Dear FreeSurfers,

I am extracting thickness values through the aparcstats2table command line.

Everything works just fine for --hemi lh using the --skip flag.

However, when it comes to the right hemisphere I get

SUBJECTS_DIR : /usr/local/freesurfer/subjects
Parsing the .stats files
Traceback (most recent call last):
File "/usr/local/freesurfer/bin/aparcstats2table", line 321, in <module>
parc_measure_map = parsed.parse(options.meas)
File "/usr/local/freesurfer/bin/fsutils.py", line 194, in parse
parcid = strlist[0]
IndexError: list index out of range

I find it weird given that I am extracting thickness values for the same subjects.

Can anybody help me find out what the problem is?

Thank you in advance,

Pietro

Pietro De Rossi, MD

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Sapienza Università di Roma, Facoltà di Medicina e Psicologia, Dipartimento NESMOS (Neuroscienze, Salute Mentale, Organi di Senso), Ospedale Sant'Andrea, Via di Grottarossa 1035-1039, 00189 Roma

NESMOS Department (Neurosciences, Mental Health and Sensory Functions), School of Medicine and Psychology, Sapienza University, Sant’Andrea Hospital, Via di Grottarossa 1035-1039, 00189 Rome, Italy

Neurobehavioral Clinical Research Section, Social and Behavioral Research Branch, National Human Genome Research Institute (NHGRI), National Institutes of Health (NIH), Bethesda, Maryland 20892, USA