Daniel,
What operating system are you on? If your using MacOS, you must have
XQuartz installed in order to use the the Tkregister2/Tksurfer/Tkmedit
tools. Check the Application->Utilities folder to see if its already
installed. If not, you can download it from here:
http://xquartz.macosforge.org/landing/
If your are on Linux than I am sorry but someone else will have to chime
in with a potential solution.
-Zeke
> _______________________________________________
> Hello freesurfers,
> I just ran registration of my functional images and am trying to visualize
> the registration for assessment. However, when I use the commands
> "tkregister-sess -s $SESSIONNAME -d $SESSIONDIRECTORY -fsd bold -funcstem
> f"
> or
>
> "tkregister2 --targ T1.mgz --fstarg --s $SUBJECTID --surf --mov
> $FUNCTIONAL_MRI --reg $REG_DAT --plane sag --movbright $MYBRIGHTNESS"
>
> the command gets stuck on "Opening window SUBJECT01".
>
>
> I've also tried just opening tksurfer and tkmedit but the terminal
> produces
> no output/windows opening and simply freezes.
>
> Any ideas to why this could be occurring? I've let it sit at this stage
> for multiple hours without anything popping up and without any errors.
>
>
> Thanks!
>
> Daniel
>
>
> --
> Daniel Cole
> University of Rochester
> Brain and Cognitive Sciences
> dcole10@u.rochester.edu
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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