Hi Zeke,

I’m seeing the same issue (running xquartz 2.7.9 on MacBooPro10,1). XQuartz 2.7.8 works, 2.7.9 breaks both freeview, tkmedit, qdec

I’ve also submitted bug report to xquartz, https://bugs.freedesktop.org/show_bug.cgi?id=96849

The errors thrown are:


rcwelsh@mnemosyne:/home/Software/fs_install/bin$ qdec
X Error of failed request:  BadValue (integer parameter out of range for operation)
  Major opcode of failed request:  150 (GLX)
  Minor opcode of failed request:  3 (X_GLXCreateContext)
  Value in failed request:  0x0
  Serial number of failed request:  1184
  Current serial number in output stream:  1185


rcwelsh@mnemosyne:/home/Software/fs_install/bin$ tkmedit
X Error of failed request:  GLXBadContext
  Major opcode of failed request:  150 (GLX)
  Minor opcode of failed request:  6 (X_GLXIsDirect)
  Serial number of failed request:  26
  Current serial number in output stream:  25


rcwelsh@mnemosyne:/home/Software/fs_install/bin$ freeview
X Error: BadValue (integer parameter out of range for operation) 2
  Extension:    150 (Uknown extension)
  Minor opcode: 3 (Unknown request)
  Resource id:  0x0
X Error: GLXBadContext 160
  Extension:    150 (Uknown extension)
  Minor opcode: 5 (Unknown request)
  Resource id:  0x18001d8
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSC ERROR: or try http://valgrind.org on linux or man libgmalloc on Apple to find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run 
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Signal received!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 2.3.3, Patch 13, Thu May 15 17:29:26 CDT 2008 HG revision: 4466c6289a0922df26e20626fd4a0b4dd03c8124
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Unknown Name on a linux-gnu named mnemosyne by rcwelsh Thu Jul  7 14:56:12 2016
[0]PETSC ERROR: Libraries linked from /autofs/space/lyon_006/pubsw/Linux2-2.3-x86_64/packages/petsc/2.3.3-p13/src/petsc-2.3.3-p13/lib/linux-gnu-c-opt
[0]PETSC ERROR: Configure run at Tue Aug 10 15:01:59 2010
[0]PETSC ERROR: Configure options --with-debugging=no --with-cc=gcc --with-fc=g77 --download-f-blas-lapack=0 --download-mpich=1 --with-mpi=1 --with-x=0 --with-gnu-copyright-code=0 --with-shared=0 COPTFLAGS=-O3 CXXOPTFLAGS=-O3 FOPTFLAGS=-O3
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file
[unset]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
X Error: GLXBadContextTag 164
  Extension:    150 (Uknown extension)
  Minor opcode: 1 (Unknown request)
  Resource id:  0x960005


-Robert

------------------------------------------------------------------------------------------------------------------------------------------------------

Hello Kate,

Thanks for the information. We have seen similar behavior with previous 
XQuartz releases in the past as well. This tends to "freeze" certain 
vesion of OSX with certain versions of XQuartz. I will take a closer 
look but this is usually something that we have to deal with.
-Zeke

On 06/20/2016 08:34 PM, Kate Mills wrote:
> Hi All,
>
> My lab is having difficulty loading the freeview gui after updating to
> the latest version of XQuartz (2.7.9). We were wondering if others have
> experienced this issue? We have reverted by to XQuartz 2.7.8 on our
> machines for now. In case relevant, this errors seems to span Mac OS
> versions.
>
> Thank you!
>
> Kate
>
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
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>
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----------------------------------------
Robert C. Welsh, Ph.D.
Associate Professor
Department of Radiology
Department of Psychiatry
University of Michigan
rcwelsh@umich.edu

Associate Director, VA-fMRI Research, VA Ann Arbor