Hi Bruce,

I am sorry, I mean, is there a DK atlas on a standard template brain (like MNI 152)? sorry, I don't know how DK atlas works. Is it a probabilistic atlas, or dependent on the exact folding pattern of the unique individual? (I guess it's the latter).

I'd like to generate a ROI brain mask for a specific region on the DK atlas, independent of the individual I ran. Having said so, I guess I can just run recon-all on a MNI 152 brain, so that I can get the ROI maps.

Thanks,
Daniel

-- 
Yung-Jui "Daniel" Yang, PhD
Postdoctoral Researcher
Yale Child Study Center
New Haven, CT
(203) 737-5454

On 7/15/13 8:43 PM, "Bruce Fischl" <fischl@nmr.mgh.harvard.edu> wrote:

Hi Daniel

sorry, can you clarify? The DK atlas is estimated on every brain that you
run recon-all on and stored in the label directory. Is that what you want?

cheers
Bruce

On Mon, 15 Jul 2013,
Yang, Daniel wrote:

Dear FreeSurfer Expert,
I would like to draw the specific ROI of the DK atlas (not specific
individual, but this ROI in general). I'm wondering how this ROI can be
extracted/created as a mask so that I can draw it on the brain using some
software?
Could you please advise?
Thanks a lot,
Daniel
-- 
Yung-Jui "Daniel" Yang, PhD
Postdoctoral Researcher
Yale Child Study Center
New Haven, CT
(203) 737-5454



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