Thanks Nick and Anil! I tried with the Bert data set in its original location, and got a different kind of error:

ERROR: talairach_afd::Load_xfm(): could not parse transforms/talairach.xfm
Manual Talairach alignment may be necessary, or
include the -notal-check flag to skip this test,
making sure the -notal-check flag follows -all
or -autorecon1 in the command string.

I am now trying to run recon-all through FMRIB (FSL)...

Tudor

On 18 February 2013 00:25, Nick Schmansky <nicks@nmr.mgh.harvard.edu> wrote:
Thanks Anil!  Tudor, sounds like you should give this a try.

I'm re-posting this to the freesurfer list to archive it.

Nick



>
> Hi
>
> I am having the same problem but I have an idea where it's occurring.
>
> I have Windows XP Virtualbox Ubuntu Install where I have an windows share
> on the Linux using shared folder from windows
>
> When I use the shared folder it gives this error
> When I use the Bert data set in its original location subjects dir it
> works fine
> When I transfer a new subject in virtualuser Freesurfer subjects folder
> it's works fine
> I ran it with -debug command to check and I thinks nu_ estimate makes some
> temp folders which gets messed up when you use shared folders.
> So to avoid this error transfer the subjects folder to virtualuser subject
> folder rather than using -sd command to specify a shared folder
>
> Sincerely
>
> Anil
>
>
>
>



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