with theory (-42) = 1 CORRECTING DEFECT 56 (vertices=30, convex hull=76, v0=97456) After retessellation of defect 56 (v0=97456), euler #=-42 (137432,411084,273610) : difference with theory (-41) = 1 CORRECTING DEFECT 57 (vertices=31, convex hull=24, v0=99948) After retessellation of defect 57 (v0=99948), euler #=-41 (137433,411094,273620) : difference with theory (-40) = 1 CORRECTING DEFECT 58 (vertices=603, convex hull=325, v0=100773) After retessellation of defect 58 (v0=100773), euler #=-40 (137473,411393,273880) : difference with theory (-39) = 1 CORRECTING DEFECT 59 (vertices=174, convex hull=100, v0=103202) After retessellation of defect 59 (v0=103202), euler #=-39 (137490,411497,273968) : difference with theory (-38) = 1 CORRECTING DEFECT 60 (vertices=21, convex hull=38, v0=103506) After retessellation of defect 60 (v0=103506), euler #=-38 (137502,411545,274005) : difference with theory (-37) = 1 CORRECTING DEFECT 61 (vertices=9, convex hull=18, v0=105129) After retessellation of defect 61 (v0=105129), euler #=-37 (137505,411558,274016) : difference with theory (-36) = 1 CORRECTING DEFECT 62 (vertices=23, convex hull=43, v0=107470) After retessellation of defect 62 (v0=107470), euler #=-36 (137515,411603,274052) : difference with theory (-35) = 1 CORRECTING DEFECT 63 (vertices=21, convex hull=20, v0=107961) After retessellation of defect 63 (v0=107961), euler #=-35 (137519,411620,274066) : difference with theory (-34) = 1 CORRECTING DEFECT 64 (vertices=72, convex hull=83, v0=108188) After retessellation of defect 64 (v0=108188), euler #=-34 (137553,411761,274174) : difference with theory (-33) = 1 CORRECTING DEFECT 65 (vertices=63, convex hull=89, v0=108705) After retessellation of defect 65 (v0=108705), euler #=-33 (137598,411931,274300) : difference with theory (-32) = 1 CORRECTING DEFECT 66 (vertices=28, convex hull=68, v0=109979) After retessellation of defect 66 (v0=109979), euler #=-32 (137615,412005,274358) : difference with theory (-31) = 1 CORRECTING DEFECT 67 (vertices=74, convex hull=74, v0=110044) After retessellation of defect 67 (v0=110044), euler #=-31 (137629,412082,274422) : difference with theory (-30) = 1 CORRECTING DEFECT 68 (vertices=50, convex hull=45, v0=110804) After retessellation of defect 68 (v0=110804), euler #=-30 (137640,412132,274462) : difference with theory (-29) = 1 CORRECTING DEFECT 69 (vertices=6, convex hull=13, v0=111084) After retessellation of defect 69 (v0=111084), euler #=-29 (137641,412140,274470) : difference with theory (-28) = 1 CORRECTING DEFECT 70 (vertices=14, convex hull=24, v0=111691) After retessellation of defect 70 (v0=111691), euler #=-28 (137644,412152,274480) : difference with theory (-27) = 1 CORRECTING DEFECT 71 (vertices=23, convex hull=57, v0=112278) After retessellation of defect 71 (v0=112278), euler #=-27 (137653,412201,274521) : difference with theory (-26) = 1 CORRECTING DEFECT 72 (vertices=23, convex hull=28, v0=113763) After retessellation of defect 72 (v0=113763), euler #=-26 (137657,412221,274538) : difference with theory (-25) = 1 CORRECTING DEFECT 73 (vertices=43, convex hull=77, v0=114516) After retessellation of defect 73 (v0=114516), euler #=-25 (137683,412335,274627) : difference with theory (-24) = 1 CORRECTING DEFECT 74 (vertices=43, convex hull=45, v0=116908) After retessellation of defect 74 (v0=116908), euler #=-24 (137696,412394,274674) : difference with theory (-23) = 1 CORRECTING DEFECT 75 (vertices=28, convex hull=22, v0=117457) After retessellation of defect 75 (v0=117457), euler #=-23 (137699,412409,274687) : difference with theory (-22) = 1 CORRECTING DEFECT 76 (vertices=27, convex hull=27, v0=117692) After retessellation of defect 76 (v0=117692), euler #=-22 (137704,412430,274704) : difference with theory (-21) = 1 CORRECTING DEFECT 77 (vertices=60, convex hull=87, v0=118700) After retessellation of defect 77 (v0=118700), euler #=-21 (137734,412557,274802) : difference with theory (-20) = 1 CORRECTING DEFECT 78 (vertices=78, convex hull=36, v0=119378) After retessellation of defect 78 (v0=119378), euler #=-20 (137743,412603,274840) : difference with theory (-19) = 1 CORRECTING DEFECT 79 (vertices=7, convex hull=14, v0=119556) After retessellation of defect 79 (v0=119556), euler #=-19 (137743,412606,274844) : difference with theory (-18) = 1 CORRECTING DEFECT 80 (vertices=120, convex hull=152, v0=120357) After retessellation of defect 80 (v0=120357), euler #=-17 (137801,412857,275039) : difference with theory (-17) = 0 CORRECTING DEFECT 81 (vertices=24, convex hull=26, v0=121803) After retessellation of defect 81 (v0=121803), euler #=-16 (137806,412880,275058) : difference with theory (-16) = 0 CORRECTING DEFECT 82 (vertices=86, convex hull=62, v0=124352) After retessellation of defect 82 (v0=124352), euler #=-16 (137823,412957,275118) : difference with theory (-15) = 1 CORRECTING DEFECT 83 (vertices=20, convex hull=25, v0=125112) After retessellation of defect 83 (v0=125112), euler #=-15 (137829,412982,275138) : difference with theory (-14) = 1 CORRECTING DEFECT 84 (vertices=27, convex hull=32, v0=125319) After retessellation of defect 84 (v0=125319), euler #=-14 (137836,413013,275163) : difference with theory (-13) = 1 CORRECTING DEFECT 85 (vertices=7, convex hull=12, v0=125906) After retessellation of defect 85 (v0=125906), euler #=-13 (137836,413015,275166) : difference with theory (-12) = 1 CORRECTING DEFECT 86 (vertices=72, convex hull=90, v0=126047) After retessellation of defect 86 (v0=126047), euler #=-12 (137853,413107,275242) : difference with theory (-11) = 1 CORRECTING DEFECT 87 (vertices=38, convex hull=74, v0=127074) After retessellation of defect 87 (v0=127074), euler #=-11 (137862,413162,275289) : difference with theory (-10) = 1 CORRECTING DEFECT 88 (vertices=18, convex hull=50, v0=128782) After retessellation of defect 88 (v0=128782), euler #=-10 (137871,413208,275327) : difference with theory (-9) = 1 CORRECTING DEFECT 89 (vertices=20, convex hull=68, v0=129031) After retessellation of defect 89 (v0=129031), euler #=-9 (137880,413256,275367) : difference with theory (-8) = 1 CORRECTING DEFECT 90 (vertices=36, convex hull=64, v0=130310) After retessellation of defect 90 (v0=130310), euler #=-8 (137898,413340,275434) : difference with theory (-7) = 1 CORRECTING DEFECT 91 (vertices=27, convex hull=54, v0=130502) After retessellation of defect 91 (v0=130502), euler #=-7 (137907,413390,275476) : difference with theory (-6) = 1 CORRECTING DEFECT 92 (vertices=117, convex hull=152, v0=133921) After retessellation of defect 92 (v0=133921), euler #=-6 (137952,413603,275645) : difference with theory (-5) = 1 CORRECTING DEFECT 93 (vertices=25, convex hull=63, v0=133993) After retessellation of defect 93 (v0=133993), euler #=-5 (137961,413656,275690) : difference with theory (-4) = 1 CORRECTING DEFECT 94 (vertices=83, convex hull=92, v0=134394) After retessellation of defect 94 (v0=134394), euler #=-4 (137994,413795,275797) : difference with theory (-3) = 1 CORRECTING DEFECT 95 (vertices=39, convex hull=78, v0=138609) After retessellation of defect 95 (v0=138609), euler #=-3 (138020,413905,275882) : difference with theory (-2) = 1 CORRECTING DEFECT 96 (vertices=30, convex hull=46, v0=138639) After retessellation of defect 96 (v0=138639), euler #=-2 (138031,413952,275919) : difference with theory (-1) = 1 CORRECTING DEFECT 97 (vertices=42, convex hull=93, v0=139577) After retessellation of defect 97 (v0=139577), euler #=-1 (138050,414045,275994) : difference with theory (0) = 1 CORRECTING DEFECT 98 (vertices=155, convex hull=101, v0=140605) After retessellation of defect 98 (v0=140605), euler #=1 (138084,414188,276105) : difference with theory (1) = 0 CORRECTING DEFECT 99 (vertices=78, convex hull=110, v0=141189) After retessellation of defect 99 (v0=141189), euler #=2 (138125,414369,276246) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.88 +- 0.26 (0.03-->12.75) (max @ vno 88364 --> 88388) face area 0.00 +- 0.00 (0.00-->0.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.88 +- 0.26 (0.03-->12.75) (max @ vno 88364 --> 88388) face area 0.00 +- 0.00 (0.00-->0.00) tessellation finished, orienting corrected surface... 310 mutations (32.9%), 631 crossovers (67.1%), 808 vertices were eliminated building final representation... 6797 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=138125, nf=276246, ne=414369, g=0) writing corrected surface to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.orig... 0.000 % of the vertices (0 vertices) exhibit an orientation change topology fixing took 60.8 minutes 0 defective edges removing intersecting faces 000: 700 intersecting 001: 21 intersecting mris_fix_topology utimesec 3643.938560 mris_fix_topology stimesec 1.172075 mris_fix_topology ru_maxrss 470360 mris_fix_topology ru_ixrss 0 mris_fix_topology ru_idrss 0 mris_fix_topology ru_isrss 0 mris_fix_topology ru_minflt 1485268 mris_fix_topology ru_majflt 0 mris_fix_topology ru_nswap 0 mris_fix_topology ru_inblock 15904 mris_fix_topology ru_oublock 13128 mris_fix_topology ru_msgsnd 0 mris_fix_topology ru_msgrcv 0 mris_fix_topology ru_nsignals 0 mris_fix_topology ru_nvcsw 148 mris_fix_topology ru_nivcsw 2071 FSRUNTIME@ mris_fix_topology rh 1.0126 hours 1 threads mris_euler_number ../surf/lh.orig euler # = v-e+f = 2g-2: 135752 - 407250 + 271500 = 2 --> 0 holes F =2V-4: 271500 = 271504-4 (0) 2E=3F: 814500 = 814500 (0) total defect index = 0 mris_euler_number ../surf/rh.orig euler # = v-e+f = 2g-2: 138125 - 414369 + 276246 = 2 --> 0 holes F =2V-4: 276246 = 276250-4 (0) 2E=3F: 828738 = 828738 (0) total defect index = 0 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_remove_intersection ../surf/lh.orig ../surf/lh.orig intersection removal took 0.00 hours removing intersecting faces 000: 73 intersecting 001: 4 intersecting writing corrected surface to ../surf/lh.orig rm ../surf/lh.inflated /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_remove_intersection ../surf/rh.orig ../surf/rh.orig intersection removal took 0.00 hours removing intersecting faces 000: 109 intersecting 001: 2 intersecting writing corrected surface to ../surf/rh.orig rm ../surf/rh.inflated #-------------------------------------------- #@# Make White Surf lh za mrt 23 00:35:15 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -whiteonly -mgz -T1 brain.finalsurfs sub025 lh using white.preaparc as white matter name... only generating white matter surface using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline not using aparc to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/filled.mgz... reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/brain.finalsurfs.mgz... reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/../mri/aseg.presurf.mgz... reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/wm.mgz... 22994 bright wm thresholded. 657 bright non-wm voxels segmented. reading original surface position from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.orig... computing class statistics... border white: 279893 voxels (1.67%) border gray 299781 voxels (1.79%) WM (95.0): 96.0 +- 7.3 [70.0 --> 110.0] GM (76.0) : 72.3 +- 14.2 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 63.8 (was 70) setting MAX_BORDER_WHITE to 105.3 (was 105) setting MIN_BORDER_WHITE to 78.0 (was 85) setting MAX_CSF to 49.6 (was 40) setting MAX_GRAY to 90.7 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 63.8 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 35.4 (was 40) repositioning cortical surface to gray/white boundary smoothing T1 volume with sigma = 2.000 vertex spacing 0.81 +- 0.23 (0.02-->3.73) (max @ vno 98008 --> 102470) face area 0.28 +- 0.13 (0.00-->2.51) mean absolute distance = 0.87 +- 1.19 5369 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=98+-7.0, GM=78+-12.2 mean inside = 91.5, mean outside = 77.7 smoothing surface for 5 iterations... inhibiting deformation at non-cortical midline structures... mean border=85.4, 201 (201) missing vertices, mean dist 0.0 [1.1 (%39.8)->0.7 (%60.2))] %22 local maxima, %73 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=dccn-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.87 +- 0.26 (0.06-->3.81) (max @ vno 103186 --> 103873) face area 0.28 +- 0.14 (0.00-->2.23) mean absolute distance = 0.62 +- 0.95 6234 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=1976686.2, rms=7.347 001: dt: 0.5000, sse=1112124.8, rms=4.734 (35.564%) 002: dt: 0.5000, sse=790756.9, rms=3.188 (32.662%) 003: dt: 0.5000, sse=690310.1, rms=2.494 (21.757%) 004: dt: 0.5000, sse=663802.6, rms=2.255 (9.598%) 005: dt: 0.5000, sse=653276.8, rms=2.179 (3.369%) rms = 2.15, time step reduction 1 of 3 to 0.250... 006: dt: 0.5000, sse=648005.2, rms=2.154 (1.143%) 007: dt: 0.2500, sse=597833.6, rms=1.514 (29.693%) 008: dt: 0.2500, sse=589350.9, rms=1.401 (7.486%) rms = 1.38, time step reduction 2 of 3 to 0.125... 009: dt: 0.2500, sse=587135.9, rms=1.382 (1.326%) rms = 1.36, time step reduction 3 of 3 to 0.062... 010: dt: 0.1250, sse=584629.4, rms=1.363 (1.378%) positioning took 0.9 minutes inhibiting deformation at non-cortical midline structures... removing 1 vertex label from ripped group removing 2 vertex label from ripped group removing 2 vertex label from ripped group mean border=87.7, 235 (120) missing vertices, mean dist -0.4 [0.9 (%61.5)->0.2 (%38.5))] %42 local maxima, %52 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=dccn-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.86 +- 0.26 (0.02-->3.84) (max @ vno 85266 --> 86441) face area 0.32 +- 0.16 (0.00-->2.98) mean absolute distance = 0.48 +- 0.58 3987 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=964557.8, rms=3.652 011: dt: 0.5000, sse=799507.1, rms=2.529 (30.764%) 012: dt: 0.5000, sse=742664.6, rms=2.101 (16.913%) 013: dt: 0.5000, sse=734999.7, rms=1.988 (5.390%) rms = 1.95, time step reduction 1 of 3 to 0.250... 014: dt: 0.5000, sse=720054.2, rms=1.946 (2.079%) 015: dt: 0.2500, sse=687413.6, rms=1.481 (23.891%) 016: dt: 0.2500, sse=679277.9, rms=1.361 (8.153%) 017: dt: 0.2500, sse=674862.6, rms=1.309 (3.778%) rms = 1.28, time step reduction 2 of 3 to 0.125... 018: dt: 0.2500, sse=679551.1, rms=1.279 (2.303%) rms = 1.26, time step reduction 3 of 3 to 0.062... 019: dt: 0.1250, sse=667920.4, rms=1.258 (1.620%) positioning took 0.8 minutes inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group removing 2 vertex label from ripped group mean border=90.2, 268 (107) missing vertices, mean dist -0.3 [0.6 (%67.6)->0.3 (%32.4))] %64 local maxima, %30 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=dccn-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.86 +- 0.26 (0.04-->4.18) (max @ vno 85266 --> 86441) face area 0.31 +- 0.16 (0.00-->3.17) mean absolute distance = 0.36 +- 0.43 3955 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=919861.6, rms=3.495 020: dt: 0.5000, sse=747370.8, rms=2.008 (42.557%) 021: dt: 0.5000, sse=694685.3, rms=1.660 (17.303%) rms = 1.68, time step reduction 1 of 3 to 0.250... 022: dt: 0.2500, sse=665439.2, rms=1.389 (16.315%) 023: dt: 0.2500, sse=657484.1, rms=1.241 (10.699%) rms = 1.21, time step reduction 2 of 3 to 0.125... 024: dt: 0.2500, sse=664205.6, rms=1.209 (2.546%) rms = 1.19, time step reduction 3 of 3 to 0.062... 025: dt: 0.1250, sse=648165.7, rms=1.190 (1.547%) positioning took 0.6 minutes inhibiting deformation at non-cortical midline structures... removing 1 vertex label from ripped group removing 2 vertex label from ripped group mean border=91.3, 345 (98) missing vertices, mean dist -0.1 [0.4 (%60.1)->0.3 (%39.9))] %76 local maxima, %19 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=dccn-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white.preaparc... writing smoothed curvature to lh.curv 000: dt: 0.0000, sse=701008.6, rms=1.949 026: dt: 0.5000, sse=667896.6, rms=1.214 (37.676%) rms = 1.45, time step reduction 1 of 3 to 0.250... 027: dt: 0.2500, sse=634960.4, rms=1.011 (16.727%) rms = 0.98, time step reduction 2 of 3 to 0.125... 028: dt: 0.2500, sse=647035.7, rms=0.982 (2.871%) rms = 0.96, time step reduction 3 of 3 to 0.062... 029: dt: 0.1250, sse=637010.9, rms=0.960 (2.247%) positioning took 0.4 minutes generating cortex label... 20 non-cortical segments detected only using segment with 8573 vertices erasing segment 1 (vno[0] = 65711) erasing segment 2 (vno[0] = 66911) erasing segment 3 (vno[0] = 68094) erasing segment 4 (vno[0] = 68571) erasing segment 5 (vno[0] = 69201) erasing segment 6 (vno[0] = 72561) erasing segment 7 (vno[0] = 75285) erasing segment 8 (vno[0] = 76938) erasing segment 9 (vno[0] = 77960) erasing segment 10 (vno[0] = 87957) erasing segment 11 (vno[0] = 90020) erasing segment 12 (vno[0] = 91612) erasing segment 13 (vno[0] = 91954) erasing segment 14 (vno[0] = 94628) erasing segment 15 (vno[0] = 96983) erasing segment 16 (vno[0] = 96987) erasing segment 17 (vno[0] = 97960) erasing segment 18 (vno[0] = 101691) erasing segment 19 (vno[0] = 102398) writing cortex label to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/lh.cortex.label... writing curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.curv writing smoothed area to lh.area writing curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.area vertex spacing 0.86 +- 0.27 (0.03-->4.17) (max @ vno 85266 --> 86441) face area 0.31 +- 0.16 (0.00-->3.13) refinement took 4.0 minutes #-------------------------------------------- #@# Make White Surf rh za mrt 23 00:39:15 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -whiteonly -mgz -T1 brain.finalsurfs sub025 rh using white.preaparc as white matter name... only generating white matter surface using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline not using aparc to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/filled.mgz... reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/brain.finalsurfs.mgz... reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/../mri/aseg.presurf.mgz... reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/wm.mgz... 22994 bright wm thresholded. 657 bright non-wm voxels segmented. reading original surface position from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.orig... computing class statistics... border white: 279893 voxels (1.67%) border gray 299781 voxels (1.79%) WM (95.0): 96.0 +- 7.3 [70.0 --> 110.0] GM (76.0) : 72.3 +- 14.2 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 62.8 (was 70) setting MAX_BORDER_WHITE to 105.3 (was 105) setting MIN_BORDER_WHITE to 77.0 (was 85) setting MAX_CSF to 48.6 (was 40) setting MAX_GRAY to 90.7 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 62.8 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 34.4 (was 40) repositioning cortical surface to gray/white boundary smoothing T1 volume with sigma = 2.000 vertex spacing 0.81 +- 0.23 (0.01-->4.28) (max @ vno 88374 --> 88388) face area 0.27 +- 0.13 (0.00-->3.13) mean absolute distance = 0.86 +- 1.19 5632 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=98+-7.8, GM=77+-13.0 mean inside = 91.3, mean outside = 77.0 smoothing surface for 5 iterations... inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group mean border=85.4, 184 (184) missing vertices, mean dist -0.0 [1.0 (%41.4)->0.7 (%58.6))] %23 local maxima, %72 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=dccn-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.87 +- 0.26 (0.04-->4.83) (max @ vno 88374 --> 88388) face area 0.27 +- 0.14 (0.00-->3.50) mean absolute distance = 0.63 +- 0.96 5826 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=2210480.2, rms=7.781 001: dt: 0.5000, sse=1204588.5, rms=5.019 (35.501%) 002: dt: 0.5000, sse=839769.6, rms=3.379 (32.666%) 003: dt: 0.5000, sse=721918.1, rms=2.632 (22.118%) 004: dt: 0.5000, sse=685830.8, rms=2.366 (10.085%) 005: dt: 0.5000, sse=676296.4, rms=2.270 (4.077%) rms = 2.23, time step reduction 1 of 3 to 0.250... 006: dt: 0.5000, sse=671313.1, rms=2.235 (1.559%) 007: dt: 0.2500, sse=615427.8, rms=1.571 (29.710%) 008: dt: 0.2500, sse=603170.5, rms=1.443 (8.154%) rms = 1.41, time step reduction 2 of 3 to 0.125... 009: dt: 0.2500, sse=602927.6, rms=1.414 (1.989%) rms = 1.39, time step reduction 3 of 3 to 0.062... 010: dt: 0.1250, sse=599819.8, rms=1.390 (1.681%) positioning took 0.9 minutes inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group mean border=87.7, 163 (41) missing vertices, mean dist -0.4 [0.9 (%60.9)->0.3 (%39.1))] %42 local maxima, %53 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=dccn-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.86 +- 0.26 (0.02-->4.83) (max @ vno 88374 --> 88388) face area 0.32 +- 0.16 (0.00-->4.40) mean absolute distance = 0.51 +- 0.60 4694 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=1008357.1, rms=3.774 011: dt: 0.5000, sse=822614.2, rms=2.653 (29.701%) 012: dt: 0.5000, sse=761554.5, rms=2.214 (16.579%) 013: dt: 0.5000, sse=755996.2, rms=2.081 (6.007%) 014: dt: 0.5000, sse=747279.4, rms=2.030 (2.452%) rms = 2.04, time step reduction 1 of 3 to 0.250... 015: dt: 0.2500, sse=705731.7, rms=1.657 (18.348%) 016: dt: 0.2500, sse=696158.4, rms=1.444 (12.835%) 017: dt: 0.2500, sse=694882.3, rms=1.377 (4.646%) rms = 1.33, time step reduction 2 of 3 to 0.125... 018: dt: 0.2500, sse=683740.5, rms=1.330 (3.410%) rms = 1.31, time step reduction 3 of 3 to 0.062... 019: dt: 0.1250, sse=694952.2, rms=1.306 (1.867%) positioning took 0.8 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group removing 4 vertex label from ripped group removing 3 vertex label from ripped group mean border=90.2, 187 (23) missing vertices, mean dist -0.3 [0.6 (%67.2)->0.3 (%32.8))] %64 local maxima, %31 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=dccn-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.86 +- 0.27 (0.06-->4.78) (max @ vno 88374 --> 88388) face area 0.31 +- 0.16 (0.00-->3.88) mean absolute distance = 0.37 +- 0.44 3550 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=976364.1, rms=3.613 020: dt: 0.5000, sse=762720.9, rms=2.122 (41.274%) 021: dt: 0.5000, sse=721404.0, rms=1.715 (19.185%) rms = 1.74, time step reduction 1 of 3 to 0.250... 022: dt: 0.2500, sse=683821.7, rms=1.434 (16.354%) 023: dt: 0.2500, sse=685847.3, rms=1.276 (11.066%) rms = 1.24, time step reduction 2 of 3 to 0.125... 024: dt: 0.2500, sse=670031.9, rms=1.237 (3.050%) rms = 1.21, time step reduction 3 of 3 to 0.062... 025: dt: 0.1250, sse=665865.6, rms=1.213 (1.880%) positioning took 0.6 minutes inhibiting deformation at non-cortical midline structures... removing 4 vertex label from ripped group removing 4 vertex label from ripped group removing 1 vertex label from ripped group mean border=91.3, 252 (14) missing vertices, mean dist -0.1 [0.4 (%60.1)->0.3 (%39.9))] %75 local maxima, %20 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=dccn-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white.preaparc... writing smoothed curvature to rh.curv 000: dt: 0.0000, sse=721788.5, rms=1.971 026: dt: 0.5000, sse=680389.7, rms=1.230 (37.614%) rms = 1.48, time step reduction 1 of 3 to 0.250... 027: dt: 0.2500, sse=652246.9, rms=1.031 (16.148%) rms = 1.00, time step reduction 2 of 3 to 0.125... 028: dt: 0.2500, sse=654754.4, rms=1.004 (2.590%) rms = 0.98, time step reduction 3 of 3 to 0.062... 029: dt: 0.1250, sse=644738.4, rms=0.979 (2.569%) positioning took 0.4 minutes generating cortex label... 7 non-cortical segments detected only using segment with 8154 vertices erasing segment 1 (vno[0] = 91173) erasing segment 2 (vno[0] = 94325) erasing segment 3 (vno[0] = 99538) erasing segment 4 (vno[0] = 104613) erasing segment 5 (vno[0] = 107429) erasing segment 6 (vno[0] = 137331) writing cortex label to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/rh.cortex.label... writing curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.curv writing smoothed area to rh.area writing curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.area vertex spacing 0.86 +- 0.27 (0.04-->4.86) (max @ vno 88374 --> 88388) face area 0.31 +- 0.16 (0.00-->3.86) refinement took 4.1 minutes #-------------------------------------------- #@# Smooth2 lh za mrt 23 00:43:22 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_smooth -n 3 -nw -seed 1234 ../surf/lh.white.preaparc ../surf/lh.smoothwm smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Smooth2 rh za mrt 23 00:43:26 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_smooth -n 3 -nw -seed 1234 ../surf/rh.white.preaparc ../surf/rh.smoothwm smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation2 lh za mrt 23 00:43:31 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_inflate -rusage /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/touch/rusage.mris_inflate.lh.dat ../surf/lh.smoothwm ../surf/lh.inflated Reading ../surf/lh.smoothwm avg radius = 48.1 mm, total surface area = 75067 mm^2 writing inflated surface to ../surf/lh.inflated writing sulcal depths to ../surf/lh.sulc step 000: RMS=0.173 (target=0.015) step 005: RMS=0.124 (target=0.015) step 010: RMS=0.097 (target=0.015) step 015: RMS=0.081 (target=0.015) step 020: RMS=0.069 (target=0.015) step 025: RMS=0.058 (target=0.015) step 030: RMS=0.049 (target=0.015) step 035: RMS=0.044 (target=0.015) step 040: RMS=0.039 (target=0.015) step 045: RMS=0.035 (target=0.015) step 050: RMS=0.032 (target=0.015) step 055: RMS=0.029 (target=0.015) step 060: RMS=0.027 (target=0.015) inflation complete. inflation took 0.5 minutes mris_inflate utimesec 32.055683 mris_inflate stimesec 0.167013 mris_inflate ru_maxrss 179252 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 156536 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 9552 mris_inflate ru_oublock 10616 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 79 mris_inflate ru_nivcsw 178 #-------------------------------------------- #@# Inflation2 rh za mrt 23 00:44:03 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_inflate -rusage /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/touch/rusage.mris_inflate.rh.dat ../surf/rh.smoothwm ../surf/rh.inflated Reading ../surf/rh.smoothwm avg radius = 47.8 mm, total surface area = 76472 mm^2 writing inflated surface to ../surf/rh.inflated writing sulcal depths to ../surf/rh.sulc step 000: RMS=0.175 (target=0.015) step 005: RMS=0.126 (target=0.015) step 010: RMS=0.098 (target=0.015) step 015: RMS=0.082 (target=0.015) step 020: RMS=0.069 (target=0.015) step 025: RMS=0.058 (target=0.015) step 030: RMS=0.048 (target=0.015) step 035: RMS=0.041 (target=0.015) step 040: RMS=0.036 (target=0.015) step 045: RMS=0.032 (target=0.015) step 050: RMS=0.029 (target=0.015) step 055: RMS=0.027 (target=0.015) step 060: RMS=0.026 (target=0.015) inflation complete. inflation took 0.6 minutes mris_inflate utimesec 32.752162 mris_inflate stimesec 0.177990 mris_inflate ru_maxrss 182224 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 161365 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 9720 mris_inflate ru_oublock 10800 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 84 mris_inflate ru_nivcsw 177 #-------------------------------------------- #@# Curv .H and .K lh za mrt 23 00:44:36 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_curvature -w lh.white.preaparc total integrated curvature = 15.274*4pi (191.941) --> -14 handles ICI = 245.4, FI = 2024.5, variation=33766.443 writing Gaussian curvature to ./lh.white.preaparc.K...done. writing mean curvature to ./lh.white.preaparc.H...done. rm -f lh.white.H ln -s lh.white.preaparc.H lh.white.H rm -f lh.white.K ln -s lh.white.preaparc.K lh.white.K mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 lh.inflated normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 158 vertices thresholded to be in k1 ~ [-1.28 0.39], k2 ~ [-0.13 0.10] total integrated curvature = 0.474*4pi (5.953) --> 1 handles ICI = 1.4, FI = 9.8, variation=163.770 121 vertices thresholded to be in [-0.05 0.02] writing Gaussian curvature to ./lh.inflated.K...thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.002 114 vertices thresholded to be in [-0.42 0.16] done. writing mean curvature to ./lh.inflated.H...curvature mean = -0.019, std = 0.025 done. #-------------------------------------------- #@# Curv .H and .K rh za mrt 23 00:45:47 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_curvature -w rh.white.preaparc total integrated curvature = 27.635*4pi (347.274) --> -27 handles ICI = 256.2, FI = 1864.6, variation=31917.560 writing Gaussian curvature to ./rh.white.preaparc.K...done. writing mean curvature to ./rh.white.preaparc.H...done. rm -f rh.white.H ln -s rh.white.preaparc.H rh.white.H rm -f rh.white.K ln -s rh.white.preaparc.K rh.white.K mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 rh.inflated normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 177 vertices thresholded to be in k1 ~ [-0.49 0.80], k2 ~ [-0.12 0.14] total integrated curvature = 0.376*4pi (4.726) --> 1 handles ICI = 1.3, FI = 10.2, variation=167.777 130 vertices thresholded to be in [-0.04 0.02] writing Gaussian curvature to ./rh.inflated.K...thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.001 123 vertices thresholded to be in [-0.19 0.29] done. writing mean curvature to ./rh.inflated.H...curvature mean = -0.018, std = 0.024 done. #----------------------------------------- #@# Curvature Stats lh za mrt 23 00:46:58 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm sub025 lh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/lh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ sub025/lh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vertex faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 275 ] Gb_filter = 0 WARN: S lookup min: -1.216549 WARN: S explicit min: 0.000000 vertex = 676 WARN: C lookup max: 166.531067 WARN: C explicit max: 129.847305 vertex = 75018 #----------------------------------------- #@# Curvature Stats rh za mrt 23 00:47:01 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm sub025 rh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/rh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ sub025/rh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vertex faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 310 ] Gb_filter = 0 WARN: S lookup min: -0.090772 WARN: S explicit min: 0.000000 vertex = 83 #-------------------------------------------- #@# Sphere lh za mrt 23 00:47:05 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_sphere -rusage /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/touch/rusage.mris_sphere.lh.dat -seed 1234 ../surf/lh.inflated ../surf/lh.sphere setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... == Number of threads available to mris_sphere for OpenMP = 1 == scaling brain by 0.295... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=dccn-, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 1234 -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %20.35 pass 1: epoch 2 of 3 starting distance error %20.31 unfolding complete - removing small folds... starting distance error %20.21 removing remaining folds... final distance error %20.23 MRISunfold() return, current seed 1234 -01: dt=0.0000, 597 negative triangles 149: dt=0.9900, 597 negative triangles 150: dt=0.9900, 336 negative triangles 151: dt=0.9900, 294 negative triangles 152: dt=0.9900, 274 negative triangles 153: dt=0.9900, 229 negative triangles 154: dt=0.9900, 196 negative triangles 155: dt=0.9900, 174 negative triangles 156: dt=0.9900, 173 negative triangles 157: dt=0.9900, 174 negative triangles 158: dt=0.9900, 161 negative triangles 159: dt=0.9900, 166 negative triangles 160: dt=0.9900, 164 negative triangles 161: dt=0.9900, 150 negative triangles 162: dt=0.9900, 155 negative triangles 163: dt=0.9900, 157 negative triangles 164: dt=0.9900, 152 negative triangles 165: dt=0.9900, 151 negative triangles 166: dt=0.9900, 151 negative triangles 167: dt=0.9900, 143 negative triangles 168: dt=0.9900, 152 negative triangles 169: dt=0.9900, 146 negative triangles 170: dt=0.9900, 142 negative triangles 171: dt=0.9900, 143 negative triangles 172: dt=0.9900, 145 negative triangles 173: dt=0.9900, 149 negative triangles 174: dt=0.9900, 138 negative triangles 175: dt=0.9900, 135 negative triangles 176: dt=0.9900, 127 negative triangles 177: dt=0.9900, 123 negative triangles 178: dt=0.9900, 119 negative triangles 179: dt=0.9900, 116 negative triangles 180: dt=0.9900, 123 negative triangles 181: dt=0.9900, 123 negative triangles 182: dt=0.9900, 119 negative triangles 183: dt=0.9900, 119 negative triangles 184: dt=0.9900, 116 negative triangles 185: dt=0.9900, 110 negative triangles 186: dt=0.9900, 103 negative triangles 187: dt=0.9900, 104 negative triangles 188: dt=0.9900, 106 negative triangles 189: dt=0.9900, 105 negative triangles 190: dt=0.9900, 105 negative triangles 191: dt=0.9900, 105 negative triangles 192: dt=0.9900, 100 negative triangles 193: dt=0.9900, 103 negative triangles 194: dt=0.9900, 102 negative triangles 195: dt=0.9900, 108 negative triangles 196: dt=0.9900, 102 negative triangles 197: dt=0.9900, 99 negative triangles 198: dt=0.9900, 105 negative triangles 199: dt=0.9900, 102 negative triangles 200: dt=0.9900, 92 negative triangles 201: dt=0.9900, 92 negative triangles 202: dt=0.9900, 91 negative triangles 203: dt=0.9900, 91 negative triangles 204: dt=0.9900, 96 negative triangles 205: dt=0.9900, 78 negative triangles 206: dt=0.9900, 93 negative triangles 207: dt=0.9900, 82 negative triangles 208: dt=0.9900, 79 negative triangles 209: dt=0.9900, 73 negative triangles 210: dt=0.9900, 73 negative triangles 211: dt=0.9900, 72 negative triangles 212: dt=0.9900, 80 negative triangles 213: dt=0.9900, 70 negative triangles 214: dt=0.9900, 74 negative triangles 215: dt=0.9900, 69 negative triangles 216: dt=0.9900, 72 negative triangles 217: dt=0.9900, 70 negative triangles 218: dt=0.9900, 81 negative triangles 219: dt=0.9900, 73 negative triangles 220: dt=0.9900, 77 negative triangles 221: dt=0.9900, 73 negative triangles 222: dt=0.9900, 79 negative triangles 223: dt=0.9900, 67 negative triangles 224: dt=0.9900, 70 negative triangles 225: dt=0.9900, 59 negative triangles 226: dt=0.9900, 57 negative triangles 227: dt=0.9900, 65 negative triangles 228: dt=0.9900, 60 negative triangles 229: dt=0.9900, 53 negative triangles 230: dt=0.9900, 63 negative triangles 231: dt=0.9900, 59 negative triangles 232: dt=0.9900, 61 negative triangles 233: dt=0.9900, 58 negative triangles 234: dt=0.9900, 55 negative triangles 235: dt=0.9900, 57 negative triangles 236: dt=0.9900, 53 negative triangles 237: dt=0.9900, 54 negative triangles 238: dt=0.9900, 49 negative triangles 239: dt=0.9900, 46 negative triangles 240: dt=0.9900, 41 negative triangles 241: dt=0.9900, 48 negative triangles 242: dt=0.9900, 39 negative triangles 243: dt=0.9900, 47 negative triangles 244: dt=0.9900, 44 negative triangles 245: dt=0.9900, 44 negative triangles 246: dt=0.9900, 46 negative triangles 247: dt=0.9900, 35 negative triangles 248: dt=0.9900, 39 negative triangles 249: dt=0.9900, 41 negative triangles 250: dt=0.9900, 33 negative triangles 251: dt=0.9900, 32 negative triangles 252: dt=0.9900, 39 negative triangles 253: dt=0.9900, 37 negative triangles 254: dt=0.9900, 29 negative triangles 255: dt=0.9900, 35 negative triangles 256: dt=0.9900, 25 negative triangles 257: dt=0.9900, 28 negative triangles 258: dt=0.9900, 32 negative triangles 259: dt=0.9900, 28 negative triangles 260: dt=0.9900, 21 negative triangles 261: dt=0.9900, 30 negative triangles 262: dt=0.9900, 23 negative triangles 263: dt=0.9900, 16 negative triangles 264: dt=0.9900, 22 negative triangles 265: dt=0.9900, 24 negative triangles 266: dt=0.9900, 19 negative triangles 267: dt=0.9900, 18 negative triangles 268: dt=0.9900, 22 negative triangles 269: dt=0.9900, 19 negative triangles 270: dt=0.9900, 19 negative triangles 271: dt=0.9900, 22 negative triangles 272: dt=0.9900, 15 negative triangles 273: dt=0.9900, 18 negative triangles 274: dt=0.9900, 22 negative triangles 275: dt=0.9900, 20 negative triangles 276: dt=0.9900, 15 negative triangles 277: dt=0.9900, 18 negative triangles 278: dt=0.9900, 15 negative triangles 279: dt=0.9900, 15 negative triangles 280: dt=0.9900, 17 negative triangles 281: dt=0.9900, 18 negative triangles 282: dt=0.9900, 10 negative triangles 283: dt=0.9900, 18 negative triangles 284: dt=0.9900, 15 negative triangles 285: dt=0.9900, 13 negative triangles 286: dt=0.9900, 12 negative triangles 287: dt=0.9900, 14 negative triangles 288: dt=0.9900, 13 negative triangles 289: dt=0.9900, 12 negative triangles 290: dt=0.9900, 7 negative triangles 291: dt=0.9900, 8 negative triangles 292: dt=0.9900, 11 negative triangles 293: dt=0.9900, 10 negative triangles 294: dt=0.9900, 7 negative triangles 295: dt=0.9900, 7 negative triangles 296: dt=0.9900, 6 negative triangles 297: dt=0.9900, 7 negative triangles 298: dt=0.9900, 2 negative triangles 299: dt=0.9900, 5 negative triangles 300: dt=0.9900, 2 negative triangles 301: dt=0.9900, 3 negative triangles 302: dt=0.9900, 2 negative triangles writing spherical brain to ../surf/lh.sphere spherical transformation took 0.67 hours mris_sphere utimesec 2410.009459 mris_sphere stimesec 0.971062 mris_sphere ru_maxrss 245168 mris_sphere ru_ixrss 0 mris_sphere ru_idrss 0 mris_sphere ru_isrss 0 mris_sphere ru_minflt 897535 mris_sphere ru_majflt 0 mris_sphere ru_nswap 0 mris_sphere ru_inblock 0 mris_sphere ru_oublock 9552 mris_sphere ru_msgsnd 0 mris_sphere ru_msgrcv 0 mris_sphere ru_nsignals 0 mris_sphere ru_nvcsw 61 mris_sphere ru_nivcsw 1252 FSRUNTIME@ mris_sphere 0.6697 hours 1 threads #-------------------------------------------- #@# Sphere rh za mrt 23 01:27:16 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_sphere -rusage /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/touch/rusage.mris_sphere.rh.dat -seed 1234 ../surf/rh.inflated ../surf/rh.sphere setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... == Number of threads available to mris_sphere for OpenMP = 1 == scaling brain by 0.294... