Hi everyone,

when I used following command:

mri_binarize --i myfile.img --match 17 --binval -1 --o your.lefthippo.nii.gz

then I got output your.lefthippo.nii.gz file when I read this file using FREEVIEW then it completly different from original mask.



Thanks

Dilip​


On Thu, Apr 6, 2017 at 11:08 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
Hi Dilip

yes, freesurfer will do this for you, although the labels will be 17 for
left hippocampus and 53 for right.

cheers
Bruce
On Thu, 6 Apr 2017, Dilip Puri wrote:

> Hi everyone,
>
> I am working on Hippocampus segmentation using Neural Networks for that I need labeled images of Hippocampus corresponding to original images.
>
> I am using OASIS Dataset for this. I want to generate labeled images using FREESURFER. Is there any way to label each 3D co-ordinate
> HippoCampus -1
> Otherwise - 0
>
> Here are sample files link
>
> Kindly help me!
>
>
> Dilip Puri
> IIIT Vadodara
>
>
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.