Sorry for the picky follow-up question regarding the longitudinal hippocampal subfields processing, but do you suggest that when the official version 6 comes out, we rerun everything (including the standard FS long processing) or would it be ok to just rerun the hippocampal part (on scan processed with 5.3)?

For us, the first option might necessitate a new round of QC, which would be very time consuming for a large longitudinal dataset.

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Christian Krog Tamnes <c.k.tamnes@psykologi.uio.no>
Sent: 30 November 2016 15:57
To: Freesurfer support list
Subject: Re: [Freesurfer] longHippoSubfields

We will get the beta for now then.

Thanks Eugenio!

regards,

Christian

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Iglesias Gonzalez, Eugenio <e.iglesias@ucl.ac.uk>
Sent: 30 November 2016 15:46
To: Freesurfer support list
Subject: Re: [Freesurfer] longHippoSubfields

Hi Christian,

I believe you were unlucky enough to download the dev version during the days that this module was broken.

I would strongly suggest that you either download the beta version of 6.0 or wait until the official release of this version, which should be happening soon.

Cheers,

/Eugenio

Juan Eugenio Iglesias

ERC Senior Research Fellow
Translational Imaging Group
University College London
http://www.jeiglesias.com
http://cmictig.cs.ucl.ac.uk/

On 30 Nov 2016, at 14:26, Christian Krog Tamnes <c.k.tamnes@psykologi.uio.no> wrote:

Dear Juan and FreeSurfer team,

We are trying to test out the longitudinal hippocampus subfield segmentation pipeline, but can’t seem to run/find the script (longHippoSubfieldsT1.sh). We have done the standard processing in v5.3 and have the following dev version: freesurfer-Linux-centos6_x86_64-dev-20160914-bdac8bc. Sorry for the basic question, but do we simply need a later dev build?

Best regards,

Christian
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