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=dccn-, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 1234 -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %20.01 pass 1: epoch 2 of 3 starting distance error %19.96 unfolding complete - removing small folds... starting distance error %19.88 removing remaining folds... final distance error %19.90 MRISunfold() return, current seed 1234 -01: dt=0.0000, 500 negative triangles 184: dt=0.9900, 500 negative triangles 185: dt=0.9900, 233 negative triangles 186: dt=0.9900, 191 negative triangles 187: dt=0.9900, 159 negative triangles 188: dt=0.9900, 142 negative triangles 189: dt=0.9900, 120 negative triangles 190: dt=0.9900, 118 negative triangles 191: dt=0.9900, 103 negative triangles 192: dt=0.9900, 93 negative triangles 193: dt=0.9900, 88 negative triangles 194: dt=0.9900, 80 negative triangles 195: dt=0.9900, 75 negative triangles 196: dt=0.9900, 72 negative triangles 197: dt=0.9900, 70 negative triangles 198: dt=0.9900, 61 negative triangles 199: dt=0.9900, 59 negative triangles 200: dt=0.9900, 57 negative triangles 201: dt=0.9900, 44 negative triangles 202: dt=0.9900, 44 negative triangles 203: dt=0.9900, 43 negative triangles 204: dt=0.9900, 37 negative triangles 205: dt=0.9900, 41 negative triangles 206: dt=0.9900, 46 negative triangles 207: dt=0.9900, 37 negative triangles 208: dt=0.9900, 35 negative triangles 209: dt=0.9900, 29 negative triangles 210: dt=0.9900, 26 negative triangles 211: dt=0.9900, 26 negative triangles 212: dt=0.9900, 25 negative triangles 213: dt=0.9900, 26 negative triangles 214: dt=0.9900, 26 negative triangles 215: dt=0.9900, 23 negative triangles 216: dt=0.9900, 20 negative triangles 217: dt=0.9900, 25 negative triangles 218: dt=0.9900, 20 negative triangles 219: dt=0.9900, 20 negative triangles 220: dt=0.9900, 17 negative triangles 221: dt=0.9900, 20 negative triangles 222: dt=0.9900, 20 negative triangles 223: dt=0.9900, 16 negative triangles 224: dt=0.9900, 15 negative triangles 225: dt=0.9900, 14 negative triangles 226: dt=0.9900, 17 negative triangles 227: dt=0.9900, 15 negative triangles 228: dt=0.9900, 14 negative triangles 229: dt=0.9900, 16 negative triangles 230: dt=0.9900, 16 negative triangles 231: dt=0.9900, 17 negative triangles 232: dt=0.9900, 16 negative triangles 233: dt=0.9900, 18 negative triangles 234: dt=0.9900, 15 negative triangles 235: dt=0.9405, 15 negative triangles 236: dt=0.9405, 17 negative triangles 237: dt=0.9405, 17 negative triangles 238: dt=0.9405, 15 negative triangles 239: dt=0.9405, 15 negative triangles 240: dt=0.9405, 18 negative triangles 241: dt=0.9405, 15 negative triangles 242: dt=0.9405, 14 negative triangles 243: dt=0.9405, 17 negative triangles 244: dt=0.9405, 15 negative triangles 245: dt=0.8935, 15 negative triangles 246: dt=0.8935, 11 negative triangles 247: dt=0.8935, 12 negative triangles 248: dt=0.8935, 9 negative triangles 249: dt=0.8935, 7 negative triangles 250: dt=0.8935, 8 negative triangles 251: dt=0.8935, 7 negative triangles 252: dt=0.8935, 7 negative triangles 253: dt=0.8935, 7 negative triangles 254: dt=0.8935, 7 negative triangles 255: dt=0.8935, 5 negative triangles 256: dt=0.8935, 5 negative triangles 257: dt=0.8935, 4 negative triangles 258: dt=0.8935, 3 negative triangles 259: dt=0.8935, 1 negative triangles 260: dt=0.8935, 1 negative triangles 261: dt=0.8935, 1 negative triangles writing spherical brain to ../surf/rh.sphere spherical transformation took 0.74 hours mris_sphere utimesec 2649.731872 mris_sphere stimesec 0.959062 mris_sphere ru_maxrss 249308 mris_sphere ru_ixrss 0 mris_sphere ru_idrss 0 mris_sphere ru_isrss 0 mris_sphere ru_minflt 908723 mris_sphere ru_majflt 0 mris_sphere ru_nswap 0 mris_sphere ru_inblock 0 mris_sphere ru_oublock 9720 mris_sphere ru_msgsnd 0 mris_sphere ru_msgrcv 0 mris_sphere ru_nsignals 0 mris_sphere ru_nvcsw 83 mris_sphere ru_nivcsw 1140 FSRUNTIME@ mris_sphere 0.7363 hours 1 threads #-------------------------------------------- #@# Surf Reg lh za mrt 23 02:11:26 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_register -curv -rusage /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/touch/rusage.mris_register.lh.dat ../surf/lh.sphere /opt/freesurfer/6.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg using smoothwm curvature for final alignment cwd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts cmdline mris_register -curv -rusage /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/touch/rusage.mris_register.lh.dat ../surf/lh.sphere /opt/freesurfer/6.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg 0 inflated.H 1 sulc 2 smoothwm (computed) $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading surface from ../surf/lh.sphere... reading template parameterization from /opt/freesurfer/6.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=dccn-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 0 randomSeed 0 tol=5.0e-01, sigma=0.0, host=dccn-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading lh.sulc curvature mean = -0.000, std = 5.254 curvature mean = 0.019, std = 0.817 curvature mean = 0.035, std = 0.868 Starting MRISrigidBodyAlignGlobal() d=64.00 min @ (0.00, -16.00, 16.00) sse = 323695.0, tmin=0.8142 d=32.00 min @ (0.00, 8.00, 0.00) sse = 233228.6, tmin=1.6394 d=16.00 min @ (4.00, 0.00, 0.00) sse = 221091.8, tmin=2.4663 d=8.00 min @ (0.00, 2.00, -2.00) sse = 215280.8, tmin=3.2943 d=4.00 min @ (0.00, -1.00, 1.00) sse = 213426.3, tmin=4.1276 d=2.00 min @ (0.00, 0.50, 0.00) sse = 212950.0, tmin=4.9634 d=1.00 min @ (0.00, 0.00, -0.25) sse = 212882.8, tmin=5.7972 d=0.50 min @ (0.12, 0.00, 0.00) sse = 212870.4, tmin=6.6403 tol=1.0e+00, sigma=0.5, host=dccn-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization MRISrigidBodyAlignGlobal() done 6.64 min curvature mean = -0.018, std = 0.838 curvature mean = 0.010, std = 0.951 curvature mean = -0.022, std = 0.849 curvature mean = 0.003, std = 0.980 curvature mean = -0.022, std = 0.851 curvature mean = 0.000, std = 0.992 2 Reading smoothwm curvature mean = -0.049, std = 0.378 curvature mean = 0.031, std = 0.248 curvature mean = 0.083, std = 0.265 curvature mean = 0.026, std = 0.305 curvature mean = 0.046, std = 0.408 curvature mean = 0.024, std = 0.332 curvature mean = 0.028, std = 0.525 curvature mean = 0.024, std = 0.343 curvature mean = 0.013, std = 0.627 MRISregister() return, current seed 0 -01: dt=0.0000, 117 negative triangles 109: dt=0.9900, 117 negative triangles 110: dt=0.9405, 141 negative triangles expanding nbhd size to 1 111: dt=0.9900, 131 negative triangles 112: dt=0.9900, 120 negative triangles 113: dt=0.9900, 105 negative triangles 114: dt=0.9900, 103 negative triangles 115: dt=0.9900, 92 negative triangles 116: dt=0.9900, 88 negative triangles 117: dt=0.9900, 89 negative triangles 118: dt=0.9900, 94 negative triangles 119: dt=0.9900, 85 negative triangles 120: dt=0.9900, 79 negative triangles 121: dt=0.9900, 68 negative triangles 122: dt=0.9900, 65 negative triangles 123: dt=0.9900, 61 negative triangles 124: dt=0.9900, 63 negative triangles 125: dt=0.9900, 67 negative triangles 126: dt=0.9900, 66 negative triangles 127: dt=0.9900, 54 negative triangles 128: dt=0.9900, 48 negative triangles 129: dt=0.9900, 50 negative triangles 130: dt=0.9900, 48 negative triangles 131: dt=0.9900, 50 negative triangles 132: dt=0.9900, 48 negative triangles 133: dt=0.9900, 43 negative triangles 134: dt=0.9900, 38 negative triangles 135: dt=0.9900, 43 negative triangles 136: dt=0.9900, 41 negative triangles 137: dt=0.9900, 38 negative triangles 138: dt=0.9900, 37 negative triangles 139: dt=0.9900, 39 negative triangles 140: dt=0.9900, 37 negative triangles 141: dt=0.9900, 35 negative triangles 142: dt=0.9900, 34 negative triangles 143: dt=0.9900, 36 negative triangles 144: dt=0.9900, 31 negative triangles 145: dt=0.9900, 29 negative triangles 146: dt=0.9900, 28 negative triangles 147: dt=0.9900, 27 negative triangles 148: dt=0.9900, 28 negative triangles 149: dt=0.9900, 29 negative triangles 150: dt=0.9900, 28 negative triangles 151: dt=0.9900, 26 negative triangles 152: dt=0.9900, 23 negative triangles 153: dt=0.9900, 23 negative triangles 154: dt=0.9900, 21 negative triangles 155: dt=0.9900, 21 negative triangles 156: dt=0.9900, 22 negative triangles 157: dt=0.9900, 22 negative triangles 158: dt=0.9900, 24 negative triangles 159: dt=0.9900, 20 negative triangles 160: dt=0.9900, 19 negative triangles 161: dt=0.9900, 17 negative triangles 162: dt=0.9900, 15 negative triangles 163: dt=0.9900, 14 negative triangles 164: dt=0.9900, 13 negative triangles 165: dt=0.9900, 14 negative triangles 166: dt=0.9900, 14 negative triangles 167: dt=0.9900, 13 negative triangles 168: dt=0.9900, 11 negative triangles 169: dt=0.9900, 12 negative triangles 170: dt=0.9900, 9 negative triangles 171: dt=0.9900, 9 negative triangles 172: dt=0.9900, 9 negative triangles 173: dt=0.9900, 7 negative triangles 174: dt=0.9900, 6 negative triangles 175: dt=0.9900, 5 negative triangles 176: dt=0.9900, 5 negative triangles 177: dt=0.9900, 5 negative triangles 178: dt=0.9900, 5 negative triangles 179: dt=0.9900, 5 negative triangles 180: dt=0.9900, 5 negative triangles 181: dt=0.9900, 6 negative triangles 182: dt=0.9900, 5 negative triangles 183: dt=0.9900, 5 negative triangles 184: dt=0.9900, 5 negative triangles 185: dt=0.9405, 5 negative triangles 186: dt=0.9405, 6 negative triangles 187: dt=0.9405, 2 negative triangles 188: dt=0.9405, 2 negative triangles 189: dt=0.9405, 2 negative triangles 190: dt=0.9405, 2 negative triangles 191: dt=0.9405, 1 negative triangles 192: dt=0.9405, 1 negative triangles 193: dt=0.9405, 1 negative triangles writing registered surface to ../surf/lh.sphere.reg... registration took 0.83 hours mris_register utimesec 2974.169913 mris_register stimesec 0.570039 mris_register ru_maxrss 232932 mris_register ru_ixrss 0 mris_register ru_idrss 0 mris_register ru_isrss 0 mris_register ru_minflt 42094 mris_register ru_majflt 0 mris_register ru_nswap 0 mris_register ru_inblock 5584 mris_register ru_oublock 9552 mris_register ru_msgsnd 0 mris_register ru_msgrcv 0 mris_register ru_nsignals 0 mris_register ru_nvcsw 160 mris_register ru_nivcsw 1373 FSRUNTIME@ mris_register 0.8263 hours 1 threads #-------------------------------------------- #@# Surf Reg rh za mrt 23 03:01:01 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_register -curv -rusage /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/touch/rusage.mris_register.rh.dat ../surf/rh.sphere /opt/freesurfer/6.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg using smoothwm curvature for final alignment cwd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts cmdline mris_register -curv -rusage /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/touch/rusage.mris_register.rh.dat ../surf/rh.sphere /opt/freesurfer/6.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg 0 inflated.H 1 sulc 2 smoothwm (computed) $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading surface from ../surf/rh.sphere... reading template parameterization from /opt/freesurfer/6.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=dccn-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 1 randomSeed 0 tol=5.0e-01, sigma=0.0, host=dccn-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading rh.sulc curvature mean = 0.000, std = 5.275 curvature mean = 0.020, std = 0.797 curvature mean = 0.036, std = 0.866 Starting MRISrigidBodyAlignGlobal() d=64.00 min @ (16.00, 0.00, 16.00) sse = 305747.5, tmin=0.8541 d=32.00 min @ (-8.00, -8.00, 8.00) sse = 252371.7, tmin=1.7200 d=16.00 min @ (0.00, 0.00, -4.00) sse = 224713.0, tmin=2.5926 d=8.00 min @ (0.00, 2.00, 0.00) sse = 218056.4, tmin=3.4670 d=4.00 min @ (1.00, 0.00, 0.00) sse = 217566.0, tmin=4.3400 d=2.00 min @ (-0.50, 0.00, 0.50) sse = 217083.6, tmin=5.2153 d=1.00 min @ (0.00, -0.25, 0.00) sse = 217018.2, tmin=6.0925 d=0.50 min @ (0.12, 0.12, -0.12) sse = 216963.5, tmin=6.9734 tol=1.0e+00, sigma=0.5, host=dccn-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization MRISrigidBodyAlignGlobal() done 6.97 min curvature mean = -0.022, std = 0.821 curvature mean = 0.010, std = 0.947 curvature mean = -0.026, std = 0.831 curvature mean = 0.003, std = 0.977 curvature mean = -0.026, std = 0.833 curvature mean = 0.000, std = 0.990 2 Reading smoothwm curvature mean = -0.047, std = 0.329 curvature mean = 0.027, std = 0.238 curvature mean = 0.086, std = 0.310 curvature mean = 0.023, std = 0.299 curvature mean = 0.049, std = 0.474 curvature mean = 0.022, std = 0.326 curvature mean = 0.029, std = 0.607 curvature mean = 0.022, std = 0.337 curvature mean = 0.012, std = 0.720 MRISregister() return, current seed 0 -01: dt=0.0000, 63 negative triangles 115: dt=0.9900, 63 negative triangles expanding nbhd size to 1 116: dt=0.9900, 84 negative triangles 117: dt=0.9900, 56 negative triangles 118: dt=0.9900, 48 negative triangles 119: dt=0.9900, 54 negative triangles 120: dt=0.9900, 49 negative triangles 121: dt=0.9900, 50 negative triangles 122: dt=0.9900, 39 negative triangles 123: dt=0.9900, 41 negative triangles 124: dt=0.9900, 37 negative triangles 125: dt=0.9900, 34 negative triangles 126: dt=0.9900, 32 negative triangles 127: dt=0.9900, 27 negative triangles 128: dt=0.9900, 22 negative triangles 129: dt=0.9900, 23 negative triangles 130: dt=0.9900, 26 negative triangles 131: dt=0.9900, 25 negative triangles 132: dt=0.9900, 20 negative triangles 133: dt=0.9900, 17 negative triangles 134: dt=0.9900, 11 negative triangles 135: dt=0.9900, 10 negative triangles 136: dt=0.9900, 9 negative triangles 137: dt=0.9900, 9 negative triangles 138: dt=0.9900, 5 negative triangles 139: dt=0.9900, 6 negative triangles 140: dt=0.9900, 3 negative triangles 141: dt=0.9900, 3 negative triangles 142: dt=0.9900, 3 negative triangles 143: dt=0.9900, 1 negative triangles 144: dt=0.9900, 1 negative triangles 145: dt=0.9900, 4 negative triangles 146: dt=0.9900, 1 negative triangles writing registered surface to ../surf/rh.sphere.reg... registration took 0.88 hours mris_register utimesec 3156.457244 mris_register stimesec 0.833054 mris_register ru_maxrss 235980 mris_register ru_ixrss 0 mris_register ru_idrss 0 mris_register ru_isrss 0 mris_register ru_minflt 383017 mris_register ru_majflt 0 mris_register ru_nswap 0 mris_register ru_inblock 15304 mris_register ru_oublock 9720 mris_register ru_msgsnd 0 mris_register ru_msgrcv 0 mris_register ru_nsignals 0 mris_register ru_nvcsw 194 mris_register ru_nivcsw 1357 FSRUNTIME@ mris_register 0.8770 hours 1 threads #-------------------------------------------- #@# Jacobian white lh za mrt 23 03:53:39 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_jacobian ../surf/lh.white.preaparc ../surf/lh.sphere.reg ../surf/lh.jacobian_white reading surface from ../surf/lh.white.preaparc... writing curvature file ../surf/lh.jacobian_white #-------------------------------------------- #@# Jacobian white rh za mrt 23 03:53:40 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_jacobian ../surf/rh.white.preaparc ../surf/rh.sphere.reg ../surf/rh.jacobian_white reading surface from ../surf/rh.white.preaparc... writing curvature file ../surf/rh.jacobian_white #-------------------------------------------- #@# AvgCurv lh za mrt 23 03:53:42 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mrisp_paint -a 5 /opt/freesurfer/6.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/lh.sphere.reg ../surf/lh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/lh.sphere.reg... reading template parameterization from /opt/freesurfer/6.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... writing curvature file to ../surf/lh.avg_curv... #-------------------------------------------- #@# AvgCurv rh za mrt 23 03:53:44 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mrisp_paint -a 5 /opt/freesurfer/6.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/rh.sphere.reg... reading template parameterization from /opt/freesurfer/6.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... writing curvature file to ../surf/rh.avg_curv... #----------------------------------------- #@# Cortical Parc lh za mrt 23 03:53:45 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub025 lh ../surf/lh.sphere.reg /opt/freesurfer/6.0/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading atlas from /opt/freesurfer/6.0/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.8 using min determinant for regularization = 0.006 0 singular and 342 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 860 labels changed using aseg relabeling using gibbs priors... 000: 2857 changed, 135752 examined... 001: 675 changed, 12390 examined... 002: 164 changed, 3781 examined... 003: 65 changed, 965 examined... 004: 33 changed, 367 examined... 005: 18 changed, 198 examined... 006: 9 changed, 108 examined... 007: 5 changed, 58 examined... 008: 1 changed, 22 examined... 009: 0 changed, 7 examined... 231 labels changed using aseg 000: 94 total segments, 42 labels (263 vertices) changed 001: 52 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 1 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1846 vertices marked for relabeling... 1846 labels changed in reclassification. writing output to ../label/lh.aparc.annot... classification took 0 minutes and 13 seconds. #----------------------------------------- #@# Cortical Parc rh za mrt 23 03:53:58 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub025 rh ../surf/rh.sphere.reg /opt/freesurfer/6.0/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading atlas from /opt/freesurfer/6.0/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.7 using min determinant for regularization = 0.004 0 singular and 309 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 1000 labels changed using aseg relabeling using gibbs priors... 000: 2716 changed, 138125 examined... 001: 641 changed, 11947 examined... 002: 137 changed, 3572 examined... 003: 55 changed, 811 examined... 004: 13 changed, 320 examined... 005: 3 changed, 89 examined... 006: 1 changed, 23 examined... 007: 0 changed, 5 examined... 174 labels changed using aseg 000: 92 total segments, 54 labels (193 vertices) changed 001: 38 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 5 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1475 vertices marked for relabeling... 1475 labels changed in reclassification. writing output to ../label/rh.aparc.annot... classification took 0 minutes and 12 seconds. #-------------------------------------------- #@# Make Pial Surf lh za mrt 23 03:54:10 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_make_surfaces -orig_white white.preaparc -orig_pial white.preaparc -aseg ../mri/aseg.presurf -mgz -T1 brain.finalsurfs sub025 lh using white.preaparc starting white location... using white.preaparc starting pial locations... using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/filled.mgz... reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/brain.finalsurfs.mgz... reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/../mri/aseg.presurf.mgz... reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/wm.mgz... 22994 bright wm thresholded. 657 bright non-wm voxels segmented. reading original surface position from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.orig... computing class statistics... border white: 279893 voxels (1.67%) border gray 299781 voxels (1.79%) WM (95.0): 96.0 +- 7.3 [70.0 --> 110.0] GM (76.0) : 72.3 +- 14.2 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 63.8 (was 70) setting MAX_BORDER_WHITE to 105.3 (was 105) setting MIN_BORDER_WHITE to 78.0 (was 85) setting MAX_CSF to 49.6 (was 40) setting MAX_GRAY to 90.7 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 63.8 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 35.4 (was 40) using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=98+-7.0, GM=78+-12.2 mean inside = 91.5, mean outside = 77.7 smoothing surface for 5 iterations... reading initial white vertex positions from white.preaparc... reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) repositioning cortical surface to gray/white boundary smoothing T1 volume with sigma = 2.000 vertex spacing 0.86 +- 0.27 (0.03-->4.17) (max @ vno 85266 --> 86441) face area 0.30 +- 0.16 (0.00-->3.12) mean absolute distance = 1.04 +- 1.09 4038 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... removing 1 vertex label from ripped group deleting segment 0 with 1 points - only 0.00% unknown deleting segment 2 with 249 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 3 with 3 points - only 0.00% unknown deleting segment 4 with 28 points - only 0.00% unknown deleting segment 5 with 5 points - only 0.00% unknown deleting segment 6 with 12 points - only 0.00% unknown deleting segment 7 with 41 points - only 0.00% unknown mean border=85.3, 412 (411) missing vertices, mean dist 0.6 [2.1 (%11.7)->0.9 (%88.3))] %23 local maxima, %71 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=dccn-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.87 +- 0.26 (0.04-->3.99) (max @ vno 97033 --> 97980) face area 0.30 +- 0.16 (0.00-->3.67) mean absolute distance = 0.61 +- 0.96 6116 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=1914067.8, rms=7.115 001: dt: 0.5000, sse=1171506.2, rms=4.668 (34.394%) 002: dt: 0.5000, sse=884960.0, rms=3.302 (29.250%) 003: dt: 0.5000, sse=788761.7, rms=2.684 (18.723%) 004: dt: 0.5000, sse=733916.7, rms=2.397 (10.708%) 005: dt: 0.5000, sse=729111.3, rms=2.289 (4.490%) 006: dt: 0.5000, sse=719563.8, rms=2.195 (4.106%) rms = 2.19, time step reduction 1 of 3 to 0.250... 007: dt: 0.5000, sse=712897.7, rms=2.187 (0.362%) 008: dt: 0.2500, sse=656534.9, rms=1.546 (29.330%) 009: dt: 0.2500, sse=648395.9, rms=1.434 (7.236%) rms = 1.41, time step reduction 2 of 3 to 0.125... 010: dt: 0.2500, sse=648244.8, rms=1.414 (1.411%) rms = 1.39, time step reduction 3 of 3 to 0.062... 011: dt: 0.1250, sse=643162.1, rms=1.394 (1.398%) positioning took 0.9 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 10 points - only 0.00% unknown deleting segment 1 with 17 points - only 0.00% unknown deleting segment 2 with 189 points - only 0.00% unknown removing 4 vertex label from ripped group deleting segment 3 with 4 points - only 0.00% unknown deleting segment 4 with 8 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 5 with 3 points - only 0.00% unknown deleting segment 6 with 9 points - only 0.00% unknown deleting segment 7 with 23 points - only 0.00% unknown mean border=87.7, 267 (148) missing vertices, mean dist -0.4 [0.8 (%62.7)->0.2 (%37.3))] %42 local maxima, %53 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=dccn-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.86 +- 0.26 (0.04-->4.36) (max @ vno 97033 --> 97980) face area 0.32 +- 0.17 (0.00-->4.34) mean absolute distance = 0.49 +- 0.59 4140 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=966357.1, rms=3.628 012: dt: 0.5000, sse=794856.1, rms=2.493 (31.283%) 013: dt: 0.5000, sse=742382.2, rms=2.057 (17.491%) 014: dt: 0.5000, sse=727442.3, rms=1.954 (5.016%) 015: dt: 0.5000, sse=720039.9, rms=1.900 (2.743%) rms = 1.94, time step reduction 1 of 3 to 0.250... 016: dt: 0.2500, sse=690956.9, rms=1.548 (18.538%) 017: dt: 0.2500, sse=684296.7, rms=1.364 (11.899%) rms = 1.31, time step reduction 2 of 3 to 0.125... 018: dt: 0.2500, sse=681671.1, rms=1.314 (3.644%) rms = 1.29, time step reduction 3 of 3 to 0.062... 019: dt: 0.1250, sse=674153.2, rms=1.288 (1.969%) positioning took 0.7 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 12 points - only 0.00% unknown deleting segment 1 with 9 points - only 0.00% unknown deleting segment 2 with 182 points - only 0.00% unknown removing 4 vertex label from ripped group deleting segment 3 with 4 points - only 0.00% unknown deleting segment 4 with 12 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 5 with 3 points - only 0.00% unknown deleting segment 6 with 12 points - only 0.00% unknown deleting segment 7 with 27 points - only 0.00% unknown mean border=90.2, 298 (130) missing vertices, mean dist -0.3 [0.6 (%67.6)->0.3 (%32.4))] %65 local maxima, %30 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=dccn-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.85 +- 0.27 (0.05-->4.13) (max @ vno 97033 --> 97980) face area 0.31 +- 0.17 (0.00-->3.91) mean absolute distance = 0.36 +- 0.43 4111 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=925427.9, rms=3.514 020: dt: 0.5000, sse=745256.9, rms=2.031 (42.200%) 021: dt: 0.5000, sse=711256.4, rms=1.661 (18.197%) rms = 1.68, time step reduction 1 of 3 to 0.250... 022: dt: 0.2500, sse=671547.3, rms=1.390 (16.328%) 023: dt: 0.2500, sse=658177.2, rms=1.237 (11.009%) rms = 1.20, time step reduction 2 of 3 to 0.125... 024: dt: 0.2500, sse=660444.6, rms=1.201 (2.950%) rms = 1.18, time step reduction 3 of 3 to 0.062... 025: dt: 0.1250, sse=654531.6, rms=1.179 (1.791%) positioning took 0.6 minutes inhibiting deformation at non-cortical midline structures... removing 1 vertex label from ripped group deleting segment 0 with 1 points - only 0.00% unknown deleting segment 1 with 8 points - only 0.00% unknown deleting segment 2 with 182 points - only 0.00% unknown removing 4 vertex label from ripped group deleting segment 3 with 4 points - only 0.00% unknown deleting segment 4 with 22 points - only 0.00% unknown removing 1 vertex label from ripped group deleting segment 5 with 1 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 6 with 3 points - only 0.00% unknown deleting segment 7 with 12 points - only 0.00% unknown deleting segment 8 with 32 points - only 0.00% unknown mean border=91.3, 354 (107) missing vertices, mean dist -0.1 [0.4 (%60.1)->0.3 (%39.9))] %76 local maxima, %18 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=dccn-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white... writing smoothed curvature to lh.curv 000: dt: 0.0000, sse=707809.7, rms=1.956 026: dt: 0.5000, sse=672735.8, rms=1.209 (38.182%) rms = 1.44, time step reduction 1 of 3 to 0.250... 027: dt: 0.2500, sse=638778.4, rms=1.006 (16.809%) rms = 0.98, time step reduction 2 of 3 to 0.125... 028: dt: 0.2500, sse=645936.8, rms=0.975 (3.077%) rms = 0.95, time step reduction 3 of 3 to 0.062... 029: dt: 0.1250, sse=630150.1, rms=0.950 (2.517%) positioning took 0.4 minutes generating cortex label... 19 non-cortical segments detected only using segment with 8574 vertices erasing segment 1 (vno[0] = 65711) erasing segment 2 (vno[0] = 66911) erasing segment 3 (vno[0] = 68094) erasing segment 4 (vno[0] = 68571) erasing segment 5 (vno[0] = 69201) erasing segment 6 (vno[0] = 72561) erasing segment 7 (vno[0] = 76938) erasing segment 8 (vno[0] = 77706) erasing segment 9 (vno[0] = 77960) erasing segment 10 (vno[0] = 81028) erasing segment 11 (vno[0] = 85621) erasing segment 12 (vno[0] = 91612) erasing segment 13 (vno[0] = 91954) erasing segment 14 (vno[0] = 94628) erasing segment 15 (vno[0] = 96987) erasing segment 16 (vno[0] = 97960) erasing segment 17 (vno[0] = 98804) erasing segment 18 (vno[0] = 103101) writing cortex label to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/lh.cortex.label... writing curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.curv writing smoothed area to lh.area writing curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.area vertex spacing 0.86 +- 0.28 (0.03-->4.22) (max @ vno 97033 --> 97980) face area 0.31 +- 0.17 (0.00-->3.94) repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... removing 1 vertex label from ripped group deleting segment 0 with 1 points - only 0.00% unknown removing 1 vertex label from ripped group deleting segment 2 with 1 points - only 0.00% unknown removing 1 vertex label from ripped group deleting segment 3 with 1 points - only 0.00% unknown removing 2 vertex label from ripped group deleting segment 4 with 2 points - only 0.00% unknown smoothing surface for 5 iterations... reading initial pial vertex positions from white.preaparc... mean border=59.9, 376 (376) missing vertices, mean dist 2.4 [0.0 (%0.0)->2.7 (%100.0))] %39 local maxima, %45 large gradients and %11 min vals, 84 gradients ignored perforing initial smooth deformation to move away from white surface tol=1.0e-04, sigma=2.0, host=dccn-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=26749552.0, rms=31.912 001: dt: 0.0500, sse=24646028.0, rms=30.603 (4.103%) 002: dt: 0.0500, sse=23163810.0, rms=29.645 (3.129%) 003: dt: 0.0500, sse=22021960.0, rms=28.886 (2.562%) 004: dt: 0.0500, sse=21085692.0, rms=28.248 (2.209%) 005: dt: 0.0500, sse=20280818.0, rms=27.688 (1.983%) 006: dt: 0.0500, sse=19568016.0, rms=27.182 (1.827%) 007: dt: 0.0500, sse=18921442.0, rms=26.715 (1.719%) 008: dt: 0.0500, sse=18323938.0, rms=26.276 (1.644%) 009: dt: 0.0500, sse=17763952.0, rms=25.857 (1.592%) 010: dt: 0.0500, sse=17233380.0, rms=25.455 (1.557%) positioning took 0.8 minutes mean border=59.8, 191 (151) missing vertices, mean dist 1.9 [0.1 (%0.0)->2.1 (%100.0))] %39 local maxima, %45 large gradients and %10 min vals, 95 gradients ignored tol=1.0e-04, sigma=2.0, host=dccn-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=18130992.0, rms=26.113 011: dt: 0.0500, sse=17622098.0, rms=25.731 (1.462%) 012: dt: 0.0500, sse=17134260.0, rms=25.360 (1.443%) 013: dt: 0.0500, sse=16665183.0, rms=24.997 (1.428%) 014: dt: 0.0500, sse=16212374.0, rms=24.643 (1.419%) 015: dt: 0.0500, sse=15774163.0, rms=24.294 (1.413%) 016: dt: 0.0500, sse=15350450.0, rms=23.953 (1.406%) 017: dt: 0.0500, sse=14940608.0, rms=23.618 (1.399%) 018: dt: 0.0500, sse=14544142.0, rms=23.289 (1.392%) 019: dt: 0.0500, sse=14159648.0, rms=22.966 (1.389%) 020: dt: 0.0500, sse=13787325.0, rms=22.648 (1.383%) positioning took 0.8 minutes mean border=59.6, 197 (114) missing vertices, mean dist 1.5 [0.1 (%0.8)->1.7 (%99.2))] %39 local maxima, %46 large gradients and %10 min vals, 93 gradients ignored tol=1.0e-04, sigma=2.0, host=dccn-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=13891680.0, rms=22.738 021: dt: 0.0500, sse=13517400.0, rms=22.416 (1.418%) 022: dt: 0.0500, sse=13155030.0, rms=22.099 (1.413%) 023: dt: 0.0500, sse=12799996.0, rms=21.784 (1.424%) 024: dt: 0.0500, sse=12458453.0, rms=21.477 (1.410%) 025: dt: 0.0500, sse=12130419.0, rms=21.178 (1.394%) 026: dt: 0.0500, sse=11814533.0, rms=20.885 (1.380%) 027: dt: 0.0500, sse=11506669.0, rms=20.597 (1.383%) 028: dt: 0.0500, sse=11202855.0, rms=20.307 (1.404%) 029: dt: 0.0500, sse=10903930.0, rms=20.019 (1.421%) 030: dt: 0.0500, sse=10609802.0, rms=19.731 (1.439%) positioning took 0.8 minutes mean border=59.5, 196 (97) missing vertices, mean dist 1.2 [0.1 (%9.6)->1.5 (%90.4))] %39 local maxima, %46 large gradients and % 9 min vals, 78 gradients ignored tol=1.0e-04, sigma=2.0, host=dccn-, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=10750918.0, rms=19.867 031: dt: 0.5000, sse=8597885.0, rms=17.636 (11.230%) 032: dt: 0.5000, sse=6826754.0, rms=15.557 (11.787%) 033: dt: 0.5000, sse=5351888.0, rms=13.592 (12.632%) 034: dt: 0.5000, sse=4182710.5, rms=11.794 (13.228%) 035: dt: 0.5000, sse=3327106.5, rms=10.287 (12.779%) 036: dt: 0.5000, sse=2730485.8, rms=9.080 (11.730%) 037: dt: 0.5000, sse=2337573.2, rms=8.195 (9.747%) 038: dt: 0.5000, sse=2085881.4, rms=7.563 (7.720%) 039: dt: 0.5000, sse=1925361.8, rms=7.139 (5.608%) 040: dt: 0.5000, sse=1815060.4, rms=6.820 (4.462%) 041: dt: 0.5000, sse=1738750.9, rms=6.600 (3.222%) 042: dt: 0.5000, sse=1679883.8, rms=6.415 (2.806%) 043: dt: 0.5000, sse=1636663.9, rms=6.286 (2.017%) 044: dt: 0.5000, sse=1602432.9, rms=6.170 (1.846%) 045: dt: 0.5000, sse=1576998.2, rms=6.093 (1.238%) 046: dt: 0.5000, sse=1557917.5, rms=6.024 (1.143%) 047: dt: 0.5000, sse=1540086.0, rms=5.971 (0.875%) rms = 5.92, time step reduction 1 of 3 to 0.250... 048: dt: 0.5000, sse=1528332.0, rms=5.925 (0.777%) 049: dt: 0.2500, sse=1254675.5, rms=4.891 (17.447%) 050: dt: 0.2500, sse=1189315.1, rms=4.618 (5.580%) 051: dt: 0.2500, sse=1177742.9, rms=4.562 (1.202%) rms = 4.53, time step reduction 2 of 3 to 0.125... 052: dt: 0.2500, sse=1170064.9, rms=4.529 (0.742%) 053: dt: 0.1250, sse=1129558.2, rms=4.340 (4.164%) rms = 4.32, time step reduction 3 of 3 to 0.062... 054: dt: 0.1250, sse=1125164.2, rms=4.319 (0.485%) positioning took 2.2 minutes mean border=57.6, 697 (34) missing vertices, mean dist 0.2 [0.2 (%37.2)->0.4 (%62.8))] %62 local maxima, %25 large gradients and % 7 min vals, 100 gradients ignored tol=1.0e-04, sigma=1.0, host=dccn-, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=1483736.5, rms=5.234 rms = 5.24, time step reduction 1 of 3 to 0.250... 055: dt: 0.2500, sse=1277596.4, rms=4.385 (16.225%) 056: dt: 0.2500, sse=1139167.6, rms=3.698 (15.657%) 057: dt: 0.2500, sse=1091340.9, rms=3.441 (6.949%) 058: dt: 0.2500, sse=1069778.5, rms=3.320 (3.535%) 059: dt: 0.2500, sse=1056162.1, rms=3.242 (2.351%) rms = 3.19, time step reduction 2 of 3 to 0.125... 060: dt: 0.2500, sse=1047704.4, rms=3.194 (1.462%) 061: dt: 0.1250, sse=1016253.5, rms=2.984 (6.591%) rms = 2.94, time step reduction 3 of 3 to 0.062... 062: dt: 0.1250, sse=1009207.4, rms=2.938 (1.547%) positioning took 0.8 minutes mean border=56.4, 790 (33) missing vertices, mean dist 0.1 [0.1 (%45.1)->0.3 (%54.9))] %72 local maxima, %16 large gradients and % 6 min vals, 79 gradients ignored tol=1.0e-04, sigma=0.5, host=dccn-, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=1107492.6, rms=3.567 rms = 4.42, time step reduction 1 of 3 to 0.250... 063: dt: 0.2500, sse=1031481.9, rms=3.118 (12.599%) 064: dt: 0.2500, sse=1012848.7, rms=3.000 (3.779%) rms = 2.95, time step reduction 2 of 3 to 0.125... 065: dt: 0.2500, sse=1004293.6, rms=2.952 (1.588%) 066: dt: 0.1250, sse=988830.2, rms=2.843 (3.719%) rms = 2.82, time step reduction 3 of 3 to 0.062... 067: dt: 0.1250, sse=984788.2, rms=2.816 (0.925%) positioning took 0.5 minutes mean border=55.6, 1663 (32) missing vertices, mean dist 0.1 [0.1 (%48.8)->0.3 (%51.2))] %73 local maxima, %15 large gradients and % 6 min vals, 87 gradients ignored tol=1.0e-04, sigma=0.2, host=dccn-, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.pial... writing smoothed curvature to lh.curv.pial 000: dt: 0.0000, sse=1023715.9, rms=3.075 rms = 3.80, time step reduction 1 of 3 to 0.250... 068: dt: 0.2500, sse=985346.3, rms=2.815 (8.468%) 069: dt: 0.2500, sse=972054.9, rms=2.728 (3.081%) rms = 2.69, time step reduction 2 of 3 to 0.125... 070: dt: 0.2500, sse=965930.4, rms=2.693 (1.295%) 071: dt: 0.1250, sse=952765.9, rms=2.593 (3.699%) rms = 2.57, time step reduction 3 of 3 to 0.062... 072: dt: 0.1250, sse=949376.8, rms=2.570 (0.900%) positioning took 0.5 minutes writing curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.curv.pial writing smoothed area to lh.area.pial writing curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.area.pial vertex spacing 0.94 +- 0.40 (0.06-->6.77) (max @ vno 89040 --> 89023) face area 0.36 +- 0.28 (0.00-->7.63) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 135752 vertices processed 25000 of 135752 vertices processed 50000 of 135752 vertices processed 75000 of 135752 vertices processed 100000 of 135752 vertices processed 125000 of 135752 vertices processed 0 of 135752 vertices processed 25000 of 135752 vertices processed 50000 of 135752 vertices processed 75000 of 135752 vertices processed 100000 of 135752 vertices processed 125000 of 135752 vertices processed thickness calculation complete, 606:2266 truncations. 40966 vertices at 0 distance 96438 vertices at 1 distance 69649 vertices at 2 distance 31648 vertices at 3 distance 12211 vertices at 4 distance 4111 vertices at 5 distance 1369 vertices at 6 distance 562 vertices at 7 distance 234 vertices at 8 distance 93 vertices at 9 distance 51 vertices at 10 distance 30 vertices at 11 distance 18 vertices at 12 distance 19 vertices at 13 distance 13 vertices at 14 distance 11 vertices at 15 distance 12 vertices at 16 distance 14 vertices at 17 distance 11 vertices at 18 distance 10 vertices at 19 distance 26 vertices at 20 distance writing curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.thickness positioning took 12.3 minutes #-------------------------------------------- #@# Make Pial Surf rh za mrt 23 04:06:29 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_make_surfaces -orig_white white.preaparc -orig_pial white.preaparc -aseg ../mri/aseg.presurf -mgz -T1 brain.finalsurfs sub025 rh using white.preaparc starting white location... using white.preaparc starting pial locations... using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/filled.mgz... reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/brain.finalsurfs.mgz... reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/../mri/aseg.presurf.mgz... reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/wm.mgz... 22994 bright wm thresholded. 657 bright non-wm voxels segmented. reading original surface position from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.orig... computing class statistics... border white: 279893 voxels (1.67%) border gray 299781 voxels (1.79%) WM (95.0): 96.0 +- 7.3 [70.0 --> 110.0] GM (76.0) : 72.3 +- 14.2 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 62.8 (was 70) setting MAX_BORDER_WHITE to 105.3 (was 105) setting MIN_BORDER_WHITE to 77.0 (was 85) setting MAX_CSF to 48.6 (was 40) setting MAX_GRAY to 90.7 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 62.8 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 34.4 (was 40) using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=98+-7.8, GM=77+-13.0 mean inside = 91.3, mean outside = 77.0 smoothing surface for 5 iterations... reading initial white vertex positions from white.preaparc... reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) repositioning cortical surface to gray/white boundary smoothing T1 volume with sigma = 2.000 vertex spacing 0.86 +- 0.27 (0.04-->4.86) (max @ vno 88374 --> 88388) face area 0.31 +- 0.16 (0.00-->3.85) mean absolute distance = 1.04 +- 1.08 3817 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... deleting segment 1 with 31 points - only 0.00% unknown deleting segment 2 with 181 points - only 0.00% unknown removing 4 vertex label from ripped group deleting segment 3 with 4 points - only 0.00% unknown deleting segment 4 with 53 points - only 0.00% unknown deleting segment 5 with 61 points - only 0.00% unknown removing 1 vertex label from ripped group deleting segment 6 with 1 points - only 0.00% unknown mean border=85.3, 321 (321) missing vertices, mean dist 0.6 [1.9 (%12.4)->0.9 (%87.6))] %25 local maxima, %70 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=dccn-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.87 +- 0.26 (0.10-->4.44) (max @ vno 88374 --> 88388) face area 0.31 +- 0.16 (0.00-->3.96) mean absolute distance = 0.62 +- 0.97 5906 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=1997104.9, rms=7.236 001: dt: 0.5000, sse=1235490.6, rms=4.840 (33.116%) 002: dt: 0.5000, sse=923581.9, rms=3.449 (28.747%) 003: dt: 0.5000, sse=809098.9, rms=2.804 (18.702%) 004: dt: 0.5000, sse=762860.8, rms=2.480 (11.531%) 005: dt: 0.5000, sse=755700.8, rms=2.356 (5.023%) 006: dt: 0.5000, sse=735172.1, rms=2.246 (4.674%) rms = 2.24, time step reduction 1 of 3 to 0.250... 