Hi Vale

do you want to tar, gzip and ftp us that entire subject dir so we can
take a look?
cheers
Bruce
On Wed, 19 Jun 2019, Barletta, Valeria wrote:

>
> Dear Freesurfers,
>
>
> I am having issues with a reconstruction which is giving me giant defects that I cannot correct (see
> screenshots).
>
> I tried to work on the wm and also to use the command 
>
> recon-all -subject NIMMS02_2year_recon -T2 T2SPACE.nii.gz -T2pial -autorecon3
>
> ... to correct using T2 images.
>
> Nothing worked. This never happened to me except this time. 
>
> Any suggestions? 
>
>
> Thank you a lot,
>
> Vale
>
>
>