Hi Zeke,
sorry, I did it again and got the following output:
/opt/x11/lib/libx11.dylib:
/usr/X11/lib/libX11.6.dylib (compatibility version 9.0.0, current version 9.0.0)
/usr/X11/lib/libXau.6.dylib (compatibility version 7.0.0, current version 7.0.0)
/usr/X11/lib/libXdmcp.6.dylib (compatibility version 7.0.0, current version 7.0.0)
/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 125.2.11)
What should I do now. XQuartz is already installed. I did not have any problems using Freesurfer until I installed Maverick:-)
Thanks!
DH
> Date: Fri, 24 Jan 2014 17:07:08 -0500
> From: zkaufman@nmr.mgh.harvard.edu
> To: dusanhirjak@hotmail.com; freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] Freesurfer, Matlab and Maverick
>
> Hello Dusan,
>
> Are you sure you typed the entire command? Because your system is
> supposed ouput information about that particular file. Instead you got
> the help information, which is output when you only type "otool" instead
> of ""otool -L /opt/X11/lib/libX11.dylib"
>
> Also, did you install XQuartz?
>
> -Zeke
>
>
>
> On 01/24/2014 04:35 PM, Dusan Hirjak wrote:
> > Hallo Zeke,
> >
> > I did it as you told me and typed "otool -L /opt/X11/lib/libX11.dylib"
> > in the command line, and got the following output:
> >
> > Usage: /Library/Developer/CommandLineTools/usr/bin/otool [-arch
> > arch_type] [-fahlLDtdorSTMRIHGvVcXmqQj] [-mcpu=arg] <object file> ...
> > -f print the fat headers
> > -a print the archive header
> > -h print the mach header
> > -l print the load commands
> > -L print shared libraries used
> > -D print shared library id name
> > -t print the text section (disassemble with -v)
> > -p <routine name> start dissassemble from routine name
> > -s <segname> <sectname> print contents of section
> > -d print the data section
> > -o print the Objective-C segment
> > -r print the relocation entries
> > -S print the table of contents of a library
> > -T print the table of contents of a dynamic shared library
> > -M print the module table of a dynamic shared library
> > -R print the reference table of a dynamic shared library
> > -I print the indirect symbol table
> > -H print the two-level hints table
> > -G print the data in code table
> > -v print verbosely (symbolically) when possible
> > -V print disassembled operands symbolically
> > -c print argument strings of a core file
> > -X print no leading addresses or headers
> > -m don't use archive(member) syntax
> > -B force Thumb disassembly (ARM objects only)
> > -q use llvm's disassembler (the default)
> > -Q use otool(1)'s disassembler
> > -mcpu=arg use `arg' as the cpu for disassembly
> > -j print opcode bytes (ARM64 objects only)
> >
> >
> > What should I do next to be able to use Freesurfer and Matlab on Maverick???
> >
> > Many thanks!!!
> >
> > DH
> >
> >
> >
> >
> >
> >
> >
> >
> >
> > > Date: Fri, 24 Jan 2014 11:35:17 -0500
> > > From: zkaufman@nmr.mgh.harvard.edu
> > > To: dusanhirjak@hotmail.com; freesurfer@nmr.mgh.harvard.edu
> > > Subject: Re: [Freesurfer] Freesurfer, Matlab and Maverick
> > >
> > > Hello Dusan,
> > >
> > > When you say you installed "X11 (2.7.5)" does that mean you've installed
> > > the latest version of XQuartz (http://xquartz.macosforge.org/landing/)?
> > > If not, please do that first.
> > >
> > > If you installed XQuartz, than can you please type the following on the
> > > command line and provide me with the output:
> > >
> > > "otool -L /opt/X11/lib/libX11.dylib"
> > >
> > > -Zeke
> > >
> > >
> > >
> > > On 01/24/2014 11:02 AM, Dusan Hirjak wrote:
> > > > Dear experts,
> > > >
> > > > it seems that after the new apple update "Maverick" Matlab can not get
> > > > access to Freesurfer. I already added the "recommended lines" from the
> > > > homepage to matlab startup-file, but it is still not working. Im trying
> > > > to estimate the local gyrification index. However when I type
> > "recon-all
> > > > -lgi -s G01"
> > > > Im getting the following message:
> > > >
> > > > *dyld: Library not loaded: /opt/X11/lib/libX11.6.dylib*
> > > >
> > > > * Referenced from: /Users/dhirjak/freesurfer/bin/qdec.bin*
> > > >
> > > > * Reason: Incompatible library version: qdec.bin requires version
> > > > 10.0.0 or later, but libX11.6.dylib provides version 9.0.0*
> > > >
> > > > *Trace/BPT trap*
> > > >
> > > >
> > > > What is the problem with X11 and its library version, I already
> > > > installed the latest version of X11 (2.7.5), but it is still not
> > working.
> > > >
> > > >
> > > > Can some help me???
> > > >
> > > >
> > > > Many thanks!!!
> > > >
> > > >
> > > > DH
> > > >
> > > >
> > > >
> > > >
> > > >
> > > > _______________________________________________
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> > > > Freesurfer@nmr.mgh.harvard.edu
> > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > > >
> > >
> > >
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