007: dt: 0.5000, sse=738223.6, rms=2.245 (0.047%) 008: dt: 0.2500, sse=676245.8, rms=1.564 (30.311%) 009: dt: 0.2500, sse=667380.4, rms=1.431 (8.505%) rms = 1.40, time step reduction 2 of 3 to 0.125... 010: dt: 0.2500, sse=670106.8, rms=1.403 (2.002%) rms = 1.38, time step reduction 3 of 3 to 0.062... 011: dt: 0.1250, sse=659851.1, rms=1.379 (1.697%) positioning took 1.0 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 154 points - only 0.00% unknown removing 4 vertex label from ripped group deleting segment 1 with 4 points - only 0.00% unknown removing 1 vertex label from ripped group deleting segment 2 with 1 points - only 0.00% unknown deleting segment 3 with 34 points - only 0.00% unknown mean border=87.7, 184 (87) missing vertices, mean dist -0.4 [0.9 (%62.7)->0.2 (%37.3))] %42 local maxima, %53 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=dccn-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.86 +- 0.26 (0.07-->5.23) (max @ vno 76951 --> 76952) face area 0.32 +- 0.17 (0.00-->4.40) mean absolute distance = 0.51 +- 0.61 4682 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=1014057.8, rms=3.766 012: dt: 0.5000, sse=826975.9, rms=2.616 (30.534%) 013: dt: 0.5000, sse=764260.0, rms=2.164 (17.253%) 014: dt: 0.5000, sse=752573.8, rms=2.053 (5.171%) 015: dt: 0.5000, sse=744292.6, rms=1.981 (3.509%) rms = 2.01, time step reduction 1 of 3 to 0.250... 016: dt: 0.2500, sse=710100.2, rms=1.608 (18.792%) 017: dt: 0.2500, sse=699703.2, rms=1.404 (12.712%) 018: dt: 0.2500, sse=693041.8, rms=1.334 (4.962%) rms = 1.30, time step reduction 2 of 3 to 0.125... 019: dt: 0.2500, sse=696723.7, rms=1.296 (2.902%) rms = 1.27, time step reduction 3 of 3 to 0.062... 020: dt: 0.1250, sse=698040.7, rms=1.274 (1.684%) positioning took 0.8 minutes inhibiting deformation at non-cortical midline structures... removing 1 vertex label from ripped group deleting segment 0 with 1 points - only 0.00% unknown deleting segment 1 with 147 points - only 0.00% unknown deleting segment 2 with 45 points - only 0.00% unknown deleting segment 3 with 48 points - only 0.00% unknown mean border=90.2, 194 (59) missing vertices, mean dist -0.3 [0.6 (%67.3)->0.3 (%32.7))] %64 local maxima, %31 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=dccn-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.86 +- 0.27 (0.04-->5.42) (max @ vno 76951 --> 76952) face area 0.31 +- 0.17 (0.00-->4.36) mean absolute distance = 0.38 +- 0.45 3794 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=976944.1, rms=3.612 021: dt: 0.5000, sse=765079.3, rms=2.130 (41.035%) 022: dt: 0.5000, sse=722530.0, rms=1.711 (19.644%) rms = 1.73, time step reduction 1 of 3 to 0.250... 023: dt: 0.2500, sse=685995.2, rms=1.431 (16.380%) 024: dt: 0.2500, sse=692994.6, rms=1.269 (11.303%) rms = 1.23, time step reduction 2 of 3 to 0.125... 025: dt: 0.2500, sse=678338.0, rms=1.229 (3.163%) rms = 1.21, time step reduction 3 of 3 to 0.062... 026: dt: 0.1250, sse=687415.2, rms=1.207 (1.770%) positioning took 0.6 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group deleting segment 0 with 3 points - only 0.00% unknown deleting segment 1 with 154 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 2 with 3 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 3 with 3 points - only 0.00% unknown deleting segment 4 with 78 points - only 0.00% unknown deleting segment 5 with 51 points - only 0.00% unknown removing 1 vertex label from ripped group deleting segment 6 with 1 points - only 0.00% unknown mean border=91.3, 258 (42) missing vertices, mean dist -0.1 [0.4 (%60.3)->0.3 (%39.7))] %76 local maxima, %19 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=dccn-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white... writing smoothed curvature to rh.curv 000: dt: 0.0000, sse=742864.2, rms=1.967 027: dt: 0.5000, sse=682180.5, rms=1.222 (37.877%) rms = 1.47, time step reduction 1 of 3 to 0.250... 028: dt: 0.2500, sse=654828.6, rms=1.023 (16.298%) rms = 0.99, time step reduction 2 of 3 to 0.125... 029: dt: 0.2500, sse=669624.6, rms=0.992 (3.002%) rms = 0.97, time step reduction 3 of 3 to 0.062... 030: dt: 0.1250, sse=656970.3, rms=0.966 (2.585%) positioning took 0.4 minutes generating cortex label... 8 non-cortical segments detected only using segment with 8167 vertices erasing segment 0 (vno[0] = 31474) erasing segment 2 (vno[0] = 81930) erasing segment 3 (vno[0] = 93276) erasing segment 4 (vno[0] = 99538) erasing segment 5 (vno[0] = 104613) erasing segment 6 (vno[0] = 107429) erasing segment 7 (vno[0] = 137332) writing cortex label to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/rh.cortex.label... writing curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.curv writing smoothed area to rh.area writing curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.area vertex spacing 0.86 +- 0.28 (0.02-->5.41) (max @ vno 76951 --> 76952) face area 0.31 +- 0.17 (0.00-->4.38) repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... removing 1 vertex label from ripped group deleting segment 0 with 1 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 3 with 3 points - only 0.00% unknown smoothing surface for 5 iterations... reading initial pial vertex positions from white.preaparc... mean border=59.3, 313 (313) missing vertices, mean dist 2.4 [6.2 (%0.0)->2.7 (%100.0))] %33 local maxima, %49 large gradients and %13 min vals, 94 gradients ignored perforing initial smooth deformation to move away from white surface tol=1.0e-04, sigma=2.0, host=dccn-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=28519448.0, rms=32.605 001: dt: 0.0500, sse=26337428.0, rms=31.305 (3.986%) 002: dt: 0.0500, sse=24784426.0, rms=30.346 (3.064%) 003: dt: 0.0500, sse=23584258.0, rms=29.583 (2.513%) 004: dt: 0.0500, sse=22597590.0, rms=28.941 (2.171%) 005: dt: 0.0500, sse=21748060.0, rms=28.376 (1.951%) 006: dt: 0.0500, sse=20992404.0, rms=27.865 (1.804%) 007: dt: 0.0500, sse=20304514.0, rms=27.390 (1.702%) 008: dt: 0.0500, sse=19667078.0, rms=26.943 (1.632%) 009: dt: 0.0500, sse=19068414.0, rms=26.517 (1.584%) 010: dt: 0.0500, sse=18501264.0, rms=26.106 (1.549%) positioning took 0.8 minutes mean border=59.2, 206 (141) missing vertices, mean dist 1.8 [0.1 (%0.0)->2.1 (%100.0))] %33 local maxima, %50 large gradients and %12 min vals, 90 gradients ignored tol=1.0e-04, sigma=2.0, host=dccn-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=19463686.0, rms=26.785 011: dt: 0.0500, sse=18918980.0, rms=26.396 (1.455%) 012: dt: 0.0500, sse=18395522.0, rms=26.015 (1.440%) 013: dt: 0.0500, sse=17891066.0, rms=25.644 (1.429%) 014: dt: 0.0500, sse=17403762.0, rms=25.280 (1.420%) 015: dt: 0.0500, sse=16932064.0, rms=24.922 (1.415%) 016: dt: 0.0500, sse=16475204.0, rms=24.570 (1.410%) 017: dt: 0.0500, sse=16031817.0, rms=24.225 (1.408%) 018: dt: 0.0500, sse=15602732.0, rms=23.885 (1.402%) 019: dt: 0.0500, sse=15186466.0, rms=23.551 (1.399%) 020: dt: 0.0500, sse=14782444.0, rms=23.222 (1.397%) positioning took 0.8 minutes mean border=58.9, 191 (96) missing vertices, mean dist 1.5 [0.1 (%0.8)->1.7 (%99.2))] %33 local maxima, %50 large gradients and %12 min vals, 77 gradients ignored tol=1.0e-04, sigma=2.0, host=dccn-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=14932970.0, rms=23.345 021: dt: 0.0500, sse=14524267.0, rms=23.010 (1.438%) 022: dt: 0.0500, sse=14126964.0, rms=22.678 (1.439%) 023: dt: 0.0500, sse=13735868.0, rms=22.348 (1.458%) 024: dt: 0.0500, sse=13358773.0, rms=22.024 (1.448%) 025: dt: 0.0500, sse=12995337.0, rms=21.708 (1.437%) 026: dt: 0.0500, sse=12644182.0, rms=21.397 (1.429%) 027: dt: 0.0500, sse=12300681.0, rms=21.089 (1.439%) 028: dt: 0.0500, sse=11960289.0, rms=20.780 (1.468%) 029: dt: 0.0500, sse=11624237.0, rms=20.469 (1.494%) 030: dt: 0.0500, sse=11292613.0, rms=20.158 (1.519%) positioning took 0.8 minutes mean border=58.8, 183 (74) missing vertices, mean dist 1.2 [0.1 (%9.8)->1.5 (%90.2))] %33 local maxima, %51 large gradients and %11 min vals, 68 gradients ignored tol=1.0e-04, sigma=2.0, host=dccn-, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=11418174.0, rms=20.275 031: dt: 0.5000, sse=8986130.0, rms=17.849 (11.963%) 032: dt: 0.5000, sse=7002038.0, rms=15.587 (12.674%) 033: dt: 0.5000, sse=5423894.0, rms=13.528 (13.208%) 034: dt: 0.5000, sse=4217228.5, rms=11.702 (13.504%) 035: dt: 0.5000, sse=3369800.5, rms=10.232 (12.559%) 036: dt: 0.5000, sse=2794563.8, rms=9.090 (11.163%) 037: dt: 0.5000, sse=2423767.2, rms=8.277 (8.937%) 038: dt: 0.5000, sse=2171782.8, rms=7.665 (7.403%) 039: dt: 0.5000, sse=2007125.8, rms=7.245 (5.478%) 040: dt: 0.5000, sse=1887676.4, rms=6.913 (4.583%) 041: dt: 0.5000, sse=1810741.8, rms=6.700 (3.075%) 042: dt: 0.5000, sse=1751512.0, rms=6.520 (2.693%) 043: dt: 0.5000, sse=1707719.6, rms=6.395 (1.919%) 044: dt: 0.5000, sse=1673570.6, rms=6.284 (1.738%) 045: dt: 0.5000, sse=1649629.0, rms=6.215 (1.092%) 046: dt: 0.5000, sse=1625860.5, rms=6.133 (1.314%) 047: dt: 0.5000, sse=1607265.0, rms=6.082 (0.838%) 048: dt: 0.5000, sse=1592908.5, rms=6.028 (0.889%) rms = 5.99, time step reduction 1 of 3 to 0.250... 049: dt: 0.5000, sse=1579198.1, rms=5.990 (0.619%) 050: dt: 0.2500, sse=1291661.6, rms=4.930 (17.707%) 051: dt: 0.2500, sse=1211408.0, rms=4.611 (6.473%) rms = 4.58, time step reduction 2 of 3 to 0.125... 052: dt: 0.2500, sse=1206023.9, rms=4.579 (0.676%) 053: dt: 0.1250, sse=1145615.6, rms=4.309 (5.907%) rms = 4.28, time step reduction 3 of 3 to 0.062... 054: dt: 0.1250, sse=1138612.4, rms=4.277 (0.747%) positioning took 2.2 minutes mean border=57.3, 865 (25) missing vertices, mean dist 0.2 [0.2 (%41.0)->0.4 (%59.0))] %55 local maxima, %31 large gradients and % 8 min vals, 89 gradients ignored tol=1.0e-04, sigma=1.0, host=dccn-, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=1447025.6, rms=5.042 rms = 5.26, time step reduction 1 of 3 to 0.250... 055: dt: 0.2500, sse=1260766.6, rms=4.264 (15.425%) 056: dt: 0.2500, sse=1138913.4, rms=3.660 (14.154%) 057: dt: 0.2500, sse=1092551.5, rms=3.416 (6.686%) 058: dt: 0.2500, sse=1069347.1, rms=3.287 (3.762%) 059: dt: 0.2500, sse=1056344.8, rms=3.214 (2.220%) rms = 3.17, time step reduction 2 of 3 to 0.125... 060: dt: 0.2500, sse=1047747.8, rms=3.168 (1.445%) 061: dt: 0.1250, sse=1011379.4, rms=2.926 (7.641%) rms = 2.88, time step reduction 3 of 3 to 0.062... 062: dt: 0.1250, sse=1003883.0, rms=2.877 (1.672%) positioning took 0.8 minutes mean border=56.5, 1063 (21) missing vertices, mean dist 0.1 [0.1 (%49.4)->0.3 (%50.6))] %66 local maxima, %21 large gradients and % 7 min vals, 93 gradients ignored tol=1.0e-04, sigma=0.5, host=dccn-, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=1083066.1, rms=3.410 rms = 4.30, time step reduction 1 of 3 to 0.250... 063: dt: 0.2500, sse=1020364.8, rms=3.037 (10.953%) 064: dt: 0.2500, sse=1006974.4, rms=2.957 (2.629%) rms = 2.93, time step reduction 2 of 3 to 0.125... 065: dt: 0.2500, sse=1001377.9, rms=2.930 (0.921%) 066: dt: 0.1250, sse=985507.4, rms=2.820 (3.747%) rms = 2.80, time step reduction 3 of 3 to 0.062... 067: dt: 0.1250, sse=981790.1, rms=2.796 (0.856%) positioning took 0.5 minutes mean border=55.7, 1855 (21) missing vertices, mean dist 0.1 [0.1 (%51.1)->0.3 (%48.9))] %67 local maxima, %20 large gradients and % 7 min vals, 94 gradients ignored tol=1.0e-04, sigma=0.2, host=dccn-, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.pial... writing smoothed curvature to rh.curv.pial 000: dt: 0.0000, sse=1021141.2, rms=3.049 rms = 3.77, time step reduction 1 of 3 to 0.250... 068: dt: 0.2500, sse=985792.5, rms=2.815 (7.684%) 069: dt: 0.2500, sse=975350.5, rms=2.750 (2.309%) rms = 2.72, time step reduction 2 of 3 to 0.125... 070: dt: 0.2500, sse=970240.9, rms=2.724 (0.948%) 071: dt: 0.1250, sse=956986.9, rms=2.626 (3.605%) rms = 2.60, time step reduction 3 of 3 to 0.062... 072: dt: 0.1250, sse=953900.2, rms=2.605 (0.783%) positioning took 0.6 minutes writing curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.curv.pial writing smoothed area to rh.area.pial writing curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.area.pial vertex spacing 0.93 +- 0.39 (0.05-->7.90) (max @ vno 86308 --> 85295) face area 0.35 +- 0.27 (0.00-->6.90) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 138125 vertices processed 25000 of 138125 vertices processed 50000 of 138125 vertices processed 75000 of 138125 vertices processed 100000 of 138125 vertices processed 125000 of 138125 vertices processed 0 of 138125 vertices processed 25000 of 138125 vertices processed 50000 of 138125 vertices processed 75000 of 138125 vertices processed 100000 of 138125 vertices processed 125000 of 138125 vertices processed thickness calculation complete, 380:2089 truncations. 43638 vertices at 0 distance 97767 vertices at 1 distance 70617 vertices at 2 distance 31856 vertices at 3 distance 12235 vertices at 4 distance 4397 vertices at 5 distance 1472 vertices at 6 distance 548 vertices at 7 distance 233 vertices at 8 distance 113 vertices at 9 distance 51 vertices at 10 distance 36 vertices at 11 distance 25 vertices at 12 distance 17 vertices at 13 distance 24 vertices at 14 distance 9 vertices at 15 distance 10 vertices at 16 distance 6 vertices at 17 distance 10 vertices at 18 distance 4 vertices at 19 distance 20 vertices at 20 distance writing curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.thickness positioning took 12.6 minutes #-------------------------------------------- #@# Surf Volume lh za mrt 23 04:19:06 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_calc -o lh.area.mid lh.area add lh.area.pial Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o lh.area.mid lh.area.mid div 2 Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_convert --volume sub025 lh /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.volume masking with /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/lh.cortex.label Total face volume 212004 Total vertex volume 208706 (mask=0) #@# sub025 lh 208706 vertexvol Done #-------------------------------------------- #@# Surf Volume rh za mrt 23 04:19:10 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_calc -o rh.area.mid rh.area add rh.area.pial Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o rh.area.mid rh.area.mid div 2 Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_convert --volume sub025 rh /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.volume masking with /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/rh.cortex.label Total face volume 207812 Total vertex volume 204672 (mask=0) #@# sub025 rh 204672 vertexvol Done #-------------------------------------------- #@# Cortical ribbon mask za mrt 23 04:19:13 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri mris_volmask --aseg_name aseg.presurf --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon sub025 SUBJECTS_DIR is /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer loading input data... computing distance to left white surface computing distance to left pial surface computing distance to right white surface computing distance to right pial surface hemi masks overlap voxels = 40 writing volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/ribbon.mgz mris_volmask took 12.87 minutes writing ribbon files #----------------------------------------- #@# Parcellation Stats lh za mrt 23 04:32:05 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab sub025 lh white computing statistics for each annotation in ../label/lh.aparc.annot. reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/wm.mgz... reading input surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white... reading input pial surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.pial... reading input white surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 212004 Total vertex volume 208706 (mask=0) reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1729060 mm^3 (det: 1.126685 ) lhCtxGM: 208866.020 208522.000 diff= 344.0 pctdiff= 0.165 rhCtxGM: 204194.162 204014.000 diff= 180.2 pctdiff= 0.088 lhCtxWM: 198861.260 199196.500 diff= -335.2 pctdiff=-0.169 rhCtxWM: 203593.850 204731.500 diff=-1137.6 pctdiff=-0.559 SubCortGMVol 50656.000 SupraTentVol 939260.292 (938685.000) diff=575.292 pctdiff=0.061 SupraTentVolNotVent 867721.292 (867146.000) diff=575.292 pctdiff=0.066 BrainSegVol 1071577.000 (1066149.000) diff=5428.000 pctdiff=0.507 BrainSegVolNotVent 992601.000 (991424.292) diff=1176.708 pctdiff=0.119 BrainSegVolNotVent 992601.000 CerebellumVol 125227.000 VentChorVol 71539.000 3rd4th5thCSF 7437.000 CSFVol 2009.000, OptChiasmVol 228.000 MaskVol 1660918.000 1225 823 1831 2.418 0.574 0.092 0.021 6 1.1 bankssts 745 439 1690 3.537 0.838 0.121 0.026 8 0.9 caudalanteriorcingulate 4293 2492 6267 2.441 0.517 0.122 0.046 57 8.3 caudalmiddlefrontal 2581 1566 2990 1.834 0.479 0.138 0.042 36 4.4 cuneus 481 312 1977 3.964 0.878 0.135 0.045 6 0.9 entorhinal 3583 2378 8633 2.842 0.785 0.136 0.055 62 8.1 fusiform 6171 3477 8990 2.390 0.626 0.111 0.038 75 9.7 inferiorparietal 4148 2680 8904 2.590 0.841 0.139 0.057 88 10.5 inferiortemporal 1462 901 2552 2.839 0.973 0.117 0.034 17 2.0 isthmuscingulate 7684 4483 12241 2.337 0.699 0.123 0.042 99 13.0 lateraloccipital 3791 2445 6822 2.564 0.738 0.136 0.050 56 7.5 lateralorbitofrontal 4663 2970 7079 2.121 0.678 0.130 0.038 60 7.7 lingual 2724 1757 5664 2.730 0.942 0.140 0.060 53 6.5 medialorbitofrontal 3850 2402 7365 2.399 0.710 0.128 0.056 60 8.6 middletemporal 929 570 2138 2.884 0.987 0.096 0.026 6 1.0 parahippocampal 2390 1390 3632 2.557 0.664 0.112 0.036 22 4.0 paracentral 2058 1233 3429 2.495 0.556 0.109 0.035 22 2.8 parsopercularis 950 577 1465 2.234 0.588 0.142 0.049 15 1.6 parsorbitalis 1740 993 2462 2.212 0.495 0.125 0.049 24 3.8 parstriangularis 1719 1222 1828 1.660 0.410 0.133 0.034 15 2.8 pericalcarine 7202 4354 9183 1.978 0.669 0.113 0.038 72 11.7 postcentral 1335 864 2638 2.623 0.773 0.123 0.033 18 1.6 posteriorcingulate 8586 5233 13248 2.495 0.632 0.121 0.041 97 15.8 precentral 5659 3582 8177 2.143 0.649 0.117 0.044 71 10.4 precuneus 1001 623 2409 3.035 1.030 0.106 0.027 12 1.0 rostralanteriorcingulate 9684 5729 14050 2.290 0.548 0.127 0.047 134 17.7 rostralmiddlefrontal 10126 6066 17765 2.628 0.603 0.123 0.050 148 21.1 superiorfrontal 8746 5043 11755 2.202 0.571 0.111 0.036 102 13.5 superiorparietal 6386 3792 11108 2.487 0.678 0.111 0.041 81 11.4 superiortemporal 5826 3501 8649 2.312 0.631 0.125 0.050 85 12.6 supramarginal 391 206 741 2.542 0.413 0.156 0.063 11 1.0 frontalpole 544 341 2698 4.245 0.806 0.171 0.091 17 1.9 temporalpole 761 431 1010 2.416 0.591 0.108 0.035 8 1.1 transversetemporal 3395 2264 7269 3.078 0.878 0.126 0.053 39 7.9 insula mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.pial.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab sub025 lh pial computing statistics for each annotation in ../label/lh.aparc.annot. reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/wm.mgz... reading input surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.pial... reading input pial surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.pial... reading input white surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 212004 Total vertex volume 208706 (mask=0) reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1729060 mm^3 (det: 1.126685 ) lhCtxGM: 208866.020 208522.000 diff= 344.0 pctdiff= 0.165 rhCtxGM: 204194.162 204014.000 diff= 180.2 pctdiff= 0.088 lhCtxWM: 198861.260 199196.500 diff= -335.2 pctdiff=-0.169 rhCtxWM: 203593.850 204731.500 diff=-1137.6 pctdiff=-0.559 SubCortGMVol 50656.000 SupraTentVol 939260.292 (938685.000) diff=575.292 pctdiff=0.061 SupraTentVolNotVent 867721.292 (867146.000) diff=575.292 pctdiff=0.066 BrainSegVol 1071577.000 (1066149.000) diff=5428.000 pctdiff=0.507 BrainSegVolNotVent 992601.000 (991424.292) diff=1176.708 pctdiff=0.119 BrainSegVolNotVent 992601.000 CerebellumVol 125227.000 VentChorVol 71539.000 3rd4th5thCSF 7437.000 CSFVol 2009.000, OptChiasmVol 228.000 MaskVol 1660918.000 1225 693 1831 2.418 0.574 0.089 0.018 8 0.9 bankssts 745 627 1690 3.537 0.838 0.120 0.021 5 0.7 caudalanteriorcingulate 4293 2586 6267 2.441 0.517 0.098 0.024 36 3.7 caudalmiddlefrontal 2581 1760 2990 1.834 0.479 0.119 0.027 30 3.2 cuneus 481 676 1977 3.964 0.878 0.190 0.041 6 0.9 entorhinal 3583 3288 8633 2.842 0.785 0.166 0.041 58 6.9 fusiform 6171 4065 8990 2.390 0.626 0.104 0.023 46 6.0 inferiorparietal 4148 3771 8904 2.590 0.841 0.159 0.039 78 7.2 inferiortemporal 1462 997 2552 2.839 0.973 0.136 0.041 40 2.1 isthmuscingulate 7684 5735 12241 2.337 0.699 0.122 0.028 80 9.5 lateraloccipital 3791 2789 6822 2.564 0.738 0.132 0.034 58 5.0 lateralorbitofrontal 4663 3825 7079 2.121 0.678 0.134 0.031 56 6.6 lingual 2724 2320 5664 2.730 0.942 0.161 0.056 45 8.0 medialorbitofrontal 3850 3182 7365 2.399 0.710 0.123 0.028 40 4.5 middletemporal 929 887 2138 2.884 0.987 0.140 0.031 8 1.4 parahippocampal 2390 1570 3632 2.557 0.664 0.089 0.019 12 2.0 paracentral 2058 1445 3429 2.495 0.556 0.107 0.018 16 1.5 parsopercularis 950 695 1465 2.234 0.588 0.152 0.033 22 1.4 parsorbitalis 1740 1201 2462 2.212 0.495 0.125 0.028 20 2.3 parstriangularis 1719 1046 1828 1.660 0.410 0.104 0.023 15 1.6 pericalcarine 7202 5061 9183 1.978 0.669 0.100 0.019 42 5.7 postcentral 1335 1153 2638 2.623 0.773 0.164 0.040 26 2.5 posteriorcingulate 8586 5467 13248 2.495 0.632 0.090 0.021 83 7.1 precentral 5659 3935 8177 2.143 0.649 0.111 0.024 46 5.6 precuneus 1001 863 2409 3.035 1.030 0.145 0.028 13 1.2 rostralanteriorcingulate 9684 6313 14050 2.290 0.548 0.114 0.026 99 10.4 rostralmiddlefrontal 10126 7096 17765 2.628 0.603 0.112 0.025 121 10.6 superiorfrontal 8746 5736 11755 2.202 0.571 0.110 0.027 164 9.5 superiorparietal 6386 4607 11108 2.487 0.678 0.104 0.022 41 5.8 superiortemporal 5826 3835 8649 2.312 0.631 0.110 0.028 70 7.2 supramarginal 391 353 741 2.542 0.413 0.157 0.026 3 0.5 frontalpole 544 854 2698 4.245 0.806 0.258 0.064 9 1.6 temporalpole 761 443 1010 2.416 0.591 0.091 0.017 6 0.5 transversetemporal 3395 2297 7269 3.078 0.878 0.148 0.043 61 6.8 insula #----------------------------------------- #@# Parcellation Stats rh za mrt 23 04:33:15 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab sub025 rh white computing statistics for each annotation in ../label/rh.aparc.annot. reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/wm.mgz... reading input surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white... reading input pial surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.pial... reading input white surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 207812 Total vertex volume 204672 (mask=0) reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1729060 mm^3 (det: 1.126685 ) lhCtxGM: 208866.020 208522.000 diff= 344.0 pctdiff= 0.165 rhCtxGM: 204194.162 204014.000 diff= 180.2 pctdiff= 0.088 lhCtxWM: 198861.260 199196.500 diff= -335.2 pctdiff=-0.169 rhCtxWM: 203593.850 204731.500 diff=-1137.6 pctdiff=-0.559 SubCortGMVol 50656.000 SupraTentVol 939260.292 (938685.000) diff=575.292 pctdiff=0.061 SupraTentVolNotVent 867721.292 (867146.000) diff=575.292 pctdiff=0.066 BrainSegVol 1071577.000 (1066149.000) diff=5428.000 pctdiff=0.507 BrainSegVolNotVent 992601.000 (991424.292) diff=1176.708 pctdiff=0.119 BrainSegVolNotVent 992601.000 CerebellumVol 125227.000 VentChorVol 71539.000 3rd4th5thCSF 7437.000 CSFVol 2009.000, OptChiasmVol 228.000 MaskVol 1660918.000 990 673 1579 2.591 0.500 0.073 0.012 2 0.5 bankssts 920 573 1963 2.943 0.899 0.134 0.026 13 0.9 caudalanteriorcingulate 4629 2700 6320 2.339 0.508 0.118 0.040 52 8.6 caudalmiddlefrontal 2671 1612 3155 1.913 0.501 0.141 0.044 40 5.1 cuneus 505 337 1704 3.343 0.832 0.117 0.030 5 0.7 entorhinal 3630 2355 7968 2.663 0.889 0.132 0.052 49 7.5 fusiform 6658 3735 9803 2.393 0.708 0.120 0.054 110 15.5 inferiorparietal 4061 2623 9601 2.764 0.868 0.142 0.065 83 11.3 inferiortemporal 1350 763 2130 2.625 0.798 0.118 0.037 19 1.8 isthmuscingulate 9212 5515 14554 2.320 0.698 0.137 0.050 125 20.1 lateraloccipital 3308 2208 6621 2.786 0.781 0.142 0.049 49 6.8 lateralorbitofrontal 4511 2795 6019 2.008 0.591 0.136 0.045 61 8.6 lingual 2938 1868 4529 2.195 0.604 0.132 0.053 53 6.3 medialorbitofrontal 4380 2819 8201 2.497 0.658 0.120 0.051 66 8.8 middletemporal 881 570 1894 2.668 1.045 0.090 0.023 6 0.7 parahippocampal 2415 1474 3382 2.289 0.582 0.108 0.036 23 4.0 paracentral 1711 1059 2808 2.572 0.527 0.119 0.060 49 4.7 parsopercularis 1130 642 2238 2.833 0.683 0.142 0.070 28 3.4 parsorbitalis 1831 1070 2860 2.336 0.539 0.114 0.048 28 3.6 parstriangularis 1991 1402 1968 1.578 0.348 0.135 0.034 20 3.2 pericalcarine 6419 4045 7222 1.763 0.640 0.123 0.034 68 9.8 postcentral 1597 1017 3132 2.740 0.830 0.131 0.039 28 2.7 posteriorcingulate 9007 5593 13316 2.354 0.615 0.119 0.038 81 15.8 precentral 5875 3562 8679 2.216 0.631 0.115 0.042 75 10.2 precuneus 833 484 2277 3.392 0.906 0.120 0.053 11 2.1 rostralanteriorcingulate 9678 5657 12726 2.142 0.527 0.134 0.051 153 20.3 rostralmiddlefrontal 10680 6294 17516 2.560 0.611 0.124 0.052 190 24.1 superiorfrontal 9211 5430 11428 2.033 0.531 0.115 0.038 107 14.4 superiorparietal 5780 3442 9739 2.499 0.658 0.109 0.038 64 9.3 superiortemporal 5780 3356 8242 2.377 0.608 0.121 0.048 80 11.2 supramarginal 451 247 707 2.247 0.556 0.153 0.065 10 1.1 frontalpole 583 365 2490 3.752 0.916 0.150 0.073 12 1.6 temporalpole 605 345 754 2.109 0.560 0.119 0.029 7 0.7 transversetemporal 3485 2339 7132 3.038 0.940 0.116 0.047 39 7.7 insula mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.pial.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab sub025 rh pial computing statistics for each annotation in ../label/rh.aparc.annot. reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/wm.mgz... reading input surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.pial... reading input pial surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.pial... reading input white surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 207812 Total vertex volume 204672 (mask=0) reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1729060 mm^3 (det: 1.126685 ) lhCtxGM: 208866.020 208522.000 diff= 344.0 pctdiff= 0.165 rhCtxGM: 204194.162 204014.000 diff= 180.2 pctdiff= 0.088 lhCtxWM: 198861.260 199196.500 diff= -335.2 pctdiff=-0.169 rhCtxWM: 203593.850 204731.500 diff=-1137.6 pctdiff=-0.559 SubCortGMVol 50656.000 SupraTentVol 939260.292 (938685.000) diff=575.292 pctdiff=0.061 SupraTentVolNotVent 867721.292 (867146.000) diff=575.292 pctdiff=0.066 BrainSegVol 1071577.000 (1066149.000) diff=5428.000 pctdiff=0.507 BrainSegVolNotVent 992601.000 (991424.292) diff=1176.708 pctdiff=0.119 BrainSegVolNotVent 992601.000 CerebellumVol 125227.000 VentChorVol 71539.000 3rd4th5thCSF 7437.000 CSFVol 2009.000, OptChiasmVol 228.000 MaskVol 1660918.000 990 537 1579 2.591 0.500 0.074 0.014 6 0.5 bankssts 920 732 1963 2.943 0.899 0.132 0.026 16 1.0 caudalanteriorcingulate 4629 2824 6320 2.339 0.508 0.094 0.021 36 4.1 caudalmiddlefrontal 2671 1774 3155 1.913 0.501 0.114 0.027 42 3.1 cuneus 505 690 1704 3.343 0.832 0.201 0.043 5 1.1 entorhinal 3630 3095 7968 2.663 0.889 0.150 0.038 51 6.2 fusiform 6658 4368 9803 2.393 0.708 0.103 0.027 77 7.3 inferiorparietal 4061 3783 9601 2.764 0.868 0.153 0.039 60 6.8 inferiortemporal 1350 892 2130 2.625 0.798 0.147 0.043 50 2.3 isthmuscingulate 9212 6928 14554 2.320 0.698 0.122 0.030 106 12.0 lateraloccipital 3308 2527 6621 2.786 0.781 0.144 0.039 54 5.5 lateralorbitofrontal 4511 3265 6019 2.008 0.591 0.121 0.031 59 6.0 lingual 2938 2192 4529 2.195 0.604 0.129 0.037 55 4.1 medialorbitofrontal 4380 3572 8201 2.497 0.658 0.124 0.030 67 6.3 middletemporal 881 829 1894 2.668 1.045 0.141 0.030 7 1.2 parahippocampal 2415 1542 3382 2.289 0.582 0.083 0.015 17 1.4 paracentral 1711 1105 2808 2.572 0.527 0.104 0.022 14 1.7 parsopercularis 1130 889 2238 2.833 0.683 0.149 0.045 26 2.1 parsorbitalis 1831 1326 2860 2.336 0.539 0.113 0.022 13 1.7 parstriangularis 1991 1199 1968 1.578 0.348 0.098 0.022 17 1.7 pericalcarine 6419 4349 7222 1.763 0.640 0.096 0.018 42 4.8 postcentral 1597 1243 3132 2.740 0.830 0.145 0.041 55 2.8 posteriorcingulate 9007 5871 13316 2.354 0.615 0.087 0.017 54 6.5 precentral 5875 4069 8679 2.216 0.631 0.111 0.023 54 5.5 precuneus 833 790 2277 3.392 0.906 0.158 0.032 9 1.3 rostralanteriorcingulate 9678 6210 12726 2.142 0.527 0.122 0.032 114 13.2 rostralmiddlefrontal 10680 7044 17516 2.560 0.611 0.108 0.026 105 11.4 superiorfrontal 9211 5987 11428 2.033 0.531 0.106 0.022 74 8.4 superiorparietal 5780 4205 9739 2.499 0.658 0.116 0.060 1622 6.6 superiortemporal 5780 3455 8242 2.377 0.608 0.100 0.025 50 6.5 supramarginal 451 350 707 2.247 0.556 0.154 0.064 33 0.7 frontalpole 583 919 2490 3.752 0.916 0.237 0.051 9 1.5 temporalpole 605 377 754 2.109 0.560 0.099 0.017 4 0.4 transversetemporal 3485 2207 7132 3.038 0.940 0.132 0.059 90 10.7 insula #----------------------------------------- #@# Cortical Parc 2 lh za mrt 23 04:34:26 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub025 lh ../surf/lh.sphere.reg /opt/freesurfer/6.0/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading atlas from /opt/freesurfer/6.0/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 2.9 using min determinant for regularization = 0.086 0 singular and 762 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 196 labels changed using aseg relabeling using gibbs priors... 000: 8629 changed, 135752 examined... 001: 1963 changed, 33506 examined... 002: 568 changed, 10358 examined... 003: 236 changed, 3259 examined... 004: 94 changed, 1381 examined... 005: 45 changed, 550 examined... 006: 21 changed, 250 examined... 007: 12 changed, 118 examined... 008: 2 changed, 67 examined... 009: 2 changed, 11 examined... 010: 2 changed, 11 examined... 011: 1 changed, 13 examined... 012: 3 changed, 6 examined... 013: 1 changed, 11 examined... 014: 0 changed, 5 examined... 88 labels changed using aseg 000: 289 total segments, 200 labels (2378 vertices) changed 001: 99 total segments, 12 labels (191 vertices) changed 002: 87 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 20 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... 1322 vertices marked for relabeling... 1322 labels changed in reclassification. writing output to ../label/lh.aparc.a2009s.annot... classification took 0 minutes and 17 seconds. #----------------------------------------- #@# Cortical Parc 2 rh za mrt 23 04:34:43 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub025 rh ../surf/rh.sphere.reg /opt/freesurfer/6.0/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading atlas from /opt/freesurfer/6.0/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 1.4 using min determinant for regularization = 0.020 0 singular and 719 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 20 labels changed using aseg relabeling using gibbs priors... 000: 8813 changed, 138125 examined... 001: 2031 changed, 34754 examined... 002: 579 changed, 10697 examined... 003: 242 changed, 3339 examined... 004: 114 changed, 1404 examined... 005: 55 changed, 641 examined... 006: 35 changed, 316 examined... 007: 16 changed, 201 examined... 008: 7 changed, 86 examined... 009: 5 changed, 43 examined... 010: 0 changed, 23 examined... 10 labels changed using aseg 000: 283 total segments, 196 labels (2803 vertices) changed 001: 92 total segments, 7 labels (11 vertices) changed 002: 85 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 55 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... 1084 vertices marked for relabeling... 1084 labels changed in reclassification. writing output to ../label/rh.aparc.a2009s.annot... classification took 0 minutes and 18 seconds. #----------------------------------------- #@# Parcellation Stats 2 lh za mrt 23 04:35:01 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.a2009s.stats -b -a ../label/lh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab sub025 lh white computing statistics for each annotation in ../label/lh.aparc.a2009s.annot. reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/wm.mgz... reading input surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white... reading input pial surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.pial... reading input white surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 212004 Total vertex volume 208706 (mask=0) reading colortable from annotation file... colortable with 76 entries read (originally Simple_surface_labels2008.txt) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1729060 mm^3 (det: 1.126685 ) lhCtxGM: 208866.020 208522.000 diff= 344.0 pctdiff= 0.165 rhCtxGM: 204194.162 204014.000 diff= 180.2 pctdiff= 0.088 lhCtxWM: 198861.260 199196.500 diff= -335.2 pctdiff=-0.169 rhCtxWM: 203593.850 204731.500 diff=-1137.6 pctdiff=-0.559 SubCortGMVol 50656.000 SupraTentVol 939260.292 (938685.000) diff=575.292 pctdiff=0.061 SupraTentVolNotVent 867721.292 (867146.000) diff=575.292 pctdiff=0.066 BrainSegVol 1071577.000 (1066149.000) diff=5428.000 pctdiff=0.507 BrainSegVolNotVent 992601.000 (991424.292) diff=1176.708 pctdiff=0.119 BrainSegVolNotVent 992601.000 CerebellumVol 125227.000 VentChorVol 71539.000 3rd4th5thCSF 7437.000 CSFVol 2009.000, OptChiasmVol 228.000 MaskVol 1660918.000 1178 733 1903 2.453 0.576 0.139 0.042 18 1.8 G&S_frontomargin 1662 962 3876 2.848 0.882 0.124 0.050 31 3.0 G&S_occipital_inf 1776 1024 2550 2.325 0.704 0.135 0.045 20 3.8 G&S_paracentral 1652 930 3125 2.774 0.745 0.122 0.060 26 4.1 G&S_subcentral 735 388 1146 2.363 0.550 0.136 0.059 13 1.7 G&S_transv_frontopol 1766 1181 4179 3.031 0.775 0.115 0.028 19 1.9 G&S_cingul-Ant 897 587 1844 2.882 0.806 0.109 0.025 6 0.9 G&S_cingul-Mid-Ant 1070 719 2055 2.568 0.690 0.099 0.022 6 0.9 G&S_cingul-Mid-Post 454 299 1069 2.880 0.694 0.146 0.046 8 0.7 G_cingul-Post-dorsal 377 219 737 2.994 0.867 0.133 0.045 6 0.8 G_cingul-Post-ventral 2022 1216 2484 1.820 0.449 0.144 0.047 30 3.9 G_cuneus 1263 705 2484 2.701 0.491 0.120 0.044 20 2.1 G_front_inf-Opercular 567 297 995 2.374 0.543 0.134 0.049 9 1.1 G_front_inf-Orbital 908 462 1380 2.302 0.462 0.116 0.064 14 2.4 G_front_inf-Triangul 6090 3206 9386 2.405 0.572 0.129 0.058 109 14.2 G_front_middle 8085 4508 14648 2.697 0.616 0.131 0.060 144 20.2 G_front_sup 555 363 1544 3.444 0.843 0.140 0.068 9 1.4 G_Ins_lg&S_cent_ins 641 414 1959 3.365 0.821 0.148 0.069 9 2.2 G_insular_short 2207 1124 3644 2.448 0.688 0.127 0.050 37 4.1 G_occipital_middle 1621 899 2582 2.416 0.691 0.128 0.044 22 3.0 G_occipital_sup 1406 854 4070 3.044 0.778 0.153 0.081 38 4.6 G_oc-temp_lat-fusifor 3419 2057 5262 2.148 0.678 0.136 0.043 51 6.6 G_oc-temp_med-Lingual 1303 815 3920 3.319 0.978 0.122 0.041 14 2.2 G_oc-temp_med-Parahip 2375 1426 4733 2.522 0.836 0.139 0.057 44 5.0 G_orbital 2777 1370 4033 2.392 0.628 0.123 0.053 49 6.0 G_pariet_inf-Angular 2931 1606 5051 2.517 0.641 0.137 0.072 66 9.3 G_pariet_inf-Supramar 3646 1857 4898 2.203 0.552 0.113 0.045 58 7.2 G_parietal_sup 2872 1537 3425 1.943 0.575 0.122 0.041 34 5.3 G_postcentral 3363 1736 5277 2.535 0.630 0.121 0.049 48 7.5 G_precentral 2972 1699 4541 2.157 0.668 0.127 0.061 55 7.6 G_precuneus 1025 630 2600 2.795 0.661 0.162 0.079 30 3.4 G_rectus 921 560 1421 2.539 1.115 0.129 0.068 19 2.3 G_subcallosal 561 277 720 2.326 0.440 0.097 0.036 6 0.8 G_temp_sup-G_T_transv 2153 1210 4885 2.646 0.801 0.143 0.070 46 6.7 G_temp_sup-Lateral 396 249 1303 3.234 0.975 0.115 0.071 6 1.1 G_temp_sup-Plan_polar 1395 738 1920 2.374 0.627 0.113 0.035 19 2.1 G_temp_sup-Plan_tempo 2463 1455 5680 2.636 0.861 0.152 0.076 72 8.3 G_temporal_inf 2120 1168 4150 2.429 0.714 0.139 0.079 46 6.5 G_temporal_middle 183 131 221 1.977 0.507 0.159 0.033 2 0.3 Lat_Fis-ant-Horizont 230 166 306 2.135 0.362 0.108 0.024 1 0.2 Lat_Fis-ant-Vertical 1194 774 1683 2.573 0.577 0.105 0.026 7 1.4 Lat_Fis-post 2016 1137 3026 2.211 0.596 0.131 0.044 25 3.9 Pole_occipital 1240 823 5101 3.605 1.019 0.161 0.074 30 3.8 Pole_temporal 2202 1598 2562 1.770 0.630 0.123 0.029 17 2.9 S_calcarine 3318 2445 4266 1.963 0.717 0.114 0.027 19 4.1 S_central 1105 796 1445 1.974 0.529 0.086 0.015 3 0.8 S_cingul-Marginalis 468 330 772 2.857 0.472 0.113 0.037 3 0.7 S_circular_insula_ant 1571 1074 2458 2.595 0.983 0.079 0.018 8 1.3 S_circular_insula_inf 1547 1058 2387 2.682 0.575 0.115 0.035 10 2.4 S_circular_insula_sup 815 563 2074 3.198 0.782 0.135 0.041 14 1.4 S_collat_transv_ant 597 436 788 2.055 0.442 0.122 0.024 3 0.7 S_collat_transv_post 2355 1523 3000 2.145 0.536 0.116 0.031 20 3.0 S_front_inf 1753 1070 2207 2.189 0.461 0.128 0.042 21 3.1 S_front_middle 2643 1748 3885 2.423 0.492 0.105 0.027 16 3.0 S_front_sup 444 299 484 2.125 0.436 0.143 0.035 4 0.7 S_interm_prim-Jensen 3189 2037 4263 2.325 0.512 0.108 0.026 23 3.7 S_intrapariet&P_trans 1233 840 1466 2.072 0.407 0.105 0.023 6 1.3 S_oc_middle&Lunatus 1125 728 1335 2.123 0.418 0.117 0.026 9 1.1 S_oc_sup&transversal 390 270 470 1.909 0.389 0.098 0.023 2 0.4 S_occipital_ant 819 577 1264 2.503 0.542 0.100 0.021 3 0.7 S_oc-temp_lat 1679 1204 2751 2.384 0.667 0.115 0.024 12 1.7 S_oc-temp_med&Lingual 391 246 488 2.230 0.543 0.139 0.038 4 0.6 S_orbital_lateral 523 365 681 2.173 0.639 0.124 0.028 4 0.6 S_orbital_med-olfact 1500 990 2389 2.506 0.592 0.140 0.043 20 2.7 S_orbital-H_Shaped 2476 1619 3049 1.996 0.583 0.104 0.026 22 2.8 S_parieto_occipital 1039 601 1283 2.928 1.340 0.116 0.029 16 1.0 S_pericallosal 3270 2185 3943 1.914 0.406 0.100 0.025 22 3.2 S_postcentral 1830 1245 2506 2.318 0.381 0.098 0.024 9 1.7 S_precentral-inf-part 1855 1212 2619 2.517 0.573 0.123 0.040 21 3.1 S_precentral-sup-part 626 431 1153 2.793 0.918 0.124 0.030 5 0.8 S_suborbital 810 550 1256 2.456 0.552 0.127 0.036 7 1.1 S_subparietal 1246 905 1718 2.098 0.532 0.120 0.025 9 1.6 S_temporal_inf 5001 3346 7192 2.318 0.585 0.092 0.021 24 4.4 S_temporal_sup 538 352 738 2.405 0.725 0.104 0.023 2 0.6 S_temporal_transverse #----------------------------------------- #@# Parcellation Stats 2 rh za mrt 23 04:35:37 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.a2009s.stats -b -a ../label/rh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab sub025 rh white computing statistics for each annotation in ../label/rh.aparc.a2009s.annot. reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/wm.mgz... reading input surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white... reading