Can you run the command in the command window that you start freeview?

Ruopeng

On Sep 16, 2019, at 5:11 PM, Miguel Ángel Rivas Fernández <miguelrivasfdez@gmail.com> wrote:

        External Email - Use Caution        

Dear Ruopeng,

I put that command in the freeview command console and this is the output

[FreeView] ls /usr/local/freesurfer/subjects/4227/mri/brainmask.mgz

This is not a shell. Only freeview commands are supported. Type '-h' for all the available commands.

 Best regards,

El lun., 16 sept. 2019 a las 22:58, Ruopeng Wang (<rpwang@nmr.mgh.harvard.edu>) escribió:

If you run:

ls /usr/local/freesurfer/subjects/4227/mri/brainmask.mgz

What does it show?

Ruopeng

On 9/16/19 4:29 PM, Miguel Ángel Rivas Fernández wrote:

        External Email - Use Caution        

Dear Freesurfer devs,

I tried to open the brainmask.mgz file in freeview but I obtained this error:

mghRead(/usr/local/freesurfer/subjects/4227/mri/brainmask.mgz, -1): could not open file
MRIread failed: Unable to read from /usr/local/freesurfer/subjects/4227/mri/brainmask.mgz
mghRead(/usr/local/freesurfer/subjects/4227/mri/brainmask.mgz, -1): could not open file

Any suggestion about what could be the problem?, maybe the write permissons of the freesurfer folder?

I am using the freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c version that is installed in a Ubuntu 18.04 virtual machine. It is very strange because few weeks ago everything it was working correctly.

Thanks in advance.

Best regards,

--

Miguel Ángel Rivas Fernández

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

--

Miguel Ángel Rivas Fernández

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer