This is a bug. I've attached a new version. You can copy it to $FREESURFER/python/scripts/mri_sclimbic_seg
doug


On 9/23/2022 5:29 PM, bar gen wrote:

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Hi all,
I am receiving this error when trying to run sclimbic module. 

 mri_sclimbic_seg --i /Users/mdbargen/Documents/control-T1  --o /Users/mdbargen/Documents/control-limbic  --conform 

Segmenting image 1/68

Loaded input image from /Users/barisgenc/Documents/Kontrol-T1/Acar_Ebru-T1.nii.gz

Traceback (most recent call last):

  File "/Applications/freesurfer/7.3.2/python/scripts/mri_sclimbic_seg", line 1048, in <module>

    main()

  File "/Applications/freesurfer/7.3.2/python/scripts/mri_sclimbic_seg", line 312, in main

    segmenter.process_files(**params)

  File "/Applications/freesurfer/7.3.2/python/scripts/mri_sclimbic_seg", line 577, in process_files

    post, seg, vox_counts, volumes, mean_probs = self.segment(image)

  File "/Applications/freesurfer/7.3.2/python/scripts/mri_sclimbic_seg", line 497, in segment

    conformed = self.preprocess(image)

  File "/Applications/freesurfer/7.3.2/python/scripts/mri_sclimbic_seg", line 469, in preprocess

    print('The input image has resolution (%4.2f,%4.2f,%4.2f) mm, but 1mm-isotropic input is required.\n'

TypeError: only size-1 arrays can be converted to Python scalars

How can i solve this?


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