input pial surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.pial... reading input white surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 207812 Total vertex volume 204672 (mask=0) reading colortable from annotation file... colortable with 76 entries read (originally Simple_surface_labels2008.txt) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1729060 mm^3 (det: 1.126685 ) lhCtxGM: 208866.020 208522.000 diff= 344.0 pctdiff= 0.165 rhCtxGM: 204194.162 204014.000 diff= 180.2 pctdiff= 0.088 lhCtxWM: 198861.260 199196.500 diff= -335.2 pctdiff=-0.169 rhCtxWM: 203593.850 204731.500 diff=-1137.6 pctdiff=-0.559 SubCortGMVol 50656.000 SupraTentVol 939260.292 (938685.000) diff=575.292 pctdiff=0.061 SupraTentVolNotVent 867721.292 (867146.000) diff=575.292 pctdiff=0.066 BrainSegVol 1071577.000 (1066149.000) diff=5428.000 pctdiff=0.507 BrainSegVolNotVent 992601.000 (991424.292) diff=1176.708 pctdiff=0.119 BrainSegVolNotVent 992601.000 CerebellumVol 125227.000 VentChorVol 71539.000 3rd4th5thCSF 7437.000 CSFVol 2009.000, OptChiasmVol 228.000 MaskVol 1660918.000 1100 698 1777 2.403 0.673 0.163 0.058 20 2.5 G&S_frontomargin 1823 1122 3740 2.617 0.829 0.149 0.067 29 5.2 G&S_occipital_inf 1470 896 1862 1.960 0.577 0.127 0.042 14 2.8 G&S_paracentral 1461 843 2571 2.734 0.553 0.135 0.049 23 2.8 G&S_subcentral 1334 714 1707 2.090 0.479 0.130 0.054 21 3.0 G&S_transv_frontopol 2550 1703 5323 2.755 0.775 0.119 0.049 53 5.9 G&S_cingul-Ant 1081 728 2222 2.953 0.666 0.126 0.028 10 1.3 G&S_cingul-Mid-Ant 1272 828 2657 2.863 0.752 0.109 0.031 14 1.5 G&S_cingul-Mid-Post 457 297 1033 2.524 0.631 0.165 0.060 11 1.2 G_cingul-Post-dorsal 351 195 784 3.050 0.566 0.121 0.054 5 0.6 G_cingul-Post-ventral 2521 1489 2889 1.859 0.479 0.143 0.044 39 4.9 G_cuneus 1355 731 2411 2.492 0.610 0.120 0.078 50 4.5 G_front_inf-Opercular 427 220 794 2.456 0.584 0.130 0.082 10 1.2 G_front_inf-Orbital 727 390 1128 2.321 0.444 0.127 0.059 16 1.8 G_front_inf-Triangul 5509 2745 7640 2.279 0.554 0.136 0.066 115 15.5 G_front_middle 7493 4036 12658 2.596 0.648 0.133 0.062 150 19.4 G_front_sup 581 381 1588 3.715 0.877 0.143 0.086 15 2.6 G_Ins_lg&S_cent_ins 507 330 1544 3.488 0.735 0.132 0.049 8 1.1 G_insular_short 2625 1387 4267 2.516 0.683 0.138 0.064 51 7.6 G_occipital_middle 1808 1054 2774 2.129 0.652 0.135 0.046 25 3.4 G_occipital_sup 1795 1053 3891 2.635 0.838 0.135 0.065 31 4.9 G_oc-temp_lat-fusifor 3048 1734 4385 2.135 0.619 0.135 0.049 49 6.3 G_oc-temp_med-Lingual 1046 660 3098 3.226 0.920 0.111 0.031 10 1.3 G_oc-temp_med-Parahip 2619 1601 5990 2.823 0.801 0.148 0.065 59 7.2 G_orbital 3032 1535 4917 2.586 0.770 0.129 0.065 61 7.8 G_pariet_inf-Angular 2741 1499 3847 2.291 0.564 0.128 0.055 44 6.8 G_pariet_inf-Supramar 3350 1776 4244 2.059 0.521 0.113 0.047 52 6.2 G_parietal_sup 2142 1221 2345 1.683 0.476 0.125 0.036 25 3.5 G_postcentral 3376 1855 5479 2.474 0.684 0.131 0.051 40 8.3 G_precentral 2793 1523 4642 2.313 0.658 0.129 0.062 53 7.0 G_precuneus 898 538 1590 2.113 0.597 0.144 0.069 19 2.2 G_rectus 433 307 745 2.323 0.931 0.111 0.064 9 1.5 G_subcallosal 443 210 556 2.191 0.570 0.120 0.039 8 0.6 G_temp_sup-G_T_transv 1937 1049 3898 2.601 0.647 0.130 0.056 32 4.8 G_temp_sup-Lateral 1111 695 2246 2.962 0.978 0.102 0.048 9 2.1 G_temp_sup-Plan_polar 1279 660 1691 2.487 0.577 0.124 0.053 22 2.8 G_temp_sup-Plan_tempo 2313 1405 5656 2.750 0.807 0.146 0.088 63 9.0 G_temporal_inf 2584 1596 5420 2.552 0.680 0.135 0.068 54 6.5 G_temporal_middle 254 162 463 2.769 0.606 0.103 0.024 2 0.2 Lat_Fis-ant-Horizont 192 144 272 2.223 0.424 0.080 0.015 1 0.1 Lat_Fis-ant-Vertical 1582 1048 2388 2.671 0.542 0.104 0.028 10 1.8 Lat_Fis-post 4177 2515 5941 2.126 0.618 0.139 0.045 52 8.3 Pole_occipital 1579 986 6136 3.309 0.919 0.154 0.074 38 4.6 Pole_temporal 2080 1444 2315 1.836 0.724 0.127 0.034 18 3.2 S_calcarine 3362 2497 3892 1.772 0.619 0.115 0.024 20 3.9 S_central 1380 936 1688 1.979 0.378 0.083 0.015 4 1.0 S_cingul-Marginalis 558 379 885 2.867 0.518 0.117 0.030 3 0.8 S_circular_insula_ant 1245 820 1694 2.346 0.802 0.072 0.012 3 0.7 S_circular_insula_inf 1207 839 1966 2.782 0.654 0.114 0.033 8 2.0 S_circular_insula_sup 809 548 2034 3.303 0.935 0.124 0.035 10 1.1 S_collat_transv_ant 349 242 441 2.263 0.620 0.154 0.041 3 0.7 S_collat_transv_post 1679 1126 1989 2.087 0.444 0.117 0.029 12 1.9 S_front_inf 2775 1797 3298 1.987 0.450 0.133 0.036 30 4.2 S_front_middle 2926 1925 4012 2.299 0.441 0.108 0.034 26 4.4 S_front_sup 398 271 489 2.190 0.386 0.104 0.022 2 0.3 S_interm_prim-Jensen 3562 2327 4218 2.089 0.511 0.103 0.023 19 3.6 S_intrapariet&P_trans 1109 774 1324 1.993 0.488 0.111 0.025 5 1.3 S_oc_middle&Lunatus 1217 793 1460 2.125 0.449 0.122 0.036 11 2.0 S_oc_sup&transversal 727 447 943 2.321 0.618 0.102 0.043 10 1.6 S_occipital_ant 859 583 1262 2.253 0.586 0.123 0.039 8 1.4 S_oc-temp_lat 1691 1251 2467 2.153 0.612 0.115 0.025 10 1.7 S_oc-temp_med&Lingual 302 207 391 2.122 0.570 0.110 0.026 2 0.3 S_orbital_lateral 727 504 996 2.180 0.791 0.127 0.031 7 0.9 S_orbital_med-olfact 1150 783 2229 3.021 0.704 0.141 0.045 13 2.4 S_orbital-H_Shaped 2377 1558 2932 1.982 0.582 0.096 0.023 15 2.3 S_parieto_occipital 1392 788 1426 2.524 0.982 0.126 0.026 23 1.3 S_pericallosal 2656 1771 2580 1.631 0.374 0.118 0.027 24 3.2 S_postcentral 2783 1726 3685 2.362 0.364 0.101 0.025 17 3.3 S_precentral-inf-part 1756 1134 2296 2.351 0.514 0.106 0.025 11 1.8 S_precentral-sup-part 509 316 668 2.426 0.571 0.136 0.033 7 0.6 S_suborbital 1087 701 1500 2.237 0.534 0.134 0.044 16 2.1 S_subparietal 1076 742 1320 2.214 0.513 0.126 0.028 10 1.3 S_temporal_inf 4384 2926 6578 2.411 0.606 0.095 0.025 28 4.6 S_temporal_sup 380 249 484 2.091 0.556 0.090 0.016 1 0.3 S_temporal_transverse #----------------------------------------- #@# Cortical Parc 3 lh za mrt 23 04:36:14 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub025 lh ../surf/lh.sphere.reg /opt/freesurfer/6.0/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.DKTatlas.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading atlas from /opt/freesurfer/6.0/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 1.4 using min determinant for regularization = 0.020 0 singular and 383 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 1495 labels changed using aseg relabeling using gibbs priors... 000: 1903 changed, 135752 examined... 001: 415 changed, 8774 examined... 002: 131 changed, 2425 examined... 003: 56 changed, 701 examined... 004: 29 changed, 333 examined... 005: 21 changed, 180 examined... 006: 14 changed, 115 examined... 007: 7 changed, 74 examined... 008: 9 changed, 44 examined... 009: 6 changed, 47 examined... 010: 5 changed, 42 examined... 011: 7 changed, 31 examined... 012: 6 changed, 38 examined... 013: 5 changed, 33 examined... 014: 4 changed, 28 examined... 015: 4 changed, 27 examined... 016: 2 changed, 22 examined... 017: 2 changed, 14 examined... 018: 3 changed, 12 examined... 019: 4 changed, 17 examined... 020: 2 changed, 18 examined... 021: 3 changed, 16 examined... 022: 2 changed, 22 examined... 023: 2 changed, 15 examined... 024: 3 changed, 17 examined... 025: 2 changed, 14 examined... 026: 2 changed, 13 examined... 027: 2 changed, 12 examined... 028: 5 changed, 14 examined... 029: 7 changed, 21 examined... 030: 2 changed, 23 examined... 031: 1 changed, 14 examined... 032: 0 changed, 5 examined... 372 labels changed using aseg 000: 59 total segments, 26 labels (368 vertices) changed 001: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 2 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 796 vertices marked for relabeling... 796 labels changed in reclassification. writing output to ../label/lh.aparc.DKTatlas.annot... classification took 0 minutes and 14 seconds. #----------------------------------------- #@# Cortical Parc 3 rh za mrt 23 04:36:28 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub025 rh ../surf/rh.sphere.reg /opt/freesurfer/6.0/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.DKTatlas.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading atlas from /opt/freesurfer/6.0/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.9 using min determinant for regularization = 0.009 0 singular and 325 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 1260 labels changed using aseg relabeling using gibbs priors... 000: 2050 changed, 138125 examined... 001: 492 changed, 9401 examined... 002: 150 changed, 2776 examined... 003: 81 changed, 865 examined... 004: 44 changed, 438 examined... 005: 36 changed, 266 examined... 006: 25 changed, 199 examined... 007: 16 changed, 126 examined... 008: 8 changed, 89 examined... 009: 8 changed, 53 examined... 010: 5 changed, 43 examined... 011: 4 changed, 29 examined... 012: 1 changed, 20 examined... 013: 2 changed, 7 examined... 014: 3 changed, 12 examined... 015: 4 changed, 17 examined... 016: 1 changed, 26 examined... 017: 2 changed, 7 examined... 018: 2 changed, 7 examined... 019: 2 changed, 12 examined... 020: 1 changed, 9 examined... 021: 2 changed, 5 examined... 022: 1 changed, 10 examined... 023: 2 changed, 9 examined... 024: 1 changed, 12 examined... 025: 1 changed, 7 examined... 026: 1 changed, 7 examined... 027: 0 changed, 9 examined... 396 labels changed using aseg 000: 64 total segments, 31 labels (605 vertices) changed 001: 35 total segments, 2 labels (6 vertices) changed 002: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 10 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 583 vertices marked for relabeling... 583 labels changed in reclassification. writing output to ../label/rh.aparc.DKTatlas.annot... classification took 0 minutes and 14 seconds. #----------------------------------------- #@# Parcellation Stats 3 lh za mrt 23 04:36:42 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.DKTatlas.stats -b -a ../label/lh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab sub025 lh white computing statistics for each annotation in ../label/lh.aparc.DKTatlas.annot. reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/wm.mgz... reading input surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white... reading input pial surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.pial... reading input white surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 212004 Total vertex volume 208706 (mask=0) reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1729060 mm^3 (det: 1.126685 ) lhCtxGM: 208866.020 208522.000 diff= 344.0 pctdiff= 0.165 rhCtxGM: 204194.162 204014.000 diff= 180.2 pctdiff= 0.088 lhCtxWM: 198861.260 199196.500 diff= -335.2 pctdiff=-0.169 rhCtxWM: 203593.850 204731.500 diff=-1137.6 pctdiff=-0.559 SubCortGMVol 50656.000 SupraTentVol 939260.292 (938685.000) diff=575.292 pctdiff=0.061 SupraTentVolNotVent 867721.292 (867146.000) diff=575.292 pctdiff=0.066 BrainSegVol 1071577.000 (1066149.000) diff=5428.000 pctdiff=0.507 BrainSegVolNotVent 992601.000 (991424.292) diff=1176.708 pctdiff=0.119 BrainSegVolNotVent 992601.000 CerebellumVol 125227.000 VentChorVol 71539.000 3rd4th5thCSF 7437.000 CSFVol 2009.000, OptChiasmVol 228.000 MaskVol 1660918.000 1104 698 2175 3.136 0.931 0.120 0.026 11 1.2 caudalanteriorcingulate 4617 2691 6734 2.434 0.516 0.122 0.045 60 8.8 caudalmiddlefrontal 3262 2061 3972 1.864 0.517 0.132 0.038 40 5.3 cuneus 571 372 2152 3.720 0.905 0.141 0.050 8 1.3 entorhinal 3189 2113 7533 2.793 0.776 0.133 0.053 54 6.7 fusiform 6240 3540 9088 2.392 0.628 0.112 0.037 77 9.8 inferiorparietal 4263 2748 9746 2.699 0.883 0.145 0.062 97 11.9 inferiortemporal 1438 889 2502 2.847 0.978 0.118 0.034 17 2.0 isthmuscingulate 7760 4493 12338 2.351 0.707 0.123 0.042 101 13.2 lateraloccipital 4383 2797 8159 2.596 0.755 0.139 0.051 70 9.0 lateralorbitofrontal 4751 3018 7247 2.126 0.673 0.131 0.038 61 7.9 lingual 2186 1416 4559 2.707 0.890 0.144 0.064 47 5.5 medialorbitofrontal 4990 3149 9096 2.393 0.694 0.118 0.048 65 9.3 middletemporal 989 612 2242 2.858 1.000 0.097 0.026 6 1.0 parahippocampal 2755 1602 4286 2.581 0.663 0.113 0.036 26 4.5 paracentral 2002 1185 3362 2.545 0.540 0.111 0.037 22 2.8 parsopercularis 909 561 1400 2.307 0.529 0.136 0.041 12 1.4 parsorbitalis 2063 1230 2784 2.152 0.487 0.122 0.045 26 4.0 parstriangularis 1715 1223 1815 1.652 0.412 0.133 0.034 15 2.7 pericalcarine 8145 4916 10434 2.008 0.670 0.113 0.038 83 13.3 postcentral 1469 954 2789 2.556 0.757 0.118 0.031 17 1.6 posteriorcingulate 8353 5097 12938 2.504 0.630 0.121 0.042 95 15.5 precentral 5927 3607 8361 2.133 0.640 0.117 0.044 79 11.0 precuneus 1367 874 3288 3.001 1.072 0.111 0.030 17 1.5 rostralanteriorcingulate 7335 4273 10705 2.297 0.557 0.128 0.049 108 13.7 rostralmiddlefrontal 11608 6861 19718 2.572 0.603 0.124 0.051 172 24.8 superiorfrontal 6761 3927 9124 2.213 0.544 0.112 0.037 81 10.8 superiorparietal 7848 4748 14965 2.570 0.804 0.114 0.044 104 14.7 superiortemporal 5368 3233 8003 2.327 0.629 0.123 0.049 75 11.5 supramarginal 744 419 976 2.393 0.571 0.109 0.035 8 1.0 transversetemporal 2733 1849 6213 3.187 0.882 0.122 0.048 27 6.0 insula #----------------------------------------- #@# Parcellation Stats 3 rh za mrt 23 04:37:17 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.DKTatlas.stats -b -a ../label/rh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab sub025 rh white computing statistics for each annotation in ../label/rh.aparc.DKTatlas.annot. reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/wm.mgz... reading input surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white... reading input pial surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.pial... reading input white surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 207812 Total vertex volume 204672 (mask=0) reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1729060 mm^3 (det: 1.126685 ) lhCtxGM: 208866.020 208522.000 diff= 344.0 pctdiff= 0.165 rhCtxGM: 204194.162 204014.000 diff= 180.2 pctdiff= 0.088 lhCtxWM: 198861.260 199196.500 diff= -335.2 pctdiff=-0.169 rhCtxWM: 203593.850 204731.500 diff=-1137.6 pctdiff=-0.559 SubCortGMVol 50656.000 SupraTentVol 939260.292 (938685.000) diff=575.292 pctdiff=0.061 SupraTentVolNotVent 867721.292 (867146.000) diff=575.292 pctdiff=0.066 BrainSegVol 1071577.000 (1066149.000) diff=5428.000 pctdiff=0.507 BrainSegVolNotVent 992601.000 (991424.292) diff=1176.708 pctdiff=0.119 BrainSegVolNotVent 992601.000 CerebellumVol 125227.000 VentChorVol 71539.000 3rd4th5thCSF 7437.000 CSFVol 2009.000, OptChiasmVol 228.000 MaskVol 1660918.000 1016 632 2090 2.930 0.876 0.133 0.025 14 0.9 caudalanteriorcingulate 4774 2778 6483 2.338 0.505 0.122 0.043 58 9.6 caudalmiddlefrontal 3280 1998 3884 1.896 0.500 0.134 0.041 44 5.8 cuneus 462 310 1601 3.372 0.804 0.117 0.031 5 0.7 entorhinal 3268 2140 6558 2.568 0.851 0.130 0.050 41 6.5 fusiform 6640 3744 9799 2.404 0.706 0.120 0.053 109 15.1 inferiorparietal 4612 2938 11396 2.823 0.881 0.142 0.067 96 13.3 inferiortemporal 1356 772 2117 2.599 0.800 0.118 0.035 19 1.8 isthmuscingulate 9139 5475 14374 2.301 0.705 0.137 0.050 125 19.8 lateraloccipital 3962 2610 7944 2.808 0.799 0.147 0.055 61 9.1 lateralorbitofrontal 4454 2760 5928 2.009 0.588 0.134 0.042 58 8.0 lingual 2171 1392 3510 2.205 0.704 0.134 0.057 42 4.9 medialorbitofrontal 5117 3295 9417 2.519 0.649 0.117 0.048 72 9.4 middletemporal 931 598 1999 2.676 1.053 0.096 0.033 8 1.3 parahippocampal 2492 1518 3539 2.307 0.585 0.107 0.036 23 4.2 paracentral 1924 1175 3139 2.560 0.566 0.121 0.062 53 5.3 parsopercularis 973 558 1747 2.773 0.572 0.137 0.065 23 2.9 parsorbitalis 1814 1078 2774 2.295 0.535 0.115 0.048 28 3.3 parstriangularis 1946 1368 1924 1.573 0.345 0.136 0.034 20 3.1 pericalcarine 7184 4512 8052 1.771 0.631 0.124 0.035 79 11.3 postcentral 1614 1029 3172 2.749 0.836 0.133 0.040 29 2.8 posteriorcingulate 8850 5468 13167 2.360 0.614 0.117 0.037 78 15.5 precentral 6025 3603 8905 2.209 0.637 0.116 0.045 81 10.9 precuneus 1223 737 2874 3.071 0.945 0.120 0.067 41 4.4 rostralanteriorcingulate 7018 4028 9363 2.155 0.534 0.133 0.052 116 14.8 rostralmiddlefrontal 13913 8265 21466 2.433 0.616 0.125 0.050 210 28.7 superiorfrontal 7641 4510 9584 2.055 0.513 0.116 0.038 88 12.0 superiorparietal 7146 4336 13416 2.598 0.750 0.111 0.040 83 12.0 superiortemporal 5446 3166 7754 2.408 0.607 0.117 0.045 69 9.9 supramarginal 599 342 751 2.120 0.565 0.121 0.030 7 0.7 transversetemporal 2698 1826 5946 3.153 0.874 0.110 0.038 25 4.9 insula #----------------------------------------- #@# WM/GM Contrast lh za mrt 23 04:37:53 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts pctsurfcon --s sub025 --lh-only Log file is /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts/pctsurfcon.log za mrt 23 04:37:53 CET 2019 setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts /opt/freesurfer/6.0/bin/pctsurfcon $Id: pctsurfcon,v 1.15 2016/02/12 21:43:15 zkaufman Exp $ Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /opt/freesurfer/6.0 mri_vol2surf --mov /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --projdist -1 --o /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/tmp.pctsurfcon.145536/lh.wm.mgh --regheader sub025 --cortex srcvol = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/orig.mgz as target reference. -------- original matrix ----------- -0.98849 -0.04155 -0.14546 0.00000; -0.15100 0.32961 0.93196 0.00005; -0.00922 -0.94320 0.33209 0.00002; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/lh.cortex.label Reading surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 67819 Masking with /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/lh.cortex.label Writing to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/tmp.pctsurfcon.145536/lh.wm.mgh Dim: 135752 1 1 mri_vol2surf --mov /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --o /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/tmp.pctsurfcon.145536/lh.gm.mgh --projfrac 0.3 --regheader sub025 --cortex srcvol = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/orig.mgz as target reference. -------- original matrix ----------- -0.98849 -0.04155 -0.14546 0.00000; -0.15100 0.32961 0.93196 0.00005; -0.00922 -0.94320 0.33209 0.00002; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/lh.cortex.label Reading surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Done reading source surface Reading thickness /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.thickness Done Mapping Source Volume onto Source Subject Surface 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 82830 Masking with /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/lh.cortex.label Writing to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/tmp.pctsurfcon.145536/lh.gm.mgh Dim: 135752 1 1 mri_concat /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/tmp.pctsurfcon.145536/lh.wm.mgh /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/tmp.pctsurfcon.145536/lh.gm.mgh --paired-diff-norm --mul 100 --o /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.w-g.pct.mgh mri_segstats --in /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.w-g.pct.mgh --annot sub025 lh aparc --sum /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/stats/lh.w-g.pct.stats --snr $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ cwd cmdline mri_segstats --in /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.w-g.pct.mgh --annot sub025 lh aparc --sum /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/stats/lh.w-g.pct.stats --snr sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam UseRobust 0 Constructing seg from annotation Reading annotation /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Seg base 1000 Loading /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.w-g.pct.mgh Vertex Area is 0.61102 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation Reporting on 35 segmentations Using PrintSegStat mri_segstats done Cleaning up #----------------------------------------- #@# WM/GM Contrast rh za mrt 23 04:37:58 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts pctsurfcon --s sub025 --rh-only Log file is /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts/pctsurfcon.log za mrt 23 04:37:58 CET 2019 setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/scripts /opt/freesurfer/6.0/bin/pctsurfcon $Id: pctsurfcon,v 1.15 2016/02/12 21:43:15 zkaufman Exp $ Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /opt/freesurfer/6.0 mri_vol2surf --mov /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --projdist -1 --o /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/tmp.pctsurfcon.145590/rh.wm.mgh --regheader sub025 --cortex srcvol = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/orig.mgz as target reference. -------- original matrix ----------- -0.98849 -0.04155 -0.14546 0.00000; -0.15100 0.32961 0.93196 0.00005; -0.00922 -0.94320 0.33209 0.00002; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/rh.cortex.label Reading surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 69004 Masking with /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/rh.cortex.label Writing to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/tmp.pctsurfcon.145590/rh.wm.mgh Dim: 138125 1 1 mri_vol2surf --mov /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --o /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/tmp.pctsurfcon.145590/rh.gm.mgh --projfrac 0.3 --regheader sub025 --cortex srcvol = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/orig.mgz as target reference. -------- original matrix ----------- -0.98849 -0.04155 -0.14546 0.00000; -0.15100 0.32961 0.93196 0.00005; -0.00922 -0.94320 0.33209 0.00002; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/rh.cortex.label Reading surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Done reading source surface Reading thickness /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.thickness Done Mapping Source Volume onto Source Subject Surface 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 84204 Masking with /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/rh.cortex.label Writing to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/tmp.pctsurfcon.145590/rh.gm.mgh Dim: 138125 1 1 mri_concat /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/tmp.pctsurfcon.145590/rh.wm.mgh /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/tmp.pctsurfcon.145590/rh.gm.mgh --paired-diff-norm --mul 100 --o /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.w-g.pct.mgh mri_segstats --in /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.w-g.pct.mgh --annot sub025 rh aparc --sum /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/stats/rh.w-g.pct.stats --snr $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ cwd cmdline mri_segstats --in /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.w-g.pct.mgh --annot sub025 rh aparc --sum /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/stats/rh.w-g.pct.stats --snr sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam UseRobust 0 Constructing seg from annotation Reading annotation /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Seg base 2000 Loading /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.w-g.pct.mgh Vertex Area is 0.613069 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation Reporting on 35 segmentations Using PrintSegStat mri_segstats done Cleaning up #----------------------------------------- #@# Relabel Hypointensities za mrt 23 04:38:04 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri mri_relabel_hypointensities aseg.presurf.mgz ../surf aseg.presurf.hypos.mgz reading input surface ../surf/lh.white... relabeling lh hypointensities... 5695 voxels changed to hypointensity... reading input surface ../surf/rh.white... relabeling rh hypointensities... 6639 voxels changed to hypointensity... 11532 hypointense voxels neighboring cortex changed #----------------------------------------- #@# AParc-to-ASeg aparc za mrt 23 04:38:26 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025 mri_aparc2aseg --s sub025 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /opt/freesurfer/6.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt relabeling unlikely voxels interior to white matter surface: norm: mri/norm.mgz XFORM: mri/transforms/talairach.m3z GCA: /opt/freesurfer/6.0/average/RB_all_2016-05-10.vc700.gca label intensities: mri/aseg.auto_noCCseg.label_intensities.txt SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer subject sub025 outvol /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/aparc+aseg.mgz useribbon 0 baseoffset 0 RipUnknown 0 Reading lh white surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading lh pial surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.pial Loading lh annotations from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Reading rh white surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading rh pial surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.pial Loading rh annotations from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/ribbon.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/aseg.presurf.hypos.mgz ASeg Vox2RAS: ----------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; ------------------------- Labeling Slice relabeling unlikely voxels in interior of white matter setting orig areas to linear transform determinant scaled 7.29 reading 47 labels from mri/aseg.auto_noCCseg.label_intensities.txt rescaling Left_Cerebral_White_Matter from 107 --> 105 rescaling Left_Cerebral_Cortex from 61 --> 81 rescaling Left_Lateral_Ventricle from 13 --> 21 rescaling Left_Inf_Lat_Vent from 34 --> 33 rescaling Left_Cerebellum_White_Matter from 86 --> 88 rescaling Left_Cerebellum_Cortex from 60 --> 72 rescaling Left_Thalamus from 94 --> 104 rescaling Left_Thalamus_Proper from 84 --> 86 rescaling Left_Caudate from 75 --> 74 rescaling Left_Putamen from 80 --> 89 rescaling Left_Pallidum from 98 --> 95 rescaling Third_Ventricle from 25 --> 19 rescaling Fourth_Ventricle from 22 --> 16 rescaling Brain_Stem from 81 --> 85 rescaling Left_Hippocampus from 57 --> 69 rescaling Left_Amygdala from 56 --> 69 rescaling CSF from 32 --> 38 rescaling Left_Accumbens_area from 62 --> 68 rescaling Left_VentralDC from 87 --> 90 rescaling Right_Cerebral_White_Matter from 105 --> 104 rescaling Right_Cerebral_Cortex from 58 --> 82 rescaling Right_Lateral_Ventricle from 13 --> 17 rescaling Right_Inf_Lat_Vent from 25 --> 28 rescaling Right_Cerebellum_White_Matter from 87 --> 86 rescaling Right_Cerebellum_Cortex from 59 --> 70 rescaling Right_Thalamus_Proper from 85 --> 82 rescaling Right_Caudate from 62 --> 82 rescaling Right_Putamen from 80 --> 90 rescaling Right_Pallidum from 97 --> 94 rescaling Right_Hippocampus from 53 --> 67 rescaling Right_Amygdala from 55 --> 73 rescaling Right_Accumbens_area from 65 --> 82 rescaling Right_VentralDC from 86 --> 93 rescaling Fifth_Ventricle from 40 --> 34 rescaling WM_hypointensities from 78 --> 78 rescaling non_WM_hypointensities from 40 --> 44 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 410904 Used brute-force search on 0 voxels relabeling unlikely voxels in interior of white matter average std[0] = 7.3 pass 1: 224 changed. pass 2: 19 changed. pass 3: 0 changed. nchanged = 0 Writing output aseg to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/aparc+aseg.mgz #----------------------------------------- #@# AParc-to-ASeg a2009s za mrt 23 04:42:40 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025 mri_aparc2aseg --s sub025 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /opt/freesurfer/6.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --a2009s relabeling unlikely voxels interior to white matter surface: norm: mri/norm.mgz XFORM: mri/transforms/talairach.m3z GCA: /opt/freesurfer/6.0/average/RB_all_2016-05-10.vc700.gca label intensities: mri/aseg.auto_noCCseg.label_intensities.txt SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer subject sub025 outvol /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/aparc.a2009s+aseg.mgz useribbon 0 baseoffset 10100 RipUnknown 0 Reading lh white surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading lh pial surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.pial Loading lh annotations from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/lh.aparc.a2009s.annot reading colortable from annotation file... colortable with 76 entries read (originally Simple_surface_labels2008.txt) Reading rh white surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading rh pial surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.pial Loading rh annotations from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/rh.aparc.a2009s.annot reading colortable from annotation file... colortable with 76 entries read (originally Simple_surface_labels2008.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/ribbon.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/aseg.presurf.hypos.mgz ASeg Vox2RAS: ----------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; ------------------------- Labeling Slice relabeling unlikely voxels in interior of white matter setting orig areas to linear transform determinant scaled 7.29 reading 47 labels from mri/aseg.auto_noCCseg.label_intensities.txt rescaling Left_Cerebral_White_Matter from 107 --> 105 rescaling Left_Cerebral_Cortex from 61 --> 81 rescaling Left_Lateral_Ventricle from 13 --> 21 rescaling Left_Inf_Lat_Vent from 34 --> 33 rescaling Left_Cerebellum_White_Matter from 86 --> 88 rescaling Left_Cerebellum_Cortex from 60 --> 72 rescaling Left_Thalamus from 94 --> 104 rescaling Left_Thalamus_Proper from 84 --> 86 rescaling Left_Caudate from 75 --> 74 rescaling Left_Putamen from 80 --> 89 rescaling Left_Pallidum from 98 --> 95 rescaling Third_Ventricle from 25 --> 19 rescaling Fourth_Ventricle from 22 --> 16 rescaling Brain_Stem from 81 --> 85 rescaling Left_Hippocampus from 57 --> 69 rescaling Left_Amygdala from 56 --> 69 rescaling CSF from 32 --> 38 rescaling Left_Accumbens_area from 62 --> 68 rescaling Left_VentralDC from 87 --> 90 rescaling Right_Cerebral_White_Matter from 105 --> 104 rescaling Right_Cerebral_Cortex from 58 --> 82 rescaling Right_Lateral_Ventricle from 13 --> 17 rescaling Right_Inf_Lat_Vent from 25 --> 28 rescaling Right_Cerebellum_White_Matter from 87 --> 86 rescaling Right_Cerebellum_Cortex from 59 --> 70 rescaling Right_Thalamus_Proper from 85 --> 82 rescaling Right_Caudate from 62 --> 82 rescaling Right_Putamen from 80 --> 90 rescaling Right_Pallidum from 97 --> 94 rescaling Right_Hippocampus from 53 --> 67 rescaling Right_Amygdala from 55 --> 73 rescaling Right_Accumbens_area from 65 --> 82 rescaling Right_VentralDC from 86 --> 93 rescaling Fifth_Ventricle from 40 --> 34 rescaling WM_hypointensities from 78 --> 78 rescaling non_WM_hypointensities from 40 --> 44 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 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/opt/freesurfer/6.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --annot aparc.DKTatlas --o mri/aparc.DKTatlas+aseg.mgz relabeling unlikely voxels interior to white matter surface: norm: mri/norm.mgz XFORM: mri/transforms/talairach.m3z GCA: /opt/freesurfer/6.0/average/RB_all_2016-05-10.vc700.gca label intensities: mri/aseg.auto_noCCseg.label_intensities.txt SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer subject sub025 outvol mri/aparc.DKTatlas+aseg.mgz useribbon 0 baseoffset 0 RipUnknown 0 Reading lh white surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading lh pial surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.pial Loading lh annotations from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/lh.aparc.DKTatlas.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Reading rh white surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading rh pial surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.pial Loading rh annotations from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/rh.aparc.DKTatlas.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/ribbon.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/aseg.presurf.hypos.mgz ASeg Vox2RAS: ----------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; ------------------------- Labeling Slice relabeling unlikely voxels in interior of white matter setting orig areas to linear transform determinant scaled 7.29 reading 47 labels from mri/aseg.auto_noCCseg.label_intensities.txt rescaling Left_Cerebral_White_Matter from 107 --> 105 rescaling Left_Cerebral_Cortex from 61 --> 81 rescaling Left_Lateral_Ventricle from 13 --> 21 rescaling Left_Inf_Lat_Vent from 34 --> 33 rescaling Left_Cerebellum_White_Matter from 86 --> 88 rescaling Left_Cerebellum_Cortex from 60 --> 72 rescaling Left_Thalamus from 94 --> 104 rescaling Left_Thalamus_Proper from 84 --> 86 rescaling Left_Caudate from 75 --> 74 rescaling Left_Putamen from 80 --> 89 rescaling Left_Pallidum from 98 --> 95 rescaling Third_Ventricle from 25 --> 19 rescaling Fourth_Ventricle from 22 --> 16 rescaling Brain_Stem from 81 --> 85 rescaling Left_Hippocampus from 57 --> 69 rescaling Left_Amygdala from 56 --> 69 rescaling CSF from 32 --> 38 rescaling Left_Accumbens_area from 62 --> 68 rescaling Left_VentralDC from 87 --> 90 rescaling Right_Cerebral_White_Matter from 105 --> 104 rescaling Right_Cerebral_Cortex from 58 --> 82 rescaling Right_Lateral_Ventricle from 13 --> 17 rescaling Right_Inf_Lat_Vent from 25 --> 28 rescaling Right_Cerebellum_White_Matter from 87 --> 86 rescaling Right_Cerebellum_Cortex from 59 --> 70 rescaling Right_Thalamus_Proper from 85 --> 82 rescaling Right_Caudate from 62 --> 82 rescaling Right_Putamen from 80 --> 90 rescaling Right_Pallidum from 97 --> 94 rescaling Right_Hippocampus from 53 --> 67 rescaling Right_Amygdala from 55 --> 73 rescaling Right_Accumbens_area from 65 --> 82 rescaling Right_VentralDC from 86 --> 93 rescaling Fifth_Ventricle from 40 --> 34 rescaling WM_hypointensities from 78 --> 78 rescaling non_WM_hypointensities from 40 --> 44 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 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/project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri /opt/freesurfer/6.0/bin/apas2aseg --i aparc+aseg.mgz --o aseg.mgz freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c $Id: apas2aseg,v 1.2 2016/02/12 21:43:14 zkaufman Exp $ Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux mri_binarize --i aparc+aseg.mgz --o aseg.mgz --replace 1000 3 --replace 2000 42 --replace 1001 3 --replace 2001 42 --replace 1002 3 --replace 2002 42 --replace 1003 3 --replace 2003 42 --replace 1004 3 --replace 2004 42 --replace 1005 3 --replace 2005 42 --replace 1006 3 --replace 2006 42 --replace 1007 3 --replace 2007 42 --replace 1008 3 --replace 2008 42 --replace 1009 3 --replace 2009 42 --replace 1010 3 --replace 2010 42 --replace 1011 3 --replace 2011 42 --replace 1012 3 --replace 2012 42 --replace 1013 3 --replace 2013 42 --replace 1014 3 --replace 2014 42 --replace 1015 3 --replace 2015 42 --replace 1016 3 --replace 2016 42 --replace 1017 3 --replace 2017 42 --replace 1018 3 --replace 2018 42 --replace 1019 3 --replace 2019 42 --replace 1020 3 --replace 2020 42 --replace 1021 3 --replace 2021 42 --replace 1022 3 --replace 2022 42 --replace 1023 3 --replace 2023 42 --replace 1024 3 --replace 2024 42 --replace 1025 3 --replace 2025 42 --replace 1026 3 --replace 2026 42 --replace 1027 3 --replace 2027 42 --replace 1028 3 --replace 2028 42 --replace 1029 3 --replace 2029 42 --replace 1030 3 --replace 2030 42 --replace 1031 3 --replace 2031 42 --replace 1032 3 --replace 2032 42 --replace 1033 3 --replace 2033 42 --replace 1034 3 --replace 2034 42 --replace 1035 3 --replace 2035 42 $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri cmdline mri_binarize.bin --i aparc+aseg.mgz --o aseg.mgz --replace 1000 3 --replace 2000 42 --replace 1001 3 --replace 2001 42 --replace 1002 3 --replace 2002 42 --replace 1003 3 --replace 2003 42 --replace 1004 3 --replace 2004 42 --replace 1005 3 --replace 2005 42 --replace 1006 3 --replace 2006 42 --replace 1007 3 --replace 2007 42 --replace 1008 3 --replace 2008 42 --replace 1009 3 --replace 2009 42 --replace 1010 3 --replace 2010 42 --replace 1011 3 --replace 2011 42 --replace 1012 3 --replace 2012 42 --replace 1013 3 --replace 2013 42 --replace 1014 3 --replace 2014 42 --replace 1015 3 --replace 2015 42 --replace 1016 3 --replace 2016 42 --replace 1017 3 --replace 2017 42 --replace 1018 3 --replace 2018 42 --replace 1019 3 --replace 2019 42 --replace 1020 3 --replace 2020 42 --replace 1021 3 --replace 2021 42 --replace 1022 3 --replace 2022 42 --replace 1023 3 --replace 2023 42 --replace 1024 3 --replace 2024 42 --replace 1025 3 --replace 2025 42 --replace 1026 3 --replace 2026 42 --replace 1027 3 --replace 2027 42 --replace 1028 3 --replace 2028 42 --replace 1029 3 --replace 2029 42 --replace 1030 3 --replace 2030 42 --replace 1031 3 --replace 2031 42 --replace 1032 3 --replace 2032 42 --replace 1033 3 --replace 2033 42 --replace 1034 3 --replace 2034 42 --replace 1035 3 --replace 2035 42 sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam input aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output aseg.mgz Binarizing based on threshold min -infinity max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Replacing 72 1: 1000 3 2: 2000 42 3: 1001 3 4: 2001 42 5: 1002 3 6: 2002 42 7: 1003 3 8: 2003 42 9: 1004 3 10: 2004 42 11: 1005 3 12: 2005 42 13: 1006 3 14: 2006 42 15: 1007 3 16: 2007 42 17: 1008 3 18: 2008 42 19: 1009 3 20: 2009 42 21: 1010 3 22: 2010 42 23: 1011 3 24: 2011 42 25: 1012 3 26: 2012 42 27: 1013 3 28: 2013 42 29: 1014 3 30: 2014 42 31: 1015 3 32: 2015 42 33: 1016 3 34: 2016 42 35: 1017 3 36: 2017 42 37: 1018 3 38: 2018 42 39: 1019 3 40: 2019 42 41: 1020 3 42: 2020 42 43: 1021 3 44: 2021 42 45: 1022 3 46: 2022 42 47: 1023 3 48: 2023 42 49: 1024 3 50: 2024 42 51: 1025 3 52: 2025 42 53: 1026 3 54: 2026 42 55: 1027 3 56: 2027 42 57: 1028 3 58: 2028 42 59: 1029 3 60: 2029 42 61: 1030 3 62: 2030 42 63: 1031 3 64: 2031 42 65: 1032 3 66: 2032 42 67: 1033 3 68: 2033 42 69: 1034 3 70: 2034 42 71: 1035 3 72: 2035 42 Found 0 values in range Counting number of voxels in first frame Found 0 voxels in final mask Count: 0 0.000000 16777216 0.000000 mri_binarize done Started at za mrt 23 04:51:06 CET 2019 Ended at za mrt 23 04:51:13 CET 2019 Apas2aseg-Run-Time-Sec 7 apas2aseg Done #-------------------------------------------- #@# ASeg Stats za mrt 23 04:51:13 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025 mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/6.0/ASegStatsLUT.txt --subject sub025 $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ cwd cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/6.0/ASegStatsLUT.txt --subject sub025 sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam UseRobust 0 atlas_icv (eTIV) = 1729060 mm^3 (det: 1.126685 ) Computing euler number orig.nofix lheno = -206, rheno = -210 orig.nofix lhholes = 104, rhholes = 106 Loading mri/aseg.mgz Getting Brain Volume Statistics lhCtxGM: 208866.020 208522.000 diff= 344.0 pctdiff= 0.165 rhCtxGM: 204194.162 204014.000 diff= 180.2 pctdiff= 0.088 lhCtxWM: 198861.260 199196.500 diff= -335.2 pctdiff=-0.169 rhCtxWM: 203593.850 204731.500 diff=-1137.6 pctdiff=-0.559 SubCortGMVol 50656.000 SupraTentVol 939260.292 (938685.000) diff=575.292 pctdiff=0.061 SupraTentVolNotVent 867721.292 (867146.000) diff=575.292 pctdiff=0.066 BrainSegVol 1071577.000 (1066149.000) diff=5428.000 pctdiff=0.507 BrainSegVolNotVent 992601.000 (991424.292) diff=1176.708 pctdiff=0.119 BrainSegVolNotVent 992601.000 CerebellumVol 125227.000 VentChorVol 71539.000 3rd4th5thCSF 7437.000 CSFVol 2009.000, OptChiasmVol 228.000 MaskVol 1660918.000 Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 50 segmentations Computing statistics for each segmentation Reporting on 45 segmentations Using PrintSegStat mri_segstats done #----------------------------------------- #@# WMParc za mrt 23 04:55:21 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025 mri_aparc2aseg --s sub025 --labelwm --hypo-as-wm --rip-unknown --volmask --o mri/wmparc.mgz --ctxseg aparc+aseg.mgz SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer subject sub025 outvol mri/wmparc.mgz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 5.000000 RipUnknown 1 CtxSeg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/aparc+aseg.mgz Reading lh white surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading lh pial surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.pial Loading lh annotations from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Reading rh white surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading rh pial surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.pial Loading rh annotations from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/ribbon.mgz Loading filled from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/ribbon.mgz Ripping vertices labeled as unkown Ripped 8923 vertices from left hemi Ripped 8419 vertices from right hemi Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/aseg.mgz Loading Ctx Seg File /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/aparc+aseg.mgz ASeg Vox2RAS: ----------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 812508 Used brute-force search on 371 voxels Fixing Parahip LH WM Found 8 clusters 0 k 3.000000 1 k 1.000000 2 k 2.000000 3 k 2.000000 4 k 2.000000 5 k 15.000000 6 k 1025.000000 7 k 13.000000 Fixing Parahip RH WM Found 1 clusters 0 k 1225.000000 Writing output aseg to mri/wmparc.mgz mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub025 --surf-wm-vol --ctab /opt/freesurfer/6.0/WMParcStatsLUT.txt --etiv $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ cwd cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub025 --surf-wm-vol --ctab /opt/freesurfer/6.0/WMParcStatsLUT.txt --etiv sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam UseRobust 0 atlas_icv (eTIV) = 1729060 mm^3 (det: 1.126685 ) Loading mri/wmparc.mgz Getting Brain Volume Statistics lhCtxGM: 208866.020 208522.000 diff= 344.0 pctdiff= 0.165 rhCtxGM: 204194.162 204014.000 diff= 180.2 pctdiff= 0.088 lhCtxWM: 198861.260 199196.500 diff= -335.2 pctdiff=-0.169 rhCtxWM: 203593.850 204731.500 diff=-1137.6 pctdiff=-0.559 SubCortGMVol 50656.000 SupraTentVol 939260.292 (938685.000) diff=575.292 pctdiff=0.061 SupraTentVolNotVent 867721.292 (867146.000) diff=575.292 pctdiff=0.066 BrainSegVol 1071577.000 (1066149.000) diff=5428.000 pctdiff=0.507 BrainSegVolNotVent 992601.000 (991424.292) diff=1176.708 pctdiff=0.119 BrainSegVolNotVent 992601.000 CerebellumVol 125227.000 VentChorVol 71539.000 3rd4th5thCSF 7437.000 CSFVol 2009.000, OptChiasmVol 228.000 MaskVol 1660918.000 Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 390 segmentations Computing statistics for each segmentation Reporting on 70 segmentations Using PrintSegStat mri_segstats done /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label #-------------------------------------------- #@# BA_exvivo Labels lh za mrt 23 05:05:08 CET 2019 mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA1_exvivo.label --trgsubject sub025 --trglabel ./lh.BA1_exvivo.