External Email - Use Caution        

Hi Brady,

You can use: https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/registration/Wu2017_RegistrationFusion You will have to use nearest neighbor interpolation since the parcels should have integer values.

Or you can try out the Schaefer parcellations (https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal) that were estimated in the fsaverage surface space, so it won't suffer from interpolation issues :)

Regards,
Thomas

On Wed, Jun 19, 2019 at 11:31 AM Williamson, Brady <Brady.Williamson@cchmc.org> wrote:
        External Email - Use Caution       

Hello,

I am trying to convert parcellations in MNI space (BrainNetome and Craddock 200) to a surface annotation file in fsaverage space. I have seen several posts that seem to talk about steps that may be applicable but none of them are very efficient. Is there an easy/direct way to do this conversion? It seems like I am missing something really obvious, like a one line command, that would do the trick.

Thank you for any assistance,
Brady

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer