> Date: Thu, 16 Oct 2014 12:12:23 -0400
> From: greve@nmr.mgh.harvard.edu
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] volume to surface registration problem
>
>
> I have not tested it with spm12, so use spm8. There is not currently a
> way to run the spm init from preproc-sess, so you'll have to run it from
> register-sess.
>
> On 10/16/2014 12:04 PM, Xiaomin Yue wrote:
> > Hi Doug,
> >
> > Thanks for the promptly response. I do have spm8 and spm12b
> > installed. Which version should I use? Also, how to change the spm
> > as the inital registration method in the preproc-sess?
> >
> > Xiaomin
> >
> > > Date: Thu, 16 Oct 2014 12:00:04 -0400
> > > From: greve@nmr.mgh.harvard.edu
> > > To: freesurfer@nmr.mgh.harvard.edu
> > > Subject: Re: [Freesurfer] volume to surface registration problem
> > >
> > >
> > > The problem is probabably that the fsl flirt registration failed and
> > > that caused bbr to fail. If you have spm and matlab installed, running
> > > it with
> > >
> > > cd /misc/data41/yuex/humanfMRI/human_curvature/subjdata/field090514
> > > bbregister --s field --init-spm --6 --bold --mov bold/template.nii
> > --reg bold/register.dof6.dat --init-reg-out bold/init.register.dof6.dat
> > >
> > >
> > >
> > >
> > > On 10/16/2014 11:14 AM, Xiaomin Yue wrote:
> > > > Hi,
> > > >
> > > > When I used preproc-sess processing my data, the registration output
> > > > is off a great of deal. The functional data was collected using 7T,
> > > > and the surface was reconstructed successfully from 3T data and was
> > > > checked visually multiple times. I am using fs5.3 installed on a
> > > > linux system. Attached is the registration log file.
> > > >
> > > > Any suggestions will be appreciated.
> > > >
> > > > Xiaomin Yue
> > > >
> > > >
> > > > _______________________________________________
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> > >
> > > --
> > > Douglas N. Greve, Ph.D.
> > > MGH-NMR Center
> > > greve@nmr.mgh.harvard.edu
> > > Phone Number: 617-724-2358
> > > Fax: 617-726-7422
> > >
> > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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> > > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> > >
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> > >
> > >
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>
> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> greve@nmr.mgh.harvard.edu
> Phone Number: 617-724-2358
> Fax: 617-726-7422
>
> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>
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