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA1_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.BA1_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 4129 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4129 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 492 Checking for and removing duplicates Writing label file ./lh.BA1_exvivo.label 4621 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA2_exvivo.label --trgsubject sub025 --trglabel ./lh.BA2_exvivo.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA2_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.BA2_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 7909 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7909 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 897 Checking for and removing duplicates Writing label file ./lh.BA2_exvivo.label 8806 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA3a_exvivo.label --trgsubject sub025 --trglabel ./lh.BA3a_exvivo.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA3a_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.BA3a_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 4077 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4077 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 218 Checking for and removing duplicates Writing label file ./lh.BA3a_exvivo.label 4295 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA3b_exvivo.label --trgsubject sub025 --trglabel ./lh.BA3b_exvivo.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA3b_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.BA3b_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 5983 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5983 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 499 Checking for and removing duplicates Writing label file ./lh.BA3b_exvivo.label 6482 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA4a_exvivo.label --trgsubject sub025 --trglabel ./lh.BA4a_exvivo.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA4a_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.BA4a_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 5784 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5784 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 759 Checking for and removing duplicates Writing label file ./lh.BA4a_exvivo.label 6543 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA4p_exvivo.label --trgsubject sub025 --trglabel ./lh.BA4p_exvivo.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA4p_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.BA4p_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 4070 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4070 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 238 Checking for and removing duplicates Writing label file ./lh.BA4p_exvivo.label 4308 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA6_exvivo.label --trgsubject sub025 --trglabel ./lh.BA6_exvivo.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA6_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.BA6_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 13589 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 13589 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 2271 Checking for and removing duplicates Writing label file ./lh.BA6_exvivo.label 15860 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA44_exvivo.label --trgsubject sub025 --trglabel ./lh.BA44_exvivo.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA44_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.BA44_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 4181 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4181 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 327 Checking for and removing duplicates Writing label file ./lh.BA44_exvivo.label 4508 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA45_exvivo.label --trgsubject sub025 --trglabel ./lh.BA45_exvivo.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA45_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.BA45_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 3422 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3422 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 671 Checking for and removing duplicates Writing label file ./lh.BA45_exvivo.label 4093 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.V1_exvivo.label --trgsubject sub025 --trglabel ./lh.V1_exvivo.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.V1_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.V1_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 4641 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4641 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 968 Checking for and removing duplicates Writing label file ./lh.V1_exvivo.label 5609 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.V2_exvivo.label --trgsubject sub025 --trglabel ./lh.V2_exvivo.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.V2_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.V2_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 8114 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8114 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 3351 Checking for and removing duplicates Writing label file ./lh.V2_exvivo.label 11465 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.MT_exvivo.label --trgsubject sub025 --trglabel ./lh.MT_exvivo.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.MT_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.MT_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 2018 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2018 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 299 Checking for and removing duplicates Writing label file ./lh.MT_exvivo.label 2317 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.entorhinal_exvivo.label --trgsubject sub025 --trglabel ./lh.entorhinal_exvivo.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.entorhinal_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.entorhinal_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 1290 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1290 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 56 Checking for and removing duplicates Writing label file ./lh.entorhinal_exvivo.label 1346 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.perirhinal_exvivo.label --trgsubject sub025 --trglabel ./lh.perirhinal_exvivo.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.perirhinal_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.perirhinal_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 1199 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1199 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 43 Checking for and removing duplicates Writing label file ./lh.perirhinal_exvivo.label 1242 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA1_exvivo.thresh.label --trgsubject sub025 --trglabel ./lh.BA1_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.BA1_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 1014 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1014 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 116 Checking for and removing duplicates Writing label file ./lh.BA1_exvivo.thresh.label 1130 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA2_exvivo.thresh.label --trgsubject sub025 --trglabel ./lh.BA2_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.BA2_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 2092 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2092 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 312 Checking for and removing duplicates Writing label file ./lh.BA2_exvivo.thresh.label 2404 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA3a_exvivo.thresh.label --trgsubject sub025 --trglabel ./lh.BA3a_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA3a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.BA3a_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 1504 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1504 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 57 Checking for and removing duplicates Writing label file ./lh.BA3a_exvivo.thresh.label 1561 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA3b_exvivo.thresh.label --trgsubject sub025 --trglabel ./lh.BA3b_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA3b_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.BA3b_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 1996 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1996 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 174 Checking for and removing duplicates Writing label file ./lh.BA3b_exvivo.thresh.label 2170 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA4a_exvivo.thresh.label --trgsubject sub025 --trglabel ./lh.BA4a_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA4a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.BA4a_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 2319 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2319 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 257 Checking for and removing duplicates Writing label file ./lh.BA4a_exvivo.thresh.label 2576 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA4p_exvivo.thresh.label --trgsubject sub025 --trglabel ./lh.BA4p_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA4p_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.BA4p_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 1549 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1549 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 52 Checking for and removing duplicates Writing label file ./lh.BA4p_exvivo.thresh.label 1601 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA6_exvivo.thresh.label --trgsubject sub025 --trglabel ./lh.BA6_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA6_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.BA6_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 7035 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7035 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 1167 Checking for and removing duplicates Writing label file ./lh.BA6_exvivo.thresh.label 8202 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA44_exvivo.thresh.label --trgsubject sub025 --trglabel ./lh.BA44_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA44_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.BA44_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 1912 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1912 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 102 Checking for and removing duplicates Writing label file ./lh.BA44_exvivo.thresh.label 2014 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA45_exvivo.thresh.label --trgsubject sub025 --trglabel ./lh.BA45_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.BA45_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.BA45_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 1151 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1151 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 161 Checking for and removing duplicates Writing label file ./lh.BA45_exvivo.thresh.label 1312 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.V1_exvivo.thresh.label --trgsubject sub025 --trglabel ./lh.V1_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.V1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.V1_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 3405 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3405 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 570 Checking for and removing duplicates Writing label file ./lh.V1_exvivo.thresh.label 3975 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.V2_exvivo.thresh.label --trgsubject sub025 --trglabel ./lh.V2_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.V2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.V2_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 3334 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3334 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 1466 Checking for and removing duplicates Writing label file ./lh.V2_exvivo.thresh.label 4800 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.MT_exvivo.thresh.label --trgsubject sub025 --trglabel ./lh.MT_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.MT_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.MT_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 513 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 513 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 87 Checking for and removing duplicates Writing label file ./lh.MT_exvivo.thresh.label 600 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.entorhinal_exvivo.thresh.label --trgsubject sub025 --trglabel ./lh.entorhinal_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.entorhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.entorhinal_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 470 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 470 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 19 Checking for and removing duplicates Writing label file ./lh.entorhinal_exvivo.thresh.label 489 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.perirhinal_exvivo.thresh.label --trgsubject sub025 --trglabel ./lh.perirhinal_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/lh.perirhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./lh.perirhinal_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 450 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 450 nlabel points Performing mapping from target back to the source label 135752 Number of reverse mapping hits = 19 Checking for and removing duplicates Writing label file ./lh.perirhinal_exvivo.thresh.label 469 mri_label2label: Done mris_label2annot --s sub025 --hemi lh --ctab /opt/freesurfer/6.0/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.entorhinal_exvivo.label --l lh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose Reading ctab /opt/freesurfer/6.0/average/colortable_BA.txt Number of ctab entries 15 $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $ cwd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label cmdline mris_label2annot --s sub025 --hemi lh --ctab /opt/freesurfer/6.0/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.entorhinal_exvivo.label --l lh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam subject sub025 hemi lh SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer ColorTable /opt/freesurfer/6.0/average/colortable_BA.txt AnnotName BA_exvivo nlables 14 LabelThresh 0 0.000000 Loading /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.orig 1 1530880 BA1_exvivo 2 16749699 BA2_exvivo 3 16711680 BA3a_exvivo 4 3368703 BA3b_exvivo 5 1376196 BA4a_exvivo 6 13382655 BA4p_exvivo 7 10036737 BA6_exvivo 8 2490521 BA44_exvivo 9 39283 BA45_exvivo 10 3993 V1_exvivo 11 8508928 V2_exvivo 12 10027163 MT_exvivo 13 16422433 perirhinal_exvivo 14 16392598 entorhinal_exvivo Mapping unhit to unknown Found 92225 unhit vertices Writing annot to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/lh.BA_exvivo.annot mris_label2annot --s sub025 --hemi lh --ctab /opt/freesurfer/6.0/average/colortable_BA.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose Reading ctab /opt/freesurfer/6.0/average/colortable_BA.txt Number of ctab entries 15 $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $ cwd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label cmdline mris_label2annot --s sub025 --hemi lh --ctab /opt/freesurfer/6.0/average/colortable_BA.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam subject sub025 hemi lh SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer ColorTable /opt/freesurfer/6.0/average/colortable_BA.txt AnnotName BA_exvivo.thresh nlables 14 LabelThresh 0 0.000000 Loading /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.orig 1 1530880 BA1_exvivo 2 16749699 BA2_exvivo 3 16711680 BA3a_exvivo 4 3368703 BA3b_exvivo 5 1376196 BA4a_exvivo 6 13382655 BA4p_exvivo 7 10036737 BA6_exvivo 8 2490521 BA44_exvivo 9 39283 BA45_exvivo 10 3993 V1_exvivo 11 8508928 V2_exvivo 12 10027163 MT_exvivo 13 16422433 perirhinal_exvivo 14 16392598 entorhinal_exvivo Mapping unhit to unknown Found 110158 unhit vertices Writing annot to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/lh.BA_exvivo.thresh.annot mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.stats -b -a ./lh.BA_exvivo.annot -c ./BA_exvivo.ctab sub025 lh white computing statistics for each annotation in ./lh.BA_exvivo.annot. reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/wm.mgz... reading input surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white... reading input pial surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.pial... reading input white surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 212004 Total vertex volume 208706 (mask=0) reading colortable from annotation file... colortable with 15 entries read (originally /opt/freesurfer/6.0/average/colortable_BA.txt) Saving annotation colortable ./BA_exvivo.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1729060 mm^3 (det: 1.126685 ) lhCtxGM: 208866.020 208522.000 diff= 344.0 pctdiff= 0.165 rhCtxGM: 204194.162 204014.000 diff= 180.2 pctdiff= 0.088 lhCtxWM: 198861.260 199196.500 diff= -335.2 pctdiff=-0.169 rhCtxWM: 203593.850 204731.500 diff=-1137.6 pctdiff=-0.559 SubCortGMVol 50656.000 SupraTentVol 939260.292 (938685.000) diff=575.292 pctdiff=0.061 SupraTentVolNotVent 867721.292 (867146.000) diff=575.292 pctdiff=0.066 BrainSegVol 1071577.000 (1066149.000) diff=5428.000 pctdiff=0.507 BrainSegVolNotVent 992601.000 (991424.292) diff=1176.708 pctdiff=0.119 BrainSegVolNotVent 992601.000 CerebellumVol 125227.000 VentChorVol 71539.000 3rd4th5thCSF 7437.000 CSFVol 2009.000, OptChiasmVol 228.000 MaskVol 1660918.000 1333 697 1658 2.014 0.621 0.129 0.043 18 2.5 BA1_exvivo 4519 2811 5759 2.009 0.494 0.107 0.034 43 6.6 BA2_exvivo 1127 846 1206 1.671 0.428 0.121 0.029 7 1.4 BA3a_exvivo 2634 1627 3051 1.742 0.550 0.118 0.043 31 4.9 BA3b_exvivo 1939 1062 3001 2.646 0.672 0.129 0.049 23 4.4 BA4a_exvivo 1359 989 2288 2.538 0.679 0.124 0.032 10 2.1 BA4p_exvivo 10819 6064 17590 2.638 0.603 0.121 0.049 156 23.1 BA6_exvivo 2173 1341 3747 2.566 0.498 0.106 0.032 22 2.7 BA44_exvivo 2811 1664 3860 2.167 0.477 0.127 0.049 39 5.8 BA45_exvivo 3018 2039 3654 1.736 0.511 0.136 0.038 33 5.1 V1_exvivo 9034 5392 12893 2.148 0.655 0.131 0.040 113 15.2 V2_exvivo 1662 993 2479 2.308 0.687 0.108 0.040 18 2.3 MT_exvivo 532 330 2125 3.928 0.755 0.118 0.036 5 0.9 perirhinal_exvivo 567 393 1519 3.078 1.115 0.123 0.039 6 0.7 entorhinal_exvivo mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.thresh.stats -b -a ./lh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab sub025 lh white computing statistics for each annotation in ./lh.BA_exvivo.thresh.annot. reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/wm.mgz... reading input surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white... reading input pial surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.pial... reading input white surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 212004 Total vertex volume 208706 (mask=0) reading colortable from annotation file... colortable with 15 entries read (originally /opt/freesurfer/6.0/average/colortable_BA.txt) Saving annotation colortable ./BA_exvivo.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1729060 mm^3 (det: 1.126685 ) lhCtxGM: 208866.020 208522.000 diff= 344.0 pctdiff= 0.165 rhCtxGM: 204194.162 204014.000 diff= 180.2 pctdiff= 0.088 lhCtxWM: 198861.260 199196.500 diff= -335.2 pctdiff=-0.169 rhCtxWM: 203593.850 204731.500 diff=-1137.6 pctdiff=-0.559 SubCortGMVol 50656.000 SupraTentVol 939260.292 (938685.000) diff=575.292 pctdiff=0.061 SupraTentVolNotVent 867721.292 (867146.000) diff=575.292 pctdiff=0.066 BrainSegVol 1071577.000 (1066149.000) diff=5428.000 pctdiff=0.507 BrainSegVolNotVent 992601.000 (991424.292) diff=1176.708 pctdiff=0.119 BrainSegVolNotVent 992601.000 CerebellumVol 125227.000 VentChorVol 71539.000 3rd4th5thCSF 7437.000 CSFVol 2009.000, OptChiasmVol 228.000 MaskVol 1660918.000 859 432 998 1.894 0.602 0.135 0.047 14 1.7 BA1_exvivo 1954 1194 2432 2.017 0.516 0.106 0.033 15 2.8 BA2_exvivo 948 723 972 1.629 0.334 0.127 0.030 6 1.3 BA3a_exvivo 1634 1096 1622 1.488 0.334 0.101 0.025 10 1.8 BA3b_exvivo 1886 1070 2929 2.634 0.648 0.121 0.043 20 3.6 BA4a_exvivo 1062 810 1818 2.492 0.611 0.134 0.036 9 1.9 BA4p_exvivo 6273 3466 10180 2.685 0.613 0.120 0.045 78 12.1 BA6_exvivo 1292 773 2288 2.547 0.502 0.114 0.038 17 2.0 BA44_exvivo 1011 565 1405 2.208 0.447 0.116 0.048 12 1.9 BA45_exvivo 3217 2147 3948 1.747 0.516 0.134 0.037 35 5.4 V1_exvivo 4419 2657 5761 2.026 0.589 0.139 0.042 57 8.0 V2_exvivo 462 218 836 2.900 0.865 0.099 0.041 14 0.5 MT_exvivo 266 175 1260 4.202 0.577 0.100 0.024 1 0.3 perirhinal_exvivo 311 208 771 3.120 0.931 0.122 0.037 3 0.5 entorhinal_exvivo #-------------------------------------------- #@# BA_exvivo Labels rh za mrt 23 05:09:46 CET 2019 mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA1_exvivo.label --trgsubject sub025 --trglabel ./rh.BA1_exvivo.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA1_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.BA1_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 3962 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3962 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 240 Checking for and removing duplicates Writing label file ./rh.BA1_exvivo.label 4202 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA2_exvivo.label --trgsubject sub025 --trglabel ./rh.BA2_exvivo.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA2_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.BA2_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 6687 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6687 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 382 Checking for and removing duplicates Writing label file ./rh.BA2_exvivo.label 7069 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA3a_exvivo.label --trgsubject sub025 --trglabel ./rh.BA3a_exvivo.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA3a_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.BA3a_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 3980 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3980 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 165 Checking for and removing duplicates Writing label file ./rh.BA3a_exvivo.label 4145 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA3b_exvivo.label --trgsubject sub025 --trglabel ./rh.BA3b_exvivo.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA3b_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.BA3b_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 4522 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4522 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 252 Checking for and removing duplicates Writing label file ./rh.BA3b_exvivo.label 4774 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA4a_exvivo.label --trgsubject sub025 --trglabel ./rh.BA4a_exvivo.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA4a_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.BA4a_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 5747 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5747 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 443 Checking for and removing duplicates Writing label file ./rh.BA4a_exvivo.label 6190 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA4p_exvivo.label --trgsubject sub025 --trglabel ./rh.BA4p_exvivo.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA4p_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.BA4p_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 4473 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4473 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 224 Checking for and removing duplicates Writing label file ./rh.BA4p_exvivo.label 4697 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA6_exvivo.label --trgsubject sub025 --trglabel ./rh.BA6_exvivo.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA6_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.BA6_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 12256 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 12256 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 1979 Checking for and removing duplicates Writing label file ./rh.BA6_exvivo.label 14235 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA44_exvivo.label --trgsubject sub025 --trglabel ./rh.BA44_exvivo.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA44_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.BA44_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 6912 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6912 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 1240 Checking for and removing duplicates Writing label file ./rh.BA44_exvivo.label 8152 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA45_exvivo.label --trgsubject sub025 --trglabel ./rh.BA45_exvivo.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA45_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.BA45_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 5355 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5355 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 724 Checking for and removing duplicates Writing label file ./rh.BA45_exvivo.label 6079 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.V1_exvivo.label --trgsubject sub025 --trglabel ./rh.V1_exvivo.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.V1_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.V1_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 4727 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4727 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 1463 Checking for and removing duplicates Writing label file ./rh.V1_exvivo.label 6190 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.V2_exvivo.label --trgsubject sub025 --trglabel ./rh.V2_exvivo.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.V2_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.V2_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 8016 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8016 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 3736 Checking for and removing duplicates Writing label file ./rh.V2_exvivo.label 11752 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.MT_exvivo.label --trgsubject sub025 --trglabel ./rh.MT_exvivo.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.MT_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.MT_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 1932 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1932 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 543 Checking for and removing duplicates Writing label file ./rh.MT_exvivo.label 2475 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.entorhinal_exvivo.label --trgsubject sub025 --trglabel ./rh.entorhinal_exvivo.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.entorhinal_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.entorhinal_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 1038 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1038 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 85 Checking for and removing duplicates Writing label file ./rh.entorhinal_exvivo.label 1123 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.perirhinal_exvivo.label --trgsubject sub025 --trglabel ./rh.perirhinal_exvivo.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.perirhinal_exvivo.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.perirhinal_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 752 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 752 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 50 Checking for and removing duplicates Writing label file ./rh.perirhinal_exvivo.label 802 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA1_exvivo.thresh.label --trgsubject sub025 --trglabel ./rh.BA1_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.BA1_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 876 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 876 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 41 Checking for and removing duplicates Writing label file ./rh.BA1_exvivo.thresh.label 917 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA2_exvivo.thresh.label --trgsubject sub025 --trglabel ./rh.BA2_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.BA2_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 2688 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2688 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 126 Checking for and removing duplicates Writing label file ./rh.BA2_exvivo.thresh.label 2814 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA3a_exvivo.thresh.label --trgsubject sub025 --trglabel ./rh.BA3a_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA3a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.BA3a_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 1698 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1698 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 54 Checking for and removing duplicates Writing label file ./rh.BA3a_exvivo.thresh.label 1752 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA3b_exvivo.thresh.label --trgsubject sub025 --trglabel ./rh.BA3b_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA3b_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.BA3b_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 2183 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2183 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 144 Checking for and removing duplicates Writing label file ./rh.BA3b_exvivo.thresh.label 2327 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA4a_exvivo.thresh.label --trgsubject sub025 --trglabel ./rh.BA4a_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA4a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.BA4a_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 1388 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1388 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 104 Checking for and removing duplicates Writing label file ./rh.BA4a_exvivo.thresh.label 1492 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA4p_exvivo.thresh.label --trgsubject sub025 --trglabel ./rh.BA4p_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA4p_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.BA4p_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 1489 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1489 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 88 Checking for and removing duplicates Writing label file ./rh.BA4p_exvivo.thresh.label 1577 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA6_exvivo.thresh.label --trgsubject sub025 --trglabel ./rh.BA6_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA6_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.BA6_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 6959 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6959 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 927 Checking for and removing duplicates Writing label file ./rh.BA6_exvivo.thresh.label 7886 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA44_exvivo.thresh.label --trgsubject sub025 --trglabel ./rh.BA44_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA44_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.BA44_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 1012 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1012 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 116 Checking for and removing duplicates Writing label file ./rh.BA44_exvivo.thresh.label 1128 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA45_exvivo.thresh.label --trgsubject sub025 --trglabel ./rh.BA45_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.BA45_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.BA45_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 1178 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1178 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 123 Checking for and removing duplicates Writing label file ./rh.BA45_exvivo.thresh.label 1301 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.V1_exvivo.thresh.label --trgsubject sub025 --trglabel ./rh.V1_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.V1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.V1_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 3232 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3232 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 828 Checking for and removing duplicates Writing label file ./rh.V1_exvivo.thresh.label 4060 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.V2_exvivo.thresh.label --trgsubject sub025 --trglabel ./rh.V2_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.V2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.V2_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 3437 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3437 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 1720 Checking for and removing duplicates Writing label file ./rh.V2_exvivo.thresh.label 5157 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.MT_exvivo.thresh.label --trgsubject sub025 --trglabel ./rh.MT_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.MT_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.MT_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 268 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 268 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 92 Checking for and removing duplicates Writing label file ./rh.MT_exvivo.thresh.label 360 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.entorhinal_exvivo.thresh.label --trgsubject sub025 --trglabel ./rh.entorhinal_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.entorhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.entorhinal_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 694 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 694 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 31 Checking for and removing duplicates Writing label file ./rh.entorhinal_exvivo.thresh.label 725 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.perirhinal_exvivo.thresh.label --trgsubject sub025 --trglabel ./rh.perirhinal_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/label/rh.perirhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub025 trglabel = ./rh.perirhinal_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Loading source label. Found 291 points in source label. Starting surface-based mapping Reading source registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white Reading target registration /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 291 nlabel points Performing mapping from target back to the source label 138125 Number of reverse mapping hits = 9 Checking for and removing duplicates Writing label file ./rh.perirhinal_exvivo.thresh.label 300 mri_label2label: Done mris_label2annot --s sub025 --hemi rh --ctab /opt/freesurfer/6.0/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.entorhinal_exvivo.label --l rh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose Reading ctab /opt/freesurfer/6.0/average/colortable_BA.txt Number of ctab entries 15 $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $ cwd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label cmdline mris_label2annot --s sub025 --hemi rh --ctab /opt/freesurfer/6.0/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.entorhinal_exvivo.label --l rh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam subject sub025 hemi rh SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer ColorTable /opt/freesurfer/6.0/average/colortable_BA.txt AnnotName BA_exvivo nlables 14 LabelThresh 0 0.000000 Loading /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.orig 1 1530880 BA1_exvivo 2 16749699 BA2_exvivo 3 16711680 BA3a_exvivo 4 3368703 BA3b_exvivo 5 1376196 BA4a_exvivo 6 13382655 BA4p_exvivo 7 10036737 BA6_exvivo 8 2490521 BA44_exvivo 9 39283 BA45_exvivo 10 3993 V1_exvivo 11 8508928 V2_exvivo 12 10027163 MT_exvivo 13 16422433 perirhinal_exvivo 14 16392598 entorhinal_exvivo Mapping unhit to unknown Found 94559 unhit vertices Writing annot to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/rh.BA_exvivo.annot mris_label2annot --s sub025 --hemi rh --ctab /opt/freesurfer/6.0/average/colortable_BA.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose Reading ctab /opt/freesurfer/6.0/average/colortable_BA.txt Number of ctab entries 15 $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $ cwd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label cmdline mris_label2annot --s sub025 --hemi rh --ctab /opt/freesurfer/6.0/average/colortable_BA.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam subject sub025 hemi rh SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer ColorTable /opt/freesurfer/6.0/average/colortable_BA.txt AnnotName BA_exvivo.thresh nlables 14 LabelThresh 0 0.000000 Loading /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.orig 1 1530880 BA1_exvivo 2 16749699 BA2_exvivo 3 16711680 BA3a_exvivo 4 3368703 BA3b_exvivo 5 1376196 BA4a_exvivo 6 13382655 BA4p_exvivo 7 10036737 BA6_exvivo 8 2490521 BA44_exvivo 9 39283 BA45_exvivo 10 3993 V1_exvivo 11 8508928 V2_exvivo 12 10027163 MT_exvivo 13 16422433 perirhinal_exvivo 14 16392598 entorhinal_exvivo Mapping unhit to unknown Found 114147 unhit vertices Writing annot to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/label/rh.BA_exvivo.thresh.annot mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.stats -b -a ./rh.BA_exvivo.annot -c ./BA_exvivo.ctab sub025 rh white computing statistics for each annotation in ./rh.BA_exvivo.annot. reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/wm.mgz... reading input surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white... reading input pial surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.pial... reading input white surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 207812 Total vertex volume 204672 (mask=0) reading colortable from annotation file... colortable with 15 entries read (originally /opt/freesurfer/6.0/average/colortable_BA.txt) Saving annotation colortable ./BA_exvivo.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1729060 mm^3 (det: 1.126685 ) lhCtxGM: 208866.020 208522.000 diff= 344.0 pctdiff= 0.165 rhCtxGM: 204194.162 204014.000 diff= 180.2 pctdiff= 0.088 lhCtxWM: 198861.260 199196.500 diff= -335.2 pctdiff=-0.169 rhCtxWM: 203593.850 204731.500 diff=-1137.6 pctdiff=-0.559 SubCortGMVol 50656.000 SupraTentVol 939260.292 (938685.000) diff=575.292 pctdiff=0.061 SupraTentVolNotVent 867721.292 (867146.000) diff=575.292 pctdiff=0.066 BrainSegVol 1071577.000 (1066149.000) diff=5428.000 pctdiff=0.507 BrainSegVolNotVent 992601.000 (991424.292) diff=1176.708 pctdiff=0.119 BrainSegVolNotVent 992601.000 CerebellumVol 125227.000 VentChorVol 71539.000 3rd4th5thCSF 7437.000 CSFVol 2009.000, OptChiasmVol 228.000 MaskVol 1660918.000 939 499 1017 1.728 0.515 0.131 0.038 13 1.5 BA1_exvivo 3393 2151 3594 1.688 0.446 0.125 0.036 38 5.6 BA2_exvivo 1153 869 1092 1.514 0.343 0.122 0.027 7 1.4 BA3a_exvivo 2109 1388 2074 1.477 0.397 0.115 0.026 18 2.6 BA3b_exvivo 1707 1056 2509 2.262 0.579 0.119 0.036 13 2.9 BA4a_exvivo 1402 990 2268 2.446 0.603 0.116 0.030 8 2.1 BA4p_exvivo 9419 5444 14424 2.518 0.629 0.121 0.045 124 19.3 BA6_exvivo 3930 2311 6146 2.496 0.538 0.112 0.043 46 7.2 BA44_exvivo 3596 2055 5579 2.346 0.594 0.122 0.051 84 7.7 BA45_exvivo 3600 2335 4142 1.698 0.463 0.138 0.042 42 7.0 V1_exvivo 9352 5606 12722 2.124 0.610 0.135 0.042 123 16.8 V2_exvivo 2126 1258 3008 2.354 0.619 0.123 0.052 32 5.0 MT_exvivo 517 330 1648 3.247 0.906 0.113 0.038 6 0.9 perirhinal_exvivo 323 206 1124 3.551 0.822 0.106 0.044 4 0.5 entorhinal_exvivo mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.thresh.stats -b -a ./rh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab sub025 rh white computing statistics for each annotation in ./rh.BA_exvivo.thresh.annot. reading volume /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/mri/wm.mgz... reading input surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white... reading input pial surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.pial... reading input white surface /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 207812 Total vertex volume 204672 (mask=0) reading colortable from annotation file... colortable with 15 entries read (originally /opt/freesurfer/6.0/average/colortable_BA.txt) Saving annotation colortable ./BA_exvivo.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1729060 mm^3 (det: 1.126685 ) lhCtxGM: 208866.020 208522.000 diff= 344.0 pctdiff= 0.165 rhCtxGM: 204194.162 204014.000 diff= 180.2 pctdiff= 0.088 lhCtxWM: 198861.260 199196.500 diff= -335.2 pctdiff=-0.169 rhCtxWM: 203593.850 204731.500 diff=-1137.6 pctdiff=-0.559 SubCortGMVol 50656.000 SupraTentVol 939260.292 (938685.000) diff=575.292 pctdiff=0.061 SupraTentVolNotVent 867721.292 (867146.000) diff=575.292 pctdiff=0.066 BrainSegVol 1071577.000 (1066149.000) diff=5428.000 pctdiff=0.507 BrainSegVolNotVent 992601.000 (991424.292) diff=1176.708 pctdiff=0.119 BrainSegVolNotVent 992601.000 CerebellumVol 125227.000 VentChorVol 71539.000 3rd4th5thCSF 7437.000 CSFVol 2009.000, OptChiasmVol 228.000 MaskVol 1660918.000 610 334 626 1.566 0.364 0.140 0.040 8 1.1 BA1_exvivo 1874 1179 1986 1.701 0.481 0.118 0.031 18 2.6 BA2_exvivo 1055 807 970 1.502 0.325 0.124 0.025 6 1.2 BA3a_exvivo 1674 1172 1523 1.365 0.231 0.107 0.021 11 1.6 BA3b_exvivo 1042 642 1473 2.191 0.651 0.134 0.042 11 2.2 BA4a_exvivo 1141 848 1991 2.548 0.565 0.112 0.027 5 1.6 BA4p_exvivo 5826 3323 9107 2.569 0.642 0.121 0.046 86 12.0 BA6_exvivo 823 495 1437 2.482 0.602 0.114 0.061 13 2.2 BA44_exvivo 870 492 1439 2.346 0.493 0.126 0.070 41 2.7 BA45_exvivo 3411 2226 3862 1.690 0.465 0.139 0.041 40 6.6 V1_exvivo 4806 2909 6483 2.079 0.594 0.145 0.045 66 9.4 V2_exvivo 331 165 423 2.284 0.525 0.112 0.038 4 0.5 MT_exvivo 300 195 1030 3.505 0.674 0.091 0.017 2 0.2 perirhinal_exvivo 215 153 779 3.822 0.798 0.101 0.021 1 0.2 entorhinal_exvivo #-------------------------------------------- #@# Qdec Cache preproc lh thickness fsaverage za mrt 23 05:14:26 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_preproc --s sub025 --hemi lh --meas thickness --target fsaverage --out lh.thickness.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.149222 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf Log file is lh.thickness.fsaverage.mris_preproc.log za mrt 23 05:14:26 CET 2019 setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf /opt/freesurfer/6.0/bin/mris_preproc --s sub025 --hemi lh --meas thickness --target fsaverage --out lh.thickness.fsaverage.mgh Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.149222 Src lh sphere.reg Trg lh sphere.reg --------------------------------------------------- #@# 1/1 sub025 za mrt 23 05:14:26 CET 2019 -------------- ----------------------- mri_surf2surf --srcsubject sub025 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.149222/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.thickness --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --srcsubject sub025 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.149222/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.thickness --sfmt curv --noreshape --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = sub025 srcval = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.thickness srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.149222/sub025.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Loading source data Reading curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.thickness Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (135752) Reverse Loop had 24558 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 146702, nTrgMulti = 17140, MnTrgMultiHits = 2.43279 nSrc121 = 95592, nSrcLost = 0, nSrcMulti = 40160, MnSrcMultiHits = 2.31096 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.149222/sub025.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.149222/sub025.1.mgh --o lh.thickness.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to lh.thickness.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.149222 za mrt 23 05:14:32 CET 2019 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc lh area fsaverage za mrt 23 05:14:32 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_preproc --s sub025 --hemi lh --meas area --target fsaverage --out lh.area.fsaverage.mgh nsubjects = 1 INFO: turning on jacobican correction tmpdir is ./tmp.mris_preproc.149336 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf Log file is lh.area.fsaverage.mris_preproc.log za mrt 23 05:14:32 CET 2019 setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf /opt/freesurfer/6.0/bin/mris_preproc --s sub025 --hemi lh --meas area --target fsaverage --out lh.area.fsaverage.mgh Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.149336 Src lh sphere.reg Trg lh sphere.reg --------------------------------------------------- #@# 1/1 sub025 za mrt 23 05:14:32 CET 2019 -------------- ----------------------- mri_surf2surf --srcsubject sub025 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.149336/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.area --jac --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --srcsubject sub025 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.149336/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.area --jac --sfmt curv --noreshape --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = sub025 srcval = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.area srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.149336/sub025.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Loading source data Reading curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.area Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface with Jacobian Correction surf2surf_nnfr_jac: building source hash (res=16). Surf2SurfJac: 1st Forward Loop (163842) Surf2SurfJac: 2nd Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2SurfJac: Reverse Loop (135752) Reverse Loop had 24558 hits INFO: nSrcLost = 0 surf2surf_nnfr_jac() done nTrg121 = 146702, nTrgMulti = 17140, MnTrgMultiHits = 2.43279 nSrc121 = 95592, nSrcLost = 0, nSrcMulti = 40160, MnSrcMultiHits = 2.31096 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.149336/sub025.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.149336/sub025.1.mgh --o lh.area.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to lh.area.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.149336 za mrt 23 05:14:40 CET 2019 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc lh area.pial fsaverage za mrt 23 05:14:40 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_preproc --s sub025 --hemi lh --meas area.pial --target fsaverage --out lh.area.pial.fsaverage.mgh nsubjects = 1 INFO: turning on jacobican correction tmpdir is ./tmp.mris_preproc.149447 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf Log file is lh.area.pial.fsaverage.mris_preproc.log za mrt 23 05:14:40 CET 2019 setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf /opt/freesurfer/6.0/bin/mris_preproc --s sub025 --hemi lh --meas area.pial --target fsaverage --out lh.area.pial.fsaverage.mgh Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.149447 Src lh sphere.reg Trg lh sphere.reg --------------------------------------------------- #@# 1/1 sub025 za mrt 23 05:14:40 CET 2019 -------------- ----------------------- mri_surf2surf --srcsubject sub025 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.149447/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.area.pial --jac --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --srcsubject sub025 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.149447/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.area.pial --jac --sfmt curv --noreshape --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = sub025 srcval = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.area.pial srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.149447/sub025.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Loading source data Reading curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.area.pial Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface with Jacobian Correction surf2surf_nnfr_jac: building source hash (res=16). Surf2SurfJac: 1st Forward Loop (163842) Surf2SurfJac: 2nd Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2SurfJac: Reverse Loop (135752) Reverse Loop had 24558 hits INFO: nSrcLost = 0 surf2surf_nnfr_jac() done nTrg121 = 146702, nTrgMulti = 17140, MnTrgMultiHits = 2.43279 nSrc121 = 95592, nSrcLost = 0, nSrcMulti = 40160, MnSrcMultiHits = 2.31096 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.149447/sub025.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.149447/sub025.1.mgh --o lh.area.pial.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to lh.area.pial.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.149447 za mrt 23 05:14:48 CET 2019 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc lh volume fsaverage za mrt 23 05:14:48 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_preproc --s sub025 --hemi lh --meas volume --target fsaverage --out lh.volume.fsaverage.mgh nsubjects = 1 INFO: turning on jacobican correction tmpdir is ./tmp.mris_preproc.149559 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf Log file is lh.volume.fsaverage.mris_preproc.log za mrt 23 05:14:48 CET 2019 setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf /opt/freesurfer/6.0/bin/mris_preproc --s sub025 --hemi lh --meas volume --target fsaverage --out lh.volume.fsaverage.mgh Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.149559 Src lh sphere.reg Trg lh sphere.reg --------------------------------------------------- #@# 1/1 sub025 za mrt 23 05:14:48 CET 2019 -------------- ----------------------- mri_surf2surf --srcsubject sub025 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.149559/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.volume --jac --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --srcsubject sub025 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.149559/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.volume --jac --sfmt curv --noreshape --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = sub025 srcval = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.volume srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.149559/sub025.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Loading source data Reading curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.volume Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface with Jacobian Correction surf2surf_nnfr_jac: building source hash (res=16). Surf2SurfJac: 1st Forward Loop (163842) Surf2SurfJac: 2nd Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2SurfJac: Reverse Loop (135752) Reverse Loop had 24558 hits INFO: nSrcLost = 0 surf2surf_nnfr_jac() done nTrg121 = 146702, nTrgMulti = 17140, MnTrgMultiHits = 2.43279 nSrc121 = 95592, nSrcLost = 0, nSrcMulti = 40160, MnSrcMultiHits = 2.31096 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.149559/sub025.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.149559/sub025.1.mgh --o lh.volume.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to lh.volume.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.149559 za mrt 23 05:14:55 CET 2019 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc lh curv fsaverage za mrt 23 05:14:55 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_preproc --s sub025 --hemi lh --meas curv --target fsaverage --out lh.curv.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.149671 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf Log file is lh.curv.fsaverage.mris_preproc.log za mrt 23 05:14:55 CET 2019 setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf /opt/freesurfer/6.0/bin/mris_preproc --s sub025 --hemi lh --meas curv --target fsaverage --out lh.curv.fsaverage.mgh Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.149671 Src lh sphere.reg Trg lh sphere.reg --------------------------------------------------- #@# 1/1 sub025 za mrt 23 05:14:56 CET 2019 -------------- ----------------------- mri_surf2surf --srcsubject sub025 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.149671/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.curv --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --srcsubject sub025 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.149671/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.curv --sfmt curv --noreshape --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = sub025 srcval = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.curv srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.149671/sub025.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Loading source data Reading curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.curv Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (135752) Reverse Loop had 24558 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 146702, nTrgMulti = 17140, MnTrgMultiHits = 2.43279 nSrc121 = 95592, nSrcLost = 0, nSrcMulti = 40160, MnSrcMultiHits = 2.31096 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.149671/sub025.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.149671/sub025.1.mgh --o lh.curv.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to lh.curv.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.149671 za mrt 23 05:15:02 CET 2019 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc lh sulc fsaverage za mrt 23 05:15:02 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_preproc --s sub025 --hemi lh --meas sulc --target fsaverage --out lh.sulc.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.149807 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf Log file is lh.sulc.fsaverage.mris_preproc.log za mrt 23 05:15:02 CET 2019 setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf /opt/freesurfer/6.0/bin/mris_preproc --s sub025 --hemi lh --meas sulc --target fsaverage --out lh.sulc.fsaverage.mgh Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.149807 Src lh sphere.reg Trg lh sphere.reg --------------------------------------------------- #@# 1/1 sub025 za mrt 23 05:15:02 CET 2019 -------------- ----------------------- mri_surf2surf --srcsubject sub025 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.149807/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sulc --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --srcsubject sub025 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.149807/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sulc --sfmt curv --noreshape --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = sub025 srcval = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sulc srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.149807/sub025.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Loading source data Reading curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sulc Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (135752) Reverse Loop had 24558 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 146702, nTrgMulti = 17140, MnTrgMultiHits = 2.43279 nSrc121 = 95592, nSrcLost = 0, nSrcMulti = 40160, MnSrcMultiHits = 2.31096 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.149807/sub025.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.149807/sub025.1.mgh --o lh.sulc.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to lh.sulc.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.149807 za mrt 23 05:15:08 CET 2019 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc lh white.K fsaverage za mrt 23 05:15:08 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_preproc --s sub025 --hemi lh --meas white.K --target fsaverage --out lh.white.K.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.149981 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf Log file is lh.white.K.fsaverage.mris_preproc.log za mrt 23 05:15:08 CET 2019 setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf /opt/freesurfer/6.0/bin/mris_preproc --s sub025 --hemi lh --meas white.K --target fsaverage --out lh.white.K.fsaverage.mgh Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.149981 Src lh sphere.reg Trg lh sphere.reg --------------------------------------------------- #@# 1/1 sub025 za mrt 23 05:15:08 CET 2019 -------------- ----------------------- mri_surf2surf --srcsubject sub025 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.149981/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white.K --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --srcsubject sub025 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.149981/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white.K --sfmt curv --noreshape --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = sub025 srcval = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white.K srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.149981/sub025.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Loading source data Reading curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white.K Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (135752) Reverse Loop had 24558 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 146702, nTrgMulti = 17140, MnTrgMultiHits = 2.43279 nSrc121 = 95592, nSrcLost = 0, nSrcMulti = 40160, MnSrcMultiHits = 2.31096 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.149981/sub025.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.149981/sub025.1.mgh --o lh.white.K.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to lh.white.K.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.149981 za mrt 23 05:15:14 CET 2019 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc lh white.H fsaverage za mrt 23 05:15:14 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_preproc --s sub025 --hemi lh --meas white.H --target fsaverage --out lh.white.H.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.150093 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf Log file is lh.white.H.fsaverage.mris_preproc.log za mrt 23 05:15:14 CET 2019 setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf /opt/freesurfer/6.0/bin/mris_preproc --s sub025 --hemi lh --meas white.H --target fsaverage --out lh.white.H.fsaverage.mgh Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.150093 Src lh sphere.reg Trg lh sphere.reg --------------------------------------------------- #@# 1/1 sub025 za mrt 23 05:15:14 CET 2019 -------------- ----------------------- mri_surf2surf --srcsubject sub025 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.150093/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white.H --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --srcsubject sub025 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.150093/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white.H --sfmt curv --noreshape --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = sub025 srcval = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white.H srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.150093/sub025.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Loading source data Reading curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.white.H Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (135752) Reverse Loop had 24558 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 146702, nTrgMulti = 17140, MnTrgMultiHits = 2.43279 nSrc121 = 95592, nSrcLost = 0, nSrcMulti = 40160, MnSrcMultiHits = 2.31096 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.150093/sub025.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.150093/sub025.1.mgh --o lh.white.H.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to lh.white.H.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.150093 za mrt 23 05:15:20 CET 2019 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc lh jacobian_white fsaverage za mrt 23 05:15:20 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_preproc --s sub025 --hemi lh --meas jacobian_white --target fsaverage --out lh.jacobian_white.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.150207 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf Log file is lh.jacobian_white.fsaverage.mris_preproc.log za mrt 23 05:15:20 CET 2019 setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf /opt/freesurfer/6.0/bin/mris_preproc --s sub025 --hemi lh --meas jacobian_white --target fsaverage --out lh.jacobian_white.fsaverage.mgh Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.150207 Src lh sphere.reg Trg lh sphere.reg --------------------------------------------------- #@# 1/1 sub025 za mrt 23 05:15:20 CET 2019 -------------- ----------------------- mri_surf2surf --srcsubject sub025 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.150207/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.jacobian_white --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --srcsubject sub025 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.150207/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.jacobian_white --sfmt curv --noreshape --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = sub025 srcval = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.jacobian_white srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.150207/sub025.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Loading source data Reading curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.jacobian_white Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (135752) Reverse Loop had 24558 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 146702, nTrgMulti = 17140, MnTrgMultiHits = 2.43279 nSrc121 = 95592, nSrcLost = 0, nSrcMulti = 40160, MnSrcMultiHits = 2.31096 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.150207/sub025.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.150207/sub025.1.mgh --o lh.jacobian_white.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to lh.jacobian_white.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.150207 za mrt 23 05:15:26 CET 2019 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc lh w-g.pct.mgh fsaverage za mrt 23 05:15:26 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_preproc --s sub025 --hemi lh --meas w-g.pct.mgh --target fsaverage --out lh.w-g.pct.mgh.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.150321 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf Log file is lh.w-g.pct.mgh.fsaverage.mris_preproc.log za mrt 23 05:15:26 CET 2019 setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf /opt/freesurfer/6.0/bin/mris_preproc --s sub025 --hemi lh --meas w-g.pct.mgh --target fsaverage --out lh.w-g.pct.mgh.fsaverage.mgh Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.150321 Src lh sphere.reg Trg lh sphere.reg --------------------------------------------------- #@# 1/1 sub025 za mrt 23 05:15:26 CET 2019 -------------- ----------------------- mri_surf2surf --srcsubject sub025 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.150321/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.w-g.pct.mgh --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --srcsubject sub025 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.150321/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.w-g.pct.mgh --sfmt curv --noreshape --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = sub025 srcval = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.w-g.pct.mgh srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.150321/sub025.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.sphere.reg Loading source data Reading curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/lh.w-g.pct.mgh Reading source subject label mask lh.cortex.label masking the input Reading target surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (135752) Reverse Loop had 24558 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 146702, nTrgMulti = 17140, MnTrgMultiHits = 2.43279 nSrc121 = 95592, nSrcLost = 0, nSrcMulti = 40160, MnSrcMultiHits = 2.31096 Reading target space mask label lh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.150321/sub025.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.150321/sub025.1.mgh --o lh.w-g.pct.mgh.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to lh.w-g.pct.mgh.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.150321 za mrt 23 05:15:32 CET 2019 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc rh thickness fsaverage za mrt 23 05:15:32 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_preproc --s sub025 --hemi rh --meas thickness --target fsaverage --out rh.thickness.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.150433 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf Log file is rh.thickness.fsaverage.mris_preproc.log za mrt 23 05:15:32 CET 2019 setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf /opt/freesurfer/6.0/bin/mris_preproc --s sub025 --hemi rh --meas thickness --target fsaverage --out rh.thickness.fsaverage.mgh Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.150433 Src rh sphere.reg Trg rh sphere.reg --------------------------------------------------- #@# 1/1 sub025 za mrt 23 05:15:32 CET 2019 -------------- ----------------------- mri_surf2surf --srcsubject sub025 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.150433/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.thickness --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --srcsubject sub025 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.150433/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.thickness --sfmt curv --noreshape --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = sub025 srcval = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.thickness srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.150433/sub025.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Loading source data Reading curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.thickness Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (138125) Reverse Loop had 25987 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 145879, nTrgMulti = 17963, MnTrgMultiHits = 2.4467 nSrc121 = 98872, nSrcLost = 0, nSrcMulti = 39253, MnSrcMultiHits = 2.3172 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.150433/sub025.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.150433/sub025.1.mgh --o rh.thickness.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to rh.thickness.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.150433 za mrt 23 05:15:38 CET 2019 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc rh area fsaverage za mrt 23 05:15:38 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_preproc --s sub025 --hemi rh --meas area --target fsaverage --out rh.area.fsaverage.mgh nsubjects = 1 INFO: turning on jacobican correction tmpdir is ./tmp.mris_preproc.150545 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf Log file is rh.area.fsaverage.mris_preproc.log za mrt 23 05:15:38 CET 2019 setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf /opt/freesurfer/6.0/bin/mris_preproc --s sub025 --hemi rh --meas area --target fsaverage --out rh.area.fsaverage.mgh Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.150545 Src rh sphere.reg Trg rh sphere.reg --------------------------------------------------- #@# 1/1 sub025 za mrt 23 05:15:38 CET 2019 -------------- ----------------------- mri_surf2surf --srcsubject sub025 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.150545/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.area --jac --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --srcsubject sub025 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.150545/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.area --jac --sfmt curv --noreshape --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = sub025 srcval = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.area srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.150545/sub025.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Loading source data Reading curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.area Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface with Jacobian Correction surf2surf_nnfr_jac: building source hash (res=16). Surf2SurfJac: 1st Forward Loop (163842) Surf2SurfJac: 2nd Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2SurfJac: Reverse Loop (138125) Reverse Loop had 25987 hits INFO: nSrcLost = 0 surf2surf_nnfr_jac() done nTrg121 = 145879, nTrgMulti = 17963, MnTrgMultiHits = 2.4467 nSrc121 = 98872, nSrcLost = 0, nSrcMulti = 39253, MnSrcMultiHits = 2.3172 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.150545/sub025.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.150545/sub025.1.mgh --o rh.area.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to rh.area.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.150545 za mrt 23 05:15:46 CET 2019 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc rh area.pial fsaverage za mrt 23 05:15:46 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_preproc --s sub025 --hemi rh --meas area.pial --target fsaverage --out rh.area.pial.fsaverage.mgh nsubjects = 1 INFO: turning on jacobican correction tmpdir is ./tmp.mris_preproc.150656 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf Log file is rh.area.pial.fsaverage.mris_preproc.log za mrt 23 05:15:46 CET 2019 setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf /opt/freesurfer/6.0/bin/mris_preproc --s sub025 --hemi rh --meas area.pial --target fsaverage --out rh.area.pial.fsaverage.mgh Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.150656 Src rh sphere.reg Trg rh sphere.reg --------------------------------------------------- #@# 1/1 sub025 za mrt 23 05:15:46 CET 2019 -------------- ----------------------- mri_surf2surf --srcsubject sub025 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.150656/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.area.pial --jac --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --srcsubject sub025 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.150656/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.area.pial --jac --sfmt curv --noreshape --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = sub025 srcval = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.area.pial srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.150656/sub025.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Loading source data Reading curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.area.pial Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface with Jacobian Correction surf2surf_nnfr_jac: building source hash (res=16). Surf2SurfJac: 1st Forward Loop (163842) Surf2SurfJac: 2nd Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2SurfJac: Reverse Loop (138125) Reverse Loop had 25987 hits INFO: nSrcLost = 0 surf2surf_nnfr_jac() done nTrg121 = 145879, nTrgMulti = 17963, MnTrgMultiHits = 2.4467 nSrc121 = 98872, nSrcLost = 0, nSrcMulti = 39253, MnSrcMultiHits = 2.3172 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.150656/sub025.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.150656/sub025.1.mgh --o rh.area.pial.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to rh.area.pial.