Thanks for your help on this! It was a corruption problem, just as you said- didn't seem to be a disk space problem, but I deleted the file, re-ran, and things went fine.

Cheers

Ben

_______________________
Ben Smith, MSc.
Ph.D. Candidate
University of Southern California
w | +1 213-740 7851
m | +1 323-385 9349
skype | ben.smith.nz


On Mon, Feb 19, 2018 at 9:11 AM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
Hi Ben

we find the CC as the region where there is the largest left/right WM
connection. We then orient it to be vertical and find principle directions,
and divvy it up into however many segments you want (I think the default is
5 but this can be changed). We then grow it out laterally as far as your
specify

cheers
Bruce


On Mon, 19 Feb
2018, Benjamin Yeske wrote:

> Hello Freesurfer Experts,
> I was looking through your website to see if I could find any info/papers that explained what
> landmarks you use for segmenting the corpus callosum, but I couldn't find anything on the topic.
> Could you please point me to a paper or resource that explains how freesurfer captures the corpus
> callosum and what landmarks it use to segment it out? We'd like to be able to hand check this region
> for accuracy in our TBI patients brain scans.
>
> Thank you,
> Ben
>
>
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