----- Forwarded Message -----
From: Anupa AV <av.anupa@yahoo.com>
To: Bruce Fischl <fischl@nmr.mgh.harvard.edu>
Sent: Wednesday, April 3, 2013 11:57 AM
Subject: Re: [Freesurfer] Making cuts using tksurfer

Dear Sir,

As you recommended, I have made a cut using plane option. Kindly see the attachment.

My research interst is to make a coronal cut.

I've done it by merging the standard FreeSurfer parcellation labels of the superior frontal gyrus, the rostral middle frontal gyrus and caudal
middle frontal gyrus (after loading DKatlas).

Then I cut the merged merged region using cut plane option.

Now I want to make a coronal cut at Talairach coordinate y=26(say), so as to seperate dorsolateral prefrontal cortex from premotor cortex.

Can you please tell me how to make a coronal cut at y=26?

Thanks in advance for your response.

From: Bruce Fischl <fischl@nmr.mgh.harvard.edu>
To: Anupa AV <av.anupa@yahoo.com>
Cc: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Sent: Monday, April 1, 2013 6:15 PM
Subject: Re: [Freesurfer] MAking cuts using tksurfer

you might try using a cutting plane instead of having to draw the entire
cut.

cheers
Bruce
On Mon, 1 Apr 2013, Anupa AV wrote:

> Dear All,
>
> How to explore the "cut" tools in freesurfer using tksurfer?
> I'd like to make a cut along the vertex on the cortical surface (say, inflated) to divide medial and lateral components.
> How to do it after loading DKatlas labels and I want to cut along the vertex to divde medial and lateral components.?
>
> Thanks in advance for your response.
>
>

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