Hi Bruce,
I?ve attached a screen shot of a temporal pole of one of the brains that we
have had issues with. Here the issue is that there is a lesion without a
very clear boundary for the white matter and freesurfer was unresponsive to
simply using white matter edits (placing 255s on the wm.mgz), and so we
tried placing control points where we think the white matter boundary should
lie. However, we know that control points should not be placed in these dark
spots of a lesion.
Thank you,
Allison