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.150656 za mrt 23 05:15:54 CET 2019 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc rh volume fsaverage za mrt 23 05:15:54 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_preproc --s sub025 --hemi rh --meas volume --target fsaverage --out rh.volume.fsaverage.mgh nsubjects = 1 INFO: turning on jacobican correction tmpdir is ./tmp.mris_preproc.150768 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf Log file is rh.volume.fsaverage.mris_preproc.log za mrt 23 05:15:54 CET 2019 setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf /opt/freesurfer/6.0/bin/mris_preproc --s sub025 --hemi rh --meas volume --target fsaverage --out rh.volume.fsaverage.mgh Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.150768 Src rh sphere.reg Trg rh sphere.reg --------------------------------------------------- #@# 1/1 sub025 za mrt 23 05:15:54 CET 2019 -------------- ----------------------- mri_surf2surf --srcsubject sub025 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.150768/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.volume --jac --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --srcsubject sub025 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.150768/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.volume --jac --sfmt curv --noreshape --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = sub025 srcval = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.volume srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.150768/sub025.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Loading source data Reading curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.volume Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface with Jacobian Correction surf2surf_nnfr_jac: building source hash (res=16). Surf2SurfJac: 1st Forward Loop (163842) Surf2SurfJac: 2nd Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2SurfJac: Reverse Loop (138125) Reverse Loop had 25987 hits INFO: nSrcLost = 0 surf2surf_nnfr_jac() done nTrg121 = 145879, nTrgMulti = 17963, MnTrgMultiHits = 2.4467 nSrc121 = 98872, nSrcLost = 0, nSrcMulti = 39253, MnSrcMultiHits = 2.3172 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.150768/sub025.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.150768/sub025.1.mgh --o rh.volume.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to rh.volume.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.150768 za mrt 23 05:16:02 CET 2019 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc rh curv fsaverage za mrt 23 05:16:02 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_preproc --s sub025 --hemi rh --meas curv --target fsaverage --out rh.curv.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.150906 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf Log file is rh.curv.fsaverage.mris_preproc.log za mrt 23 05:16:02 CET 2019 setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf /opt/freesurfer/6.0/bin/mris_preproc --s sub025 --hemi rh --meas curv --target fsaverage --out rh.curv.fsaverage.mgh Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.150906 Src rh sphere.reg Trg rh sphere.reg --------------------------------------------------- #@# 1/1 sub025 za mrt 23 05:16:02 CET 2019 -------------- ----------------------- mri_surf2surf --srcsubject sub025 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.150906/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.curv --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --srcsubject sub025 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.150906/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.curv --sfmt curv --noreshape --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = sub025 srcval = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.curv srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.150906/sub025.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Loading source data Reading curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.curv Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (138125) Reverse Loop had 25987 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 145879, nTrgMulti = 17963, MnTrgMultiHits = 2.4467 nSrc121 = 98872, nSrcLost = 0, nSrcMulti = 39253, MnSrcMultiHits = 2.3172 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.150906/sub025.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.150906/sub025.1.mgh --o rh.curv.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to rh.curv.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.150906 za mrt 23 05:16:08 CET 2019 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc rh sulc fsaverage za mrt 23 05:16:08 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_preproc --s sub025 --hemi rh --meas sulc --target fsaverage --out rh.sulc.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.151019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf Log file is rh.sulc.fsaverage.mris_preproc.log za mrt 23 05:16:08 CET 2019 setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf /opt/freesurfer/6.0/bin/mris_preproc --s sub025 --hemi rh --meas sulc --target fsaverage --out rh.sulc.fsaverage.mgh Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.151019 Src rh sphere.reg Trg rh sphere.reg --------------------------------------------------- #@# 1/1 sub025 za mrt 23 05:16:08 CET 2019 -------------- ----------------------- mri_surf2surf --srcsubject sub025 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.151019/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sulc --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --srcsubject sub025 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.151019/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sulc --sfmt curv --noreshape --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = sub025 srcval = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sulc srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.151019/sub025.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Loading source data Reading curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sulc Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (138125) Reverse Loop had 25987 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 145879, nTrgMulti = 17963, MnTrgMultiHits = 2.4467 nSrc121 = 98872, nSrcLost = 0, nSrcMulti = 39253, MnSrcMultiHits = 2.3172 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.151019/sub025.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.151019/sub025.1.mgh --o rh.sulc.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to rh.sulc.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.151019 za mrt 23 05:16:14 CET 2019 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc rh white.K fsaverage za mrt 23 05:16:14 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_preproc --s sub025 --hemi rh --meas white.K --target fsaverage --out rh.white.K.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.151131 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf Log file is rh.white.K.fsaverage.mris_preproc.log za mrt 23 05:16:15 CET 2019 setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf /opt/freesurfer/6.0/bin/mris_preproc --s sub025 --hemi rh --meas white.K --target fsaverage --out rh.white.K.fsaverage.mgh Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.151131 Src rh sphere.reg Trg rh sphere.reg --------------------------------------------------- #@# 1/1 sub025 za mrt 23 05:16:15 CET 2019 -------------- ----------------------- mri_surf2surf --srcsubject sub025 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.151131/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white.K --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --srcsubject sub025 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.151131/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white.K --sfmt curv --noreshape --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = sub025 srcval = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white.K srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.151131/sub025.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Loading source data Reading curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white.K Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (138125) Reverse Loop had 25987 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 145879, nTrgMulti = 17963, MnTrgMultiHits = 2.4467 nSrc121 = 98872, nSrcLost = 0, nSrcMulti = 39253, MnSrcMultiHits = 2.3172 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.151131/sub025.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.151131/sub025.1.mgh --o rh.white.K.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to rh.white.K.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.151131 za mrt 23 05:16:21 CET 2019 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc rh white.H fsaverage za mrt 23 05:16:21 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_preproc --s sub025 --hemi rh --meas white.H --target fsaverage --out rh.white.H.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.151242 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf Log file is rh.white.H.fsaverage.mris_preproc.log za mrt 23 05:16:21 CET 2019 setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf /opt/freesurfer/6.0/bin/mris_preproc --s sub025 --hemi rh --meas white.H --target fsaverage --out rh.white.H.fsaverage.mgh Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.151242 Src rh sphere.reg Trg rh sphere.reg --------------------------------------------------- #@# 1/1 sub025 za mrt 23 05:16:21 CET 2019 -------------- ----------------------- mri_surf2surf --srcsubject sub025 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.151242/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white.H --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --srcsubject sub025 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.151242/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white.H --sfmt curv --noreshape --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = sub025 srcval = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white.H srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.151242/sub025.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Loading source data Reading curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.white.H Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (138125) Reverse Loop had 25987 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 145879, nTrgMulti = 17963, MnTrgMultiHits = 2.4467 nSrc121 = 98872, nSrcLost = 0, nSrcMulti = 39253, MnSrcMultiHits = 2.3172 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.151242/sub025.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.151242/sub025.1.mgh --o rh.white.H.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to rh.white.H.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.151242 za mrt 23 05:16:27 CET 2019 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc rh jacobian_white fsaverage za mrt 23 05:16:27 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_preproc --s sub025 --hemi rh --meas jacobian_white --target fsaverage --out rh.jacobian_white.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.151353 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf Log file is rh.jacobian_white.fsaverage.mris_preproc.log za mrt 23 05:16:27 CET 2019 setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf /opt/freesurfer/6.0/bin/mris_preproc --s sub025 --hemi rh --meas jacobian_white --target fsaverage --out rh.jacobian_white.fsaverage.mgh Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.151353 Src rh sphere.reg Trg rh sphere.reg --------------------------------------------------- #@# 1/1 sub025 za mrt 23 05:16:27 CET 2019 -------------- ----------------------- mri_surf2surf --srcsubject sub025 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.151353/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.jacobian_white --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --srcsubject sub025 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.151353/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.jacobian_white --sfmt curv --noreshape --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = sub025 srcval = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.jacobian_white srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.151353/sub025.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Loading source data Reading curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.jacobian_white Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (138125) Reverse Loop had 25987 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 145879, nTrgMulti = 17963, MnTrgMultiHits = 2.4467 nSrc121 = 98872, nSrcLost = 0, nSrcMulti = 39253, MnSrcMultiHits = 2.3172 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.151353/sub025.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.151353/sub025.1.mgh --o rh.jacobian_white.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to rh.jacobian_white.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.151353 za mrt 23 05:16:33 CET 2019 mris_preproc done #-------------------------------------------- #@# Qdec Cache preproc rh w-g.pct.mgh fsaverage za mrt 23 05:16:33 CET 2019 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mris_preproc --s sub025 --hemi rh --meas w-g.pct.mgh --target fsaverage --out rh.w-g.pct.mgh.fsaverage.mgh nsubjects = 1 tmpdir is ./tmp.mris_preproc.151465 /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf Log file is rh.w-g.pct.mgh.fsaverage.mris_preproc.log za mrt 23 05:16:33 CET 2019 setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf /opt/freesurfer/6.0/bin/mris_preproc --s sub025 --hemi rh --meas w-g.pct.mgh --target fsaverage --out rh.w-g.pct.mgh.fsaverage.mgh Linux dccn-c051.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux $Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $ freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c tmpdir is ./tmp.mris_preproc.151465 Src rh sphere.reg Trg rh sphere.reg --------------------------------------------------- #@# 1/1 sub025 za mrt 23 05:16:33 CET 2019 -------------- ----------------------- mri_surf2surf --srcsubject sub025 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.151465/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.w-g.pct.mgh --sfmt curv --noreshape --cortex Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --srcsubject sub025 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval ./tmp.mris_preproc.151465/sub025.1.mgh --sval /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.w-g.pct.mgh --sfmt curv --noreshape --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = sub025 srcval = /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.w-g.pct.mgh srctype = curv trgsubject = fsaverage trgval = ./tmp.mris_preproc.151465/sub025.1.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.sphere.reg Loading source data Reading curvature file /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf/rh.w-g.pct.mgh Reading source subject label mask rh.cortex.label masking the input Reading target surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (138125) Reverse Loop had 25987 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 nTrg121 = 145879, nTrgMulti = 17963, MnTrgMultiHits = 2.4467 nSrc121 = 98872, nSrcLost = 0, nSrcMulti = 39253, MnSrcMultiHits = 2.3172 Reading target space mask label rh.cortex.label masking the input Saving target data Saving to ./tmp.mris_preproc.151465/sub025.1.mgh ----------------------- mri_concat ./tmp.mris_preproc.151465/sub025.1.mgh --o rh.w-g.pct.mgh.fsaverage.mgh ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Writing to rh.w-g.pct.mgh.fsaverage.mgh Cleaning up ----------------------- rm -r ./tmp.mris_preproc.151465 za mrt 23 05:16:39 CET 2019 mris_preproc done #-------------------------------------------- #@# Qdec Cache surf2surf lh thickness fwhm0 fsaverage za mrt 23 05:16:39 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm0.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.thickness.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.thickness.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label lh.cortex.label masking the input Saving target data Saving to lh.thickness.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh thickness fwhm5 fsaverage za mrt 23 05:16:41 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm5.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.thickness.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.thickness.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to lh.thickness.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh thickness fwhm10 fsaverage za mrt 23 05:16:46 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm10.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.thickness.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.thickness.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to lh.thickness.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh thickness fwhm15 fsaverage za mrt 23 05:16:51 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm15.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.thickness.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.thickness.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 165 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 165 Saving target data Saving to lh.thickness.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh thickness fwhm20 fsaverage za mrt 23 05:16:56 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm20.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.thickness.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.thickness.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to lh.thickness.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh thickness fwhm25 fsaverage za mrt 23 05:17:02 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.thickness.fsaverage.mgh --tval lh.thickness.fwhm25.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.thickness.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.thickness.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to lh.thickness.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh area fwhm0 fsaverage za mrt 23 05:17:08 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm0.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.area.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.area.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label lh.cortex.label masking the input Saving target data Saving to lh.area.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh area fwhm5 fsaverage za mrt 23 05:17:10 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm5.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.area.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.area.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to lh.area.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh area fwhm10 fsaverage za mrt 23 05:17:15 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm10.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.area.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.area.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to lh.area.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh area fwhm15 fsaverage za mrt 23 05:17:20 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm15.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.area.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.area.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 165 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 165 Saving target data Saving to lh.area.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh area fwhm20 fsaverage za mrt 23 05:17:25 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm20.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.area.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.area.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to lh.area.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh area fwhm25 fsaverage za mrt 23 05:17:30 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.area.fsaverage.mgh --tval lh.area.fwhm25.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.area.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.area.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to lh.area.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh area.pial fwhm0 fsaverage za mrt 23 05:17:36 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm0.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.area.pial.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.area.pial.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label lh.cortex.label masking the input Saving target data Saving to lh.area.pial.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh area.pial fwhm5 fsaverage za mrt 23 05:17:39 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm5.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.area.pial.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.area.pial.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to lh.area.pial.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh area.pial fwhm10 fsaverage za mrt 23 05:17:43 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm10.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.area.pial.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.area.pial.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to lh.area.pial.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh area.pial fwhm15 fsaverage za mrt 23 05:17:48 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm15.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.area.pial.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.area.pial.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 165 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 165 Saving target data Saving to lh.area.pial.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh area.pial fwhm20 fsaverage za mrt 23 05:17:54 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm20.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.area.pial.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.area.pial.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to lh.area.pial.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh area.pial fwhm25 fsaverage za mrt 23 05:17:59 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.area.pial.fsaverage.mgh --tval lh.area.pial.fwhm25.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.area.pial.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.area.pial.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to lh.area.pial.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh volume fwhm0 fsaverage za mrt 23 05:18:05 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.volume.fsaverage.mgh --tval lh.volume.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.volume.fsaverage.mgh --tval lh.volume.fwhm0.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.volume.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.volume.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label lh.cortex.label masking the input Saving target data Saving to lh.volume.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh volume fwhm5 fsaverage za mrt 23 05:18:07 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.volume.fsaverage.mgh --tval lh.volume.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.volume.fsaverage.mgh --tval lh.volume.fwhm5.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.volume.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.volume.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to lh.volume.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh volume fwhm10 fsaverage za mrt 23 05:18:12 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.volume.fsaverage.mgh --tval lh.volume.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.volume.fsaverage.mgh --tval lh.volume.fwhm10.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.volume.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.volume.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to lh.volume.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh volume fwhm15 fsaverage za mrt 23 05:18:17 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.volume.fsaverage.mgh --tval lh.volume.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.volume.fsaverage.mgh --tval lh.volume.fwhm15.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.volume.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.volume.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 165 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 165 Saving target data Saving to lh.volume.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh volume fwhm20 fsaverage za mrt 23 05:18:22 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.volume.fsaverage.mgh --tval lh.volume.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.volume.fsaverage.mgh --tval lh.volume.fwhm20.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.volume.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.volume.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to lh.volume.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh volume fwhm25 fsaverage za mrt 23 05:18:28 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.volume.fsaverage.mgh --tval lh.volume.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.volume.fsaverage.mgh --tval lh.volume.fwhm25.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.volume.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.volume.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to lh.volume.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh curv fwhm0 fsaverage za mrt 23 05:18:33 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.curv.fsaverage.mgh --tval lh.curv.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.curv.fsaverage.mgh --tval lh.curv.fwhm0.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.curv.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.curv.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label lh.cortex.label masking the input Saving target data Saving to lh.curv.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh curv fwhm5 fsaverage za mrt 23 05:18:36 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.curv.fsaverage.mgh --tval lh.curv.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.curv.fsaverage.mgh --tval lh.curv.fwhm5.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.curv.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.curv.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to lh.curv.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh curv fwhm10 fsaverage za mrt 23 05:18:41 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.curv.fsaverage.mgh --tval lh.curv.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.curv.fsaverage.mgh --tval lh.curv.fwhm10.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.curv.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.curv.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to lh.curv.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh curv fwhm15 fsaverage za mrt 23 05:18:46 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.curv.fsaverage.mgh --tval lh.curv.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.curv.fsaverage.mgh --tval lh.curv.fwhm15.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.curv.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.curv.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 165 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 165 Saving target data Saving to lh.curv.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh curv fwhm20 fsaverage za mrt 23 05:18:51 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.curv.fsaverage.mgh --tval lh.curv.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.curv.fsaverage.mgh --tval lh.curv.fwhm20.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.curv.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.curv.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to lh.curv.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh curv fwhm25 fsaverage za mrt 23 05:18:56 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.curv.fsaverage.mgh --tval lh.curv.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.curv.fsaverage.mgh --tval lh.curv.fwhm25.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.curv.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.curv.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to lh.curv.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh sulc fwhm0 fsaverage za mrt 23 05:19:02 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.sulc.fsaverage.mgh --tval lh.sulc.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.sulc.fsaverage.mgh --tval lh.sulc.fwhm0.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.sulc.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.sulc.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label lh.cortex.label masking the input Saving target data Saving to lh.sulc.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh sulc fwhm5 fsaverage za mrt 23 05:19:04 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.sulc.fsaverage.mgh --tval lh.sulc.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.sulc.fsaverage.mgh --tval lh.sulc.fwhm5.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.sulc.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.sulc.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to lh.sulc.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh sulc fwhm10 fsaverage za mrt 23 05:19:09 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.sulc.fsaverage.mgh --tval lh.sulc.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.sulc.fsaverage.mgh --tval lh.sulc.fwhm10.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.sulc.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.sulc.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to lh.sulc.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh sulc fwhm15 fsaverage za mrt 23 05:19:14 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.sulc.fsaverage.mgh --tval lh.sulc.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.sulc.fsaverage.mgh --tval lh.sulc.fwhm15.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.sulc.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.sulc.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 165 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 165 Saving target data Saving to lh.sulc.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh sulc fwhm20 fsaverage za mrt 23 05:19:19 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.sulc.fsaverage.mgh --tval lh.sulc.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.sulc.fsaverage.mgh --tval lh.sulc.fwhm20.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.sulc.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.sulc.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to lh.sulc.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh sulc fwhm25 fsaverage za mrt 23 05:19:25 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.sulc.fsaverage.mgh --tval lh.sulc.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.sulc.fsaverage.mgh --tval lh.sulc.fwhm25.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.sulc.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.sulc.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to lh.sulc.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh white.K fwhm0 fsaverage za mrt 23 05:19:31 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.white.K.fsaverage.mgh --tval lh.white.K.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.white.K.fsaverage.mgh --tval lh.white.K.fwhm0.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.white.K.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.white.K.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label lh.cortex.label masking the input Saving target data Saving to lh.white.K.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh white.K fwhm5 fsaverage za mrt 23 05:19:33 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.white.K.fsaverage.mgh --tval lh.white.K.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.white.K.fsaverage.mgh --tval lh.white.K.fwhm5.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.white.K.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.white.K.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to lh.white.K.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh white.K fwhm10 fsaverage za mrt 23 05:19:38 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.white.K.fsaverage.mgh --tval lh.white.K.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.white.K.fsaverage.mgh --tval lh.white.K.fwhm10.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.white.K.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.white.K.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to lh.white.K.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh white.K fwhm15 fsaverage za mrt 23 05:19:43 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.white.K.fsaverage.mgh --tval lh.white.K.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.white.K.fsaverage.mgh --tval lh.white.K.fwhm15.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.white.K.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.white.K.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 165 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 165 Saving target data Saving to lh.white.K.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh white.K fwhm20 fsaverage za mrt 23 05:19:48 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.white.K.fsaverage.mgh --tval lh.white.K.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.white.K.fsaverage.mgh --tval lh.white.K.fwhm20.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.white.K.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.white.K.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to lh.white.K.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh white.K fwhm25 fsaverage za mrt 23 05:19:53 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.white.K.fsaverage.mgh --tval lh.white.K.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.white.K.fsaverage.mgh --tval lh.white.K.fwhm25.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.white.K.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.white.K.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to lh.white.K.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh white.H fwhm0 fsaverage za mrt 23 05:19:59 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.white.H.fsaverage.mgh --tval lh.white.H.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.white.H.fsaverage.mgh --tval lh.white.H.fwhm0.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.white.H.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.white.H.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label lh.cortex.label masking the input Saving target data Saving to lh.white.H.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh white.H fwhm5 fsaverage za mrt 23 05:20:01 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.white.H.fsaverage.mgh --tval lh.white.H.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.white.H.fsaverage.mgh --tval lh.white.H.fwhm5.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.white.H.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.white.H.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to lh.white.H.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh white.H fwhm10 fsaverage za mrt 23 05:20:06 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.white.H.fsaverage.mgh --tval lh.white.H.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.white.H.fsaverage.mgh --tval lh.white.H.fwhm10.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.white.H.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.white.H.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to lh.white.H.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh white.H fwhm15 fsaverage za mrt 23 05:20:11 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.white.H.fsaverage.mgh --tval lh.white.H.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.white.H.fsaverage.mgh --tval lh.white.H.fwhm15.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.white.H.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.white.H.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 165 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 165 Saving target data Saving to lh.white.H.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh white.H fwhm20 fsaverage za mrt 23 05:20:16 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.white.H.fsaverage.mgh --tval lh.white.H.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.white.H.fsaverage.mgh --tval lh.white.H.fwhm20.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.white.H.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.white.H.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to lh.white.H.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh white.H fwhm25 fsaverage za mrt 23 05:20:22 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.white.H.fsaverage.mgh --tval lh.white.H.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.white.H.fsaverage.mgh --tval lh.white.H.fwhm25.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.white.H.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.white.H.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to lh.white.H.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh jacobian_white fwhm0 fsaverage za mrt 23 05:20:28 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.jacobian_white.fsaverage.mgh --tval lh.jacobian_white.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.jacobian_white.fsaverage.mgh --tval lh.jacobian_white.fwhm0.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.jacobian_white.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.jacobian_white.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label lh.cortex.label masking the input Saving target data Saving to lh.jacobian_white.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh jacobian_white fwhm5 fsaverage za mrt 23 05:20:30 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.jacobian_white.fsaverage.mgh --tval lh.jacobian_white.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.jacobian_white.fsaverage.mgh --tval lh.jacobian_white.fwhm5.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.jacobian_white.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.jacobian_white.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to lh.jacobian_white.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh jacobian_white fwhm10 fsaverage za mrt 23 05:20:35 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.jacobian_white.fsaverage.mgh --tval lh.jacobian_white.