does that file exist?

On 03/25/2014 10:04 AM, Carl Anderson wrote:
> Dear list,
> I tried runing the example in mris_label2annot's help:
>
> mris_label2annot --s bert --h lh --ctab aparc.annot.ctab --a myaparc
> --l lh.unknown.label --l lh.bankssts.label --l
> lh.caudalanteriorcingulate.label --nhits nhits.mgh
>
> got the following result:
>
> ERROR: cannot find or read aparc.annot.ctab
>
> aparc.annot.ctab is in bert and here is my setup:
>
> -------- freesurfer-Darwin-snowleopard-i686-stable-pub-v5.3.0 --------
> Setting up environment for FreeSurfer/FS-FAST (and FSL)
> FREESURFER_HOME /Applications/freesurfer
> FSFAST_HOME /Applications/freesurfer/fsfast
> FSF_OUTPUT_FORMAT nii.gz
> SUBJECTS_DIR /Applications/freesurfer/subjects
> MNI_DIR /Applications/freesurfer/mni
> FSL_DIR /usr/local/fsl
>
> could this be a bash vs tcsh problem as I am using bash?
>
> --
> <<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>
> Carl M. Anderson, Ph.D. (mail stop 204)
> Assistant Professor of Psychiatry,
> Harvard Medical School &
> The Neuroimaging Center,
> McLean Hospital 115 Mill St. Belmont, MA 02478
> Ph: 617-855-2972; Fax: 617-855-2770

> e-mail: remfract@gmail.com <mailto:remfract@gmail.com>;
> carl_anderson@hms.harvard.edu <mailto:carl_anderson@hms.harvard.edu>

> <<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>
>
>

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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
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Fax: 617-726-7422

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