I ran this code succefully last year. But I cannot completely this command in recent days as errors just above. There is nothing change in the server during this time. According this ERROR information, I asked administrator to delete some files in the /tmp folder and change the write access. But it was still report similar error. And I ran this command as root, then it terminated as a similar situation.

Hi Rujing

do you have write access to /tmp? Or is it full maybe?

Bruce

On Thu, 13 Feb 2014,

charujing123 wrote:

> Dear FS experts,

> It represents this message in the command window after ran "recon-all

> -autorecon-pial -s CON_EIU01 -no-isrunning":

> Reading annotation reading colortable from annotation file...

> colortable with 36 entries read originally/autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan

> _killiany.txt)

> CTABwriteFileASCII(/tmp/mri_segstats.tmp.CON_EIU04.lh.64.ctab): could not

> open for writing

> Seg base 1000 Permission denied

> CTABreadASCII(/tmp/mri_segstats.tmp.CON_EIU04.lh.64.ctab): could not open

> file

> No such file or directory

> ERROR: reading /tmp/mri_segstats.tmp.CON_EIU04.lh.64.ctab

> Linux centos2 2.6.18-308.20.1.el5xen #1 SMP Tue Nov 13 11:03:56 EST 2012

> x86_64 x86_64 x86_64 GNU/Linux

> recon-all -s CON_EIU04 exited with ERRORS at Thu Feb 13 14:01:12 CST 2014

> Thanks.

> All the best.

> Rujing Zha

> 2014-02-13

> ____________________________________________________________________________

> charujing123

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