# FreeSurfer SUBJECTS_DIR
# T1 images and FreeSurfer segmentations are expected to be found here
#
set SUBJECTS_DIR=$TUTORIAL_DATA/4220


# Output directory where trac-all results will be saved
# Default: Same as SUBJECTS_DIR
#
set dtroot = $TUTORIAL_DATA/outputs

# Subject IDs
#
set subjlist = 4220

# Input diffusion DICOMs
# If original DICOMs don't exist, these can be in other image format
# but then the gradient table and b-value table must be specified (see below)
#
set dcmroot = $TUTORIAL_DATA/4220/4220dti/memoria/DTI

set dcmlist = $TUTORIAL_DATA/4220/4220dti/memoria/DTI/IM-0001-0033.dcm

set doeddy = 0

set dorotbvecs = 0

set usemaskanat = 1

set thrbet = 0.3

set doregflt = 1

set doregbbr = 0

set doregmni = 1

set doregcvs = 0

set pathlist = lh.cst_AS rh.cst_AS \
                 lh.ilf_AS rh.ilf_AS \
                 lh.unc_AS rh.unc_AS \
                 fmajor_PP fminor_PP \
                 lh.atr_PP rh.atr_PP \
                 lh.cab_PP rh.cab_PP \
                 lh.ccg_PP rh.ccg_PP \
                 lh.slfp_PP rh.slfp_PP \
                 lh.slft_PP rh.slft_PP

set ncpts = 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5