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Files are attached.

I also am running into the same issue when trying to load to surface overlays and customize them (within the same hemisphere):

freeview -f ${SUBJECTS_DIR}/${SUBJECT}/surf/rh.inflated:curvature_method=binary:overlay=rh.phase.mgz:overlay_custom=1.57,153,0,0,2.20,255,0,0,2.83,255,255,0,3.46,0,255,255,4.08,0,0,255,4.71,0,0,102:overlay_threshold=1.57,4.71:overlay_color='clearlower','clearhigher',colorscale:overlay_mask=${SUBJECTS_DIR}/${SUBJECT}/label/rh.ve_20pct.thresh.label:overlay=rh.eccen.mgz:overlay_threshold=.001,20:overlay_color=colorwheel:overlay_mask=${SUBJECTS_DIR}/${SUBJECT}/label/rh.ve_20pct.thresh.label

Both overlays load onto only one overlay surface (the first one in this case).

Thanks!
Jewelia
From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Wang, Ruopeng <RWANG4@mgh.harvard.edu>
Sent: Monday, May 1, 2023 8:00 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] freeview rh and lh overlay_mask files both showing in the lh hemisphere
 

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Would it be possible to send us the surface and the overlay and mask files so I can replicate the issue?

Ruopeng

On Apr 16, 2023, at 9:18 PM, Jewelia Karina Yao <jeweliayao@stanford.edu> wrote:

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Hi FreeSurfer Developers,

I'm trying to use freeview to load the rh and lh inflated surfaces together with overlays and overlay masks. I'm able to this separately and successfully for each hemisphere, but when I try to load the hemispheres together, both of the overlay_mask files show up on the left hemisphere and not the right hemisphere. The following is the command I'm using:

freeview -f ${SUBJECTS_DIR}/${SUBJECT}/surf/rh.inflated:curvature_method=binary:overlay=rh.phase.mgz:overlay_custom=1.57,153,0,0,2.20,255,0,0,2.83,255,255,0,3.46,0,255,255,4.08,0,0,255,4.71,0,0,102:overlay_threshold=1.57,4.71:overlay_color='clearlower','clearhigher',colorscale:overlay_mask=${SUBJECTS_DIR}/${SUBJECT}/label/rh.ve_20pct.thresh.label \
-f ${SUBJECTS_DIR}/${SUBJECT}/surf/lh.inflated:curvature_method=binary:overlay=lh.phase.mgz:overlay_custom=1.57,153,0,0,2.20,255,0,0,2.83,255,255,0,3.46,0,255,255,4.08,0,0,255,4.71,0,0,102:overlay_threshold=1.57,4.71:overlay_color='clearlower','clearhigher',colorscale:overlay_mask=${SUBJECTS_DIR}/${SUBJECT}/label/lh.ve_20pct.thresh.label

I've tried running this with 7.1.1 and 7.2.0 on Mac 10.15.7 and Linux w/Ubuntu 22.04 but still run into the same issue. 

Let me know if there's something I'm missing or if there's a better way to troubleshoot.

Thanks!
Jewelia
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