---

De: Bruce Fischl <fischl@nmr.mgh.harvard.edu>
Para: Kelly Silva <kcasilva@yahoo.com.br>
Cc: freesurfer@nmr.mgh.harvard.edu
Enviadas: Quinta-feira, 8 de Janeiro de 2009 16:07:41
Assunto: Re: Res: Res: [Freesurfer] Subcortical Label

1)

tkmedit $subject norm.mgz -segmentation aseg.mgz

2)

there are editing tools in tkmedit you can use.

3)

you'll need to regenerate the aseg.stats file and the aparc+aseg stuff, but
if the edits aren't near cortex you don't necessarily have to. Unless you
are really trying to save computer time you might as well though

On Thu, 8 Jan 2009, Kelly
Silva wrote:

>
>
> 1) I need the command line to visualize the segmentation of subcortical structures, because I want to see if the segmentation of thalamus is good.
> 2) If the segmentation is not good, how can I make changes manually?
> 3) After the changes, is it necessary to run Recon2 and Recon3 again???                                       Thanks, Kelly
>
>
> ________________________________
> De: Bruce Fischl <fischl@nmr.mgh.harvard.edu>
> Para: Kelly Silva <kcasilva@yahoo.com.br>
> Cc: freesurfer@nmr.mgh.harvard.edu
> Enviadas: Quinta-feira, 8 de Janeiro de 2009 15:31:11
> Assunto: Re: Res: [Freesurfer] Subcortical Label
>
> sorry, you mean in our .label format? I'm still not sure I understand.
>
> On Thu, 8 Jan 2009, Kelly Silva wrote:
>
>> Hi,
>>   I need that the ROI appears like a label, for example, together with the parcelations of aparc.a2005s.stats/aparc.stats, becaus I have a program that reads the labels from aparc.stats.
>>                         Thanks, Kelly
>>
>>
>>
>>
>> ________________________________
>> De: Bruce Fischl <fischl@nmr.mgh.harvard.edu>
>> Para: Kelly Silva <kcasilva@yahoo.com.br>
>> Cc: freesurfer@nmr.mgh.harvard.edu
>> Enviadas: Quinta-feira, 8 de Janeiro de 2009 15:17:52
>> Assunto: Re: [Freesurfer] Subcortical Label
>>
>> sure, what format would you like the ROI in?
>> On Thu, 8 Jan 2009, Kelly Silva
>> wrote:
>>
>>> Hello,
>>>    I´d like to know if there is some way to create a ROI-label of a subcortical structure. If there is a way, please tell me how to do.
>>>                                                                  Thanks, Kelly
>>>
>>>
>>>       Veja quais são os assuntos do momento no Yahoo! +Buscados
>>> http://br.maisbuscados.yahoo.com
>>
>>
>>       Veja quais são os assuntos do momento no Yahoo! +Buscados
>> http://br.maisbuscados.yahoo.com
>
>
>      Veja quais são os assuntos do momento no Yahoo! +Buscados
> http://br.maisbuscados.yahoo.com