Message: 4
Date: Mon, 30 Nov 2020 19:16:06 +0000
From: "Glasser, Matthew" <glasserm@wustl.edu>
Subject: Re: [Freesurfer] arguments to use after pial edits {Disarmed}
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Message-ID: <274FD511-F94F-4BC1-AE0C-804F1A6A3A24@wustl.edu>
Content-Type: text/plain; charset="utf-8"

        External Email - Use Caution       

I find the recon-all table to be helpful:

http://secure-web.cisco.com/1rQT1vL5GWrATp5z0Ct2LBj8MsEx75qijDiNOIOc1xsGTqc0VC-s7rH5tRIiUV_kHXR7CsV_-uoWR6y_oPuNxiCAZCmbkgfSfUxHd4oB4gX7XvLCt40MlQR_Ejq0tpN0lnJJt1uO1jl_1XWYZQv92-3NGME0PKZPC51_qjOKHk9cLfcojjN-AssGWAZ7y0t-UJXooxg2G2tzrQqm9emqIASj8_asI8t84TuQRjHEjkEj7KDq8IvfbXNQIT5xDLxB5A7a-aT2IrgX3QZs0Stdt7Q/http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FReconAllTableStableV6.0

In this case, you probably need to run -autorecon2, as all subsequent steps are affected by the brainmask.mgz file.

Matt.