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.jacobian_white.fsaverage.mgh --tval lh.jacobian_white.fwhm10.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.jacobian_white.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.jacobian_white.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to lh.jacobian_white.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh jacobian_white fwhm15 fsaverage za mrt 23 05:20:40 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.jacobian_white.fsaverage.mgh --tval lh.jacobian_white.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.jacobian_white.fsaverage.mgh --tval lh.jacobian_white.fwhm15.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.jacobian_white.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.jacobian_white.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 165 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 165 Saving target data Saving to lh.jacobian_white.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh jacobian_white fwhm20 fsaverage za mrt 23 05:20:45 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.jacobian_white.fsaverage.mgh --tval lh.jacobian_white.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.jacobian_white.fsaverage.mgh --tval lh.jacobian_white.fwhm20.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.jacobian_white.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.jacobian_white.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to lh.jacobian_white.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh jacobian_white fwhm25 fsaverage za mrt 23 05:20:50 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.jacobian_white.fsaverage.mgh --tval lh.jacobian_white.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.jacobian_white.fsaverage.mgh --tval lh.jacobian_white.fwhm25.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.jacobian_white.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.jacobian_white.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to lh.jacobian_white.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh w-g.pct.mgh fwhm0 fsaverage za mrt 23 05:20:56 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.w-g.pct.mgh.fsaverage.mgh --tval lh.w-g.pct.mgh.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 0 --sval lh.w-g.pct.mgh.fsaverage.mgh --tval lh.w-g.pct.mgh.fwhm0.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.w-g.pct.mgh.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.w-g.pct.mgh.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label lh.cortex.label masking the input Saving target data Saving to lh.w-g.pct.mgh.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh w-g.pct.mgh fwhm5 fsaverage za mrt 23 05:20:59 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.w-g.pct.mgh.fsaverage.mgh --tval lh.w-g.pct.mgh.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 5 --sval lh.w-g.pct.mgh.fsaverage.mgh --tval lh.w-g.pct.mgh.fwhm5.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.w-g.pct.mgh.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.w-g.pct.mgh.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to lh.w-g.pct.mgh.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh w-g.pct.mgh fwhm10 fsaverage za mrt 23 05:21:03 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.w-g.pct.mgh.fsaverage.mgh --tval lh.w-g.pct.mgh.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 10 --sval lh.w-g.pct.mgh.fsaverage.mgh --tval lh.w-g.pct.mgh.fwhm10.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.w-g.pct.mgh.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.w-g.pct.mgh.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to lh.w-g.pct.mgh.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh w-g.pct.mgh fwhm15 fsaverage za mrt 23 05:21:08 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.w-g.pct.mgh.fsaverage.mgh --tval lh.w-g.pct.mgh.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 15 --sval lh.w-g.pct.mgh.fsaverage.mgh --tval lh.w-g.pct.mgh.fwhm15.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.w-g.pct.mgh.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.w-g.pct.mgh.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 165 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 165 Saving target data Saving to lh.w-g.pct.mgh.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh w-g.pct.mgh fwhm20 fsaverage za mrt 23 05:21:13 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.w-g.pct.mgh.fsaverage.mgh --tval lh.w-g.pct.mgh.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 20 --sval lh.w-g.pct.mgh.fsaverage.mgh --tval lh.w-g.pct.mgh.fwhm20.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.w-g.pct.mgh.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.w-g.pct.mgh.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to lh.w-g.pct.mgh.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf lh w-g.pct.mgh fwhm25 fsaverage za mrt 23 05:21:19 CET 2019 mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.w-g.pct.mgh.fsaverage.mgh --tval lh.w-g.pct.mgh.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi lh --fwhm 25 --sval lh.w-g.pct.mgh.fsaverage.mgh --tval lh.w-g.pct.mgh.fwhm25.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = lh.w-g.pct.mgh.fsaverage.mgh srctype = trgsubject = fsaverage trgval = lh.w-g.pct.mgh.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = lh.cortex.label label-trg = lh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/lh.sphere.reg Loading source data Reading source subject label mask lh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label lh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to lh.w-g.pct.mgh.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh thickness fwhm0 fsaverage za mrt 23 05:21:25 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.thickness.fsaverage.mgh --tval rh.thickness.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.thickness.fsaverage.mgh --tval rh.thickness.fwhm0.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.thickness.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.thickness.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label rh.cortex.label masking the input Saving target data Saving to rh.thickness.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh thickness fwhm5 fsaverage za mrt 23 05:21:27 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.thickness.fsaverage.mgh --tval rh.thickness.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.thickness.fsaverage.mgh --tval rh.thickness.fwhm5.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.thickness.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.thickness.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to rh.thickness.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh thickness fwhm10 fsaverage za mrt 23 05:21:32 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.thickness.fsaverage.mgh --tval rh.thickness.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.thickness.fsaverage.mgh --tval rh.thickness.fwhm10.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.thickness.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.thickness.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to rh.thickness.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh thickness fwhm15 fsaverage za mrt 23 05:21:37 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.thickness.fsaverage.mgh --tval rh.thickness.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.thickness.fsaverage.mgh --tval rh.thickness.fwhm15.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.thickness.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.thickness.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 166 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 166 Saving target data Saving to rh.thickness.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh thickness fwhm20 fsaverage za mrt 23 05:21:42 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.thickness.fsaverage.mgh --tval rh.thickness.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.thickness.fsaverage.mgh --tval rh.thickness.fwhm20.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.thickness.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.thickness.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to rh.thickness.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh thickness fwhm25 fsaverage za mrt 23 05:21:48 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.thickness.fsaverage.mgh --tval rh.thickness.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.thickness.fsaverage.mgh --tval rh.thickness.fwhm25.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.thickness.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.thickness.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to rh.thickness.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh area fwhm0 fsaverage za mrt 23 05:21:53 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.area.fsaverage.mgh --tval rh.area.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.area.fsaverage.mgh --tval rh.area.fwhm0.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.area.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.area.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label rh.cortex.label masking the input Saving target data Saving to rh.area.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh area fwhm5 fsaverage za mrt 23 05:21:56 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.area.fsaverage.mgh --tval rh.area.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.area.fsaverage.mgh --tval rh.area.fwhm5.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.area.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.area.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to rh.area.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh area fwhm10 fsaverage za mrt 23 05:22:01 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.area.fsaverage.mgh --tval rh.area.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.area.fsaverage.mgh --tval rh.area.fwhm10.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.area.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.area.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to rh.area.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh area fwhm15 fsaverage za mrt 23 05:22:06 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.area.fsaverage.mgh --tval rh.area.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.area.fsaverage.mgh --tval rh.area.fwhm15.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.area.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.area.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 166 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 166 Saving target data Saving to rh.area.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh area fwhm20 fsaverage za mrt 23 05:22:11 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.area.fsaverage.mgh --tval rh.area.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.area.fsaverage.mgh --tval rh.area.fwhm20.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.area.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.area.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to rh.area.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh area fwhm25 fsaverage za mrt 23 05:22:16 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.area.fsaverage.mgh --tval rh.area.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.area.fsaverage.mgh --tval rh.area.fwhm25.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.area.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.area.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to rh.area.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh area.pial fwhm0 fsaverage za mrt 23 05:22:22 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.area.pial.fsaverage.mgh --tval rh.area.pial.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.area.pial.fsaverage.mgh --tval rh.area.pial.fwhm0.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.area.pial.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.area.pial.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label rh.cortex.label masking the input Saving target data Saving to rh.area.pial.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh area.pial fwhm5 fsaverage za mrt 23 05:22:24 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.area.pial.fsaverage.mgh --tval rh.area.pial.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.area.pial.fsaverage.mgh --tval rh.area.pial.fwhm5.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.area.pial.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.area.pial.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to rh.area.pial.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh area.pial fwhm10 fsaverage za mrt 23 05:22:29 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.area.pial.fsaverage.mgh --tval rh.area.pial.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.area.pial.fsaverage.mgh --tval rh.area.pial.fwhm10.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.area.pial.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.area.pial.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to rh.area.pial.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh area.pial fwhm15 fsaverage za mrt 23 05:22:34 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.area.pial.fsaverage.mgh --tval rh.area.pial.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.area.pial.fsaverage.mgh --tval rh.area.pial.fwhm15.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.area.pial.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.area.pial.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 166 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 166 Saving target data Saving to rh.area.pial.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh area.pial fwhm20 fsaverage za mrt 23 05:22:39 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.area.pial.fsaverage.mgh --tval rh.area.pial.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.area.pial.fsaverage.mgh --tval rh.area.pial.fwhm20.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.area.pial.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.area.pial.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to rh.area.pial.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh area.pial fwhm25 fsaverage za mrt 23 05:22:45 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.area.pial.fsaverage.mgh --tval rh.area.pial.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.area.pial.fsaverage.mgh --tval rh.area.pial.fwhm25.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.area.pial.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.area.pial.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to rh.area.pial.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh volume fwhm0 fsaverage za mrt 23 05:22:51 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.volume.fsaverage.mgh --tval rh.volume.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.volume.fsaverage.mgh --tval rh.volume.fwhm0.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.volume.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.volume.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label rh.cortex.label masking the input Saving target data Saving to rh.volume.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh volume fwhm5 fsaverage za mrt 23 05:22:53 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.volume.fsaverage.mgh --tval rh.volume.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.volume.fsaverage.mgh --tval rh.volume.fwhm5.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.volume.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.volume.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to rh.volume.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh volume fwhm10 fsaverage za mrt 23 05:22:58 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.volume.fsaverage.mgh --tval rh.volume.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.volume.fsaverage.mgh --tval rh.volume.fwhm10.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.volume.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.volume.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to rh.volume.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh volume fwhm15 fsaverage za mrt 23 05:23:02 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.volume.fsaverage.mgh --tval rh.volume.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.volume.fsaverage.mgh --tval rh.volume.fwhm15.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.volume.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.volume.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 166 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 166 Saving target data Saving to rh.volume.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh volume fwhm20 fsaverage za mrt 23 05:23:08 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.volume.fsaverage.mgh --tval rh.volume.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.volume.fsaverage.mgh --tval rh.volume.fwhm20.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.volume.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.volume.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to rh.volume.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh volume fwhm25 fsaverage za mrt 23 05:23:13 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.volume.fsaverage.mgh --tval rh.volume.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.volume.fsaverage.mgh --tval rh.volume.fwhm25.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.volume.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.volume.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to rh.volume.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh curv fwhm0 fsaverage za mrt 23 05:23:19 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.curv.fsaverage.mgh --tval rh.curv.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.curv.fsaverage.mgh --tval rh.curv.fwhm0.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.curv.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.curv.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label rh.cortex.label masking the input Saving target data Saving to rh.curv.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh curv fwhm5 fsaverage za mrt 23 05:23:21 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.curv.fsaverage.mgh --tval rh.curv.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.curv.fsaverage.mgh --tval rh.curv.fwhm5.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.curv.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.curv.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to rh.curv.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh curv fwhm10 fsaverage za mrt 23 05:23:26 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.curv.fsaverage.mgh --tval rh.curv.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.curv.fsaverage.mgh --tval rh.curv.fwhm10.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.curv.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.curv.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to rh.curv.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh curv fwhm15 fsaverage za mrt 23 05:23:31 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.curv.fsaverage.mgh --tval rh.curv.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.curv.fsaverage.mgh --tval rh.curv.fwhm15.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.curv.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.curv.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 166 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 166 Saving target data Saving to rh.curv.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh curv fwhm20 fsaverage za mrt 23 05:23:36 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.curv.fsaverage.mgh --tval rh.curv.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.curv.fsaverage.mgh --tval rh.curv.fwhm20.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.curv.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.curv.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to rh.curv.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh curv fwhm25 fsaverage za mrt 23 05:23:42 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.curv.fsaverage.mgh --tval rh.curv.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.curv.fsaverage.mgh --tval rh.curv.fwhm25.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.curv.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.curv.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to rh.curv.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh sulc fwhm0 fsaverage za mrt 23 05:23:48 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.sulc.fsaverage.mgh --tval rh.sulc.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.sulc.fsaverage.mgh --tval rh.sulc.fwhm0.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.sulc.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.sulc.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label rh.cortex.label masking the input Saving target data Saving to rh.sulc.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh sulc fwhm5 fsaverage za mrt 23 05:23:50 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.sulc.fsaverage.mgh --tval rh.sulc.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.sulc.fsaverage.mgh --tval rh.sulc.fwhm5.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.sulc.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.sulc.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to rh.sulc.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh sulc fwhm10 fsaverage za mrt 23 05:23:55 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.sulc.fsaverage.mgh --tval rh.sulc.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.sulc.fsaverage.mgh --tval rh.sulc.fwhm10.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.sulc.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.sulc.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to rh.sulc.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh sulc fwhm15 fsaverage za mrt 23 05:24:00 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.sulc.fsaverage.mgh --tval rh.sulc.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.sulc.fsaverage.mgh --tval rh.sulc.fwhm15.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.sulc.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.sulc.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 166 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 166 Saving target data Saving to rh.sulc.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh sulc fwhm20 fsaverage za mrt 23 05:24:05 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.sulc.fsaverage.mgh --tval rh.sulc.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.sulc.fsaverage.mgh --tval rh.sulc.fwhm20.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.sulc.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.sulc.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to rh.sulc.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh sulc fwhm25 fsaverage za mrt 23 05:24:10 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.sulc.fsaverage.mgh --tval rh.sulc.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.sulc.fsaverage.mgh --tval rh.sulc.fwhm25.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.sulc.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.sulc.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to rh.sulc.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh white.K fwhm0 fsaverage za mrt 23 05:24:16 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.white.K.fsaverage.mgh --tval rh.white.K.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.white.K.fsaverage.mgh --tval rh.white.K.fwhm0.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.white.K.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.white.K.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label rh.cortex.label masking the input Saving target data Saving to rh.white.K.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh white.K fwhm5 fsaverage za mrt 23 05:24:19 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.white.K.fsaverage.mgh --tval rh.white.K.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.white.K.fsaverage.mgh --tval rh.white.K.fwhm5.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.white.K.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.white.K.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to rh.white.K.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh white.K fwhm10 fsaverage za mrt 23 05:24:23 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.white.K.fsaverage.mgh --tval rh.white.K.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.white.K.fsaverage.mgh --tval rh.white.K.fwhm10.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.white.K.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.white.K.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to rh.white.K.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh white.K fwhm15 fsaverage za mrt 23 05:24:28 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.white.K.fsaverage.mgh --tval rh.white.K.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.white.K.fsaverage.mgh --tval rh.white.K.fwhm15.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.white.K.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.white.K.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 166 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 166 Saving target data Saving to rh.white.K.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh white.K fwhm20 fsaverage za mrt 23 05:24:34 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.white.K.fsaverage.mgh --tval rh.white.K.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.white.K.fsaverage.mgh --tval rh.white.K.fwhm20.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.white.K.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.white.K.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to rh.white.K.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh white.K fwhm25 fsaverage za mrt 23 05:24:39 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.white.K.fsaverage.mgh --tval rh.white.K.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.white.K.fsaverage.mgh --tval rh.white.K.fwhm25.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.white.K.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.white.K.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to rh.white.K.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh white.H fwhm0 fsaverage za mrt 23 05:24:45 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.white.H.fsaverage.mgh --tval rh.white.H.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.white.H.fsaverage.mgh --tval rh.white.H.fwhm0.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.white.H.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.white.H.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label rh.cortex.label masking the input Saving target data Saving to rh.white.H.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh white.H fwhm5 fsaverage za mrt 23 05:24:47 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.white.H.fsaverage.mgh --tval rh.white.H.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.white.H.fsaverage.mgh --tval rh.white.H.fwhm5.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.white.H.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.white.H.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to rh.white.H.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh white.H fwhm10 fsaverage za mrt 23 05:24:52 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.white.H.fsaverage.mgh --tval rh.white.H.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.white.H.fsaverage.mgh --tval rh.white.H.fwhm10.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.white.H.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.white.H.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to rh.white.H.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh white.H fwhm15 fsaverage za mrt 23 05:24:57 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.white.H.fsaverage.mgh --tval rh.white.H.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.white.H.fsaverage.mgh --tval rh.white.H.fwhm15.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.white.H.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.white.H.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 166 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 166 Saving target data Saving to rh.white.H.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh white.H fwhm20 fsaverage za mrt 23 05:25:02 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.white.H.fsaverage.mgh --tval rh.white.H.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.white.H.fsaverage.mgh --tval rh.white.H.fwhm20.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.white.H.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.white.H.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to rh.white.H.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh white.H fwhm25 fsaverage za mrt 23 05:25:08 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.white.H.fsaverage.mgh --tval rh.white.H.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.white.H.fsaverage.mgh --tval rh.white.H.fwhm25.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.white.H.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.white.H.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to rh.white.H.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh jacobian_white fwhm0 fsaverage za mrt 23 05:25:13 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.jacobian_white.fsaverage.mgh --tval rh.jacobian_white.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.jacobian_white.fsaverage.mgh --tval rh.jacobian_white.fwhm0.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.jacobian_white.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.jacobian_white.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label rh.cortex.label masking the input Saving target data Saving to rh.jacobian_white.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh jacobian_white fwhm5 fsaverage za mrt 23 05:25:16 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.jacobian_white.fsaverage.mgh --tval rh.jacobian_white.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.jacobian_white.fsaverage.mgh --tval rh.jacobian_white.fwhm5.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.jacobian_white.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.jacobian_white.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to rh.jacobian_white.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh jacobian_white fwhm10 fsaverage za mrt 23 05:25:21 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.jacobian_white.fsaverage.mgh --tval rh.jacobian_white.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.jacobian_white.fsaverage.mgh --tval rh.jacobian_white.fwhm10.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.jacobian_white.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.jacobian_white.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to rh.jacobian_white.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh jacobian_white fwhm15 fsaverage za mrt 23 05:25:26 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.jacobian_white.fsaverage.mgh --tval rh.jacobian_white.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.jacobian_white.fsaverage.mgh --tval rh.jacobian_white.fwhm15.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.jacobian_white.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.jacobian_white.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 166 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 166 Saving target data Saving to rh.jacobian_white.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh jacobian_white fwhm20 fsaverage za mrt 23 05:25:31 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.jacobian_white.fsaverage.mgh --tval rh.jacobian_white.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.jacobian_white.fsaverage.mgh --tval rh.jacobian_white.fwhm20.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.jacobian_white.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.jacobian_white.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to rh.jacobian_white.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh jacobian_white fwhm25 fsaverage za mrt 23 05:25:36 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.jacobian_white.fsaverage.mgh --tval rh.jacobian_white.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.jacobian_white.fsaverage.mgh --tval rh.jacobian_white.fwhm25.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.jacobian_white.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.jacobian_white.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to rh.jacobian_white.fwhm25.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh w-g.pct.mgh fwhm0 fsaverage za mrt 23 05:25:42 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.w-g.pct.mgh.fsaverage.mgh --tval rh.w-g.pct.mgh.fwhm0.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 0 --sval rh.w-g.pct.mgh.fsaverage.mgh --tval rh.w-g.pct.mgh.fwhm0.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.w-g.pct.mgh.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.w-g.pct.mgh.fwhm0.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Reading target space mask label rh.cortex.label masking the input Saving target data Saving to rh.w-g.pct.mgh.fwhm0.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh w-g.pct.mgh fwhm5 fsaverage za mrt 23 05:25:45 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.w-g.pct.mgh.fsaverage.mgh --tval rh.w-g.pct.mgh.fwhm5.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 5 --sval rh.w-g.pct.mgh.fsaverage.mgh --tval rh.w-g.pct.mgh.fwhm5.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.w-g.pct.mgh.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.w-g.pct.mgh.fwhm5.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 5 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 5.000000, std = 2.123305, with 18 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 18 Saving target data Saving to rh.w-g.pct.mgh.fwhm5.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh w-g.pct.mgh fwhm10 fsaverage za mrt 23 05:25:49 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.w-g.pct.mgh.fsaverage.mgh --tval rh.w-g.pct.mgh.fwhm10.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 10 --sval rh.w-g.pct.mgh.fsaverage.mgh --tval rh.w-g.pct.mgh.fwhm10.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.w-g.pct.mgh.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.w-g.pct.mgh.fwhm10.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 10 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 10.000000, std = 4.246609, with 74 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 74 Saving target data Saving to rh.w-g.pct.mgh.fwhm10.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh w-g.pct.mgh fwhm15 fsaverage za mrt 23 05:25:54 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.w-g.pct.mgh.fsaverage.mgh --tval rh.w-g.pct.mgh.fwhm15.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 15 --sval rh.w-g.pct.mgh.fsaverage.mgh --tval rh.w-g.pct.mgh.fwhm15.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.w-g.pct.mgh.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.w-g.pct.mgh.fwhm15.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 15.000000, std = 6.369914, with 166 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 166 Saving target data Saving to rh.w-g.pct.mgh.fwhm15.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh w-g.pct.mgh fwhm20 fsaverage za mrt 23 05:25:59 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.w-g.pct.mgh.fsaverage.mgh --tval rh.w-g.pct.mgh.fwhm20.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 20 --sval rh.w-g.pct.mgh.fsaverage.mgh --tval rh.w-g.pct.mgh.fwhm20.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.w-g.pct.mgh.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.w-g.pct.mgh.fwhm20.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 20 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 20.000000, std = 8.493218, with 294 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 294 Saving target data Saving to rh.w-g.pct.mgh.fwhm20.fsaverage.mgh #-------------------------------------------- #@# Qdec Cache surf2surf rh w-g.pct.mgh fwhm25 fsaverage za mrt 23 05:26:05 CET 2019 mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.w-g.pct.mgh.fsaverage.mgh --tval rh.w-g.pct.mgh.fwhm25.fsaverage.mgh --cortex $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ setenv SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer cd /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/sub025/surf mri_surf2surf --prune --s fsaverage --hemi rh --fwhm 25 --sval rh.w-g.pct.mgh.fsaverage.mgh --tval rh.w-g.pct.mgh.fwhm25.fsaverage.mgh --cortex sysname Linux hostname dccn-c051.dccn.nl machine x86_64 user ilecam srcsubject = fsaverage srcval = rh.w-g.pct.mgh.fsaverage.mgh srctype = trgsubject = fsaverage trgval = rh.w-g.pct.mgh.fwhm25.fsaverage.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 25 label-src = rh.cortex.label label-trg = rh.cortex.label OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/fsaverage/surf/rh.sphere.reg Loading source data Reading source subject label mask rh.cortex.label masking the input INFO: trgsubject = srcsubject Approximating gaussian smoothing of target with fwhm = 25.000000, std = 10.616523, with 460 iterations of nearest-neighbor smoothing Reading target space mask label rh.cortex.label Pruning output smoothing mask by thr: 1.175494e-38 NN smoothing output with n = 460 Saving target data Saving to rh.w-g.pct.mgh.fwhm25.fsaverage.mgh Started at vr mrt 22 17:10:14 CET 2019 Ended at za mrt 23 05:26:11 CET 2019 #@#%# recon-all-run-time-hours 12,266 recon-all -s sub025 finished without error at za mrt 23 05:26:11 CET 2019