Dear all,

I have created a Docker image with Freesurfer distribution (and all required dependencies).

Features:

Only requires Docker to run (works on Linux, Mac and Windows - does not suffer from the VirtualBox bug)
understands BIDS formatted datasets
performs recon-all on all subjects
allows you to run each subject independently (and potentially in parallel)
automatically performs longitudinal analysis when multiple sessions are detected
creates custom group level template for your study
can be easily converted to a Singularity image using docker2singularity tool and run on your local HPC/cluster

Please let me know what do you think!

Best,

Chris