#@# CA Normalize Mon Sep 15 18:53:34 CEST 2008 /home/neuro/joost/redes/maranon/freesurfer/28646/mri mri_ca_normalize -mask brainmask.mgz nu.mgz /usr/local/freesurfer/average/RB_all_2008-03-26.gca transforms/talairach.lta norm.mgz using MR volume brainmask.mgz to mask input volume... reading 1 input volumes reading atlas from '/usr/local/freesurfer/average/RB_all_2008-03-26.gca'... reading transform from 'transforms/talairach.lta'... reading input volume from nu.mgz... resetting wm mean[0]: 102 --> 107 resetting gm mean[0]: 64 --> 64 input volume #1 is the most T1-like using real data threshold=36.9 using (107, 112, 118) as brain centroid... mean wm in atlas = 107, using box (91,98,99) --> (123, 125,137) to find MRI wm before smoothing, mri peak at 119 after smoothing, mri peak at 118, scaling input intensities by 0.907 scaling channel 0 by 0.90678 using 244171 sample points... INFO: compute sample coordinates transform 1.077 0.007 0.006 -13.760; 0.004 1.193 0.162 -58.762; 0.004 -0.142 1.122 -0.222; 0.000 0.000 0.000 1.000; INFO: transform used finding control points in Left_Cerebral_White_Matter.... found 41584 control points for structure... bounding box (127, 78, 42) --> (190, 173, 189) Left_Cerebral_White_Matter: limiting intensities to 92.0 --> 104.0 35 of 87 (40.2%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 40735 control points for structure... bounding box (69, 79, 41) --> (129, 174, 189) Right_Cerebral_White_Matter: limiting intensities to 94.0 --> 108.0 36 of 143 (25.2%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3012 control points for structure... bounding box (130, 150, 64) --> (175, 187, 112) Left_Cerebellum_White_Matter: limiting intensities to 75.0 --> 85.0 6 of 21 (28.6%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2764 control points for structure... bounding box (85, 150, 62) --> (128, 186, 112) Right_Cerebellum_White_Matter: limiting intensities to 81.0 --> 89.0 1 of 8 (12.5%) samples deleted finding control points in Brain_Stem.... found 3520 control points for structure... bounding box (113, 143, 95) --> (143, 201, 122) Brain_Stem: limiting intensities to 76.0 --> 84.0 2 of 10 (20.0%) samples deleted using 269 total control points for intensity normalization... bias field = 1.064 +- 0.038 0 of 189 control points discarded finding control points in Left_Cerebral_White_Matter.... found 41584 control points for structure... bounding box (127, 78, 42) --> (190, 173, 189) Left_Cerebral_White_Matter: limiting intensities to 94.0 --> 114.0 33 of 116 (28.4%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 40735 control points for structure... bounding box (69, 79, 41) --> (129, 174, 189) Right_Cerebral_White_Matter: limiting intensities to 96.0 --> 113.0 40 of 132 (30.3%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3012 control points for structure... bounding box (130, 150, 64) --> (175, 187, 112) Left_Cerebellum_White_Matter: limiting intensities to 71.0 --> 92.0 19 of 60 (31.7%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2764 control points for structure... bounding box (85, 150, 62) --> (128, 186, 112) Right_Cerebellum_White_Matter: limiting intensities to 79.0 --> 93.0 12 of 57 (21.1%) samples deleted finding control points in Brain_Stem.... found 3520 control points for structure... bounding box (113, 143, 95) --> (143, 201, 122) Brain_Stem: limiting intensities to 71.0 --> 90.0 15 of 74 (20.3%) samples deleted using 439 total control points for intensity normalization... bias field = 0.999 +- 0.045 1 of 320 control points discarded finding control points in Left_Cerebral_White_Matter.... found 41584 control points for structure... bounding box (127, 78, 42) --> (190, 173, 189) Left_Cerebral_White_Matter: limiting intensities to 95.0 --> 110.0 77 of 215 (35.8%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 40735 control points for structure... bounding box (69, 79, 41) --> (129, 174, 189) Right_Cerebral_White_Matter: limiting intensities to 94.0 --> 111.0 80 of 263 (30.4%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3012 control points for structure... bounding box (130, 150, 64) --> (175, 187, 112) Left_Cerebellum_White_Matter: limiting intensities to 75.0 --> 89.0 41 of 104 (39.4%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2764 control points for structure... bounding box (85, 150, 62) --> (128, 186, 112) Right_Cerebellum_White_Matter: limiting intensities to 76.0 --> 92.0 20 of 82 (24.4%) samples deleted finding control points in Brain_Stem.... found 3520 control points for structure... bounding box (113, 143, 95) --> (143, 201, 122) Brain_Stem: limiting intensities to 70.0 --> 89.0 42 of 129 (32.6%) samples deleted using 793 total control points for intensity normalization... bias field = 1.016 +- 0.042 0 of 533 control points discarded writing normalized volume to norm.mgz... freeing GCA...done. normalization took 1 minutes and 51 seconds. #-------------------------------------- #@# CA Reg Mon Sep 15 18:55:25 CEST 2008 /home/neuro/joost/redes/maranon/freesurfer/28646/mri mri_ca_register -align-after -nobigventricles -mask brainmask.mgz -T transforms/talairach.lta norm.mgz /usr/local/freesurfer/average/RB_all_2008-03-26.gca transforms/talairach.m3z renormalizing sequences with structure alignment, equivalent to: -renormalize -regularize_mean 0.500 -regularize 0.500 not handling expanded ventricles... using MR volume brainmask.mgz to mask input volume... using previously computed transform transforms/talairach.lta reading 1 input volumes... logging results to talairach.log reading input volume 'norm.mgz'... reading GCA '/usr/local/freesurfer/average/RB_all_2008-03-26.gca'... freeing gibbs priors...done. average std[0] = 5.0 label assignment complete, 0 changed (0.00%) det(m_affine) = 1.47 (predicted orig area = 5.5) label assignment complete, 0 changed (0.00%) **************** pass 1 of 1 ************************ setting smoothness coefficient to 0.04 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.795, neg=0, invalid=766 0001: dt=242.449905, rms=0.746 (6.199%), neg=0, invalid=766 0002: dt=235.003155, rms=0.715 (4.124%), neg=0, invalid=766 0003: dt=117.333333, rms=0.709 (0.824%), neg=0, invalid=766 0004: dt=517.888000, rms=0.697 (1.677%), neg=0, invalid=766 0005: dt=221.952000, rms=0.692 (0.765%), neg=0, invalid=766 0006: dt=129.472000, rms=0.690 (0.278%), neg=0, invalid=766 0007: dt=517.888000, rms=0.687 (0.494%), neg=0, invalid=766 0008: dt=129.472000, rms=0.684 (0.462%), neg=0, invalid=766 0009: dt=129.472000, rms=0.683 (0.036%), neg=0, invalid=766 0010: dt=129.472000, rms=0.682 (0.178%), neg=0, invalid=766 0011: dt=129.472000, rms=0.680 (0.248%), neg=0, invalid=766 0012: dt=129.472000, rms=0.679 (0.274%), neg=0, invalid=766 0013: dt=129.472000, rms=0.677 (0.292%), neg=0, invalid=766 0014: dt=129.472000, rms=0.674 (0.370%), neg=0, invalid=766 0015: dt=129.472000, rms=0.672 (0.333%), neg=0, invalid=766 0016: dt=129.472000, rms=0.670 (0.232%), neg=0, invalid=766 0017: dt=129.472000, rms=0.669 (0.154%), neg=0, invalid=766 0018: dt=129.472000, rms=0.668 (0.176%), neg=0, invalid=766 0019: dt=129.472000, rms=0.667 (0.212%), neg=0, invalid=766 0020: dt=129.472000, rms=0.665 (0.196%), neg=0, invalid=766 0021: dt=129.472000, rms=0.664 (0.155%), neg=0, invalid=766 0022: dt=129.472000, rms=0.663 (0.134%), neg=0, invalid=766 0023: dt=129.472000, rms=0.663 (0.142%), neg=0, invalid=766 0024: dt=129.472000, rms=0.662 (0.140%), neg=0, invalid=766 0025: dt=129.472000, rms=0.661 (0.121%), neg=0, invalid=766 0026: dt=129.472000, rms=0.660 (0.098%), neg=0, invalid=766 0027: dt=1479.680000, rms=0.659 (0.208%), neg=0, invalid=766 0028: dt=32.368000, rms=0.659 (0.020%), neg=0, invalid=766 0029: dt=32.368000, rms=0.659 (0.007%), neg=0, invalid=766 0030: dt=32.368000, rms=0.659 (-0.014%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.659, neg=0, invalid=766 0031: dt=129.472000, rms=0.657 (0.292%), neg=0, invalid=766 0032: dt=369.920000, rms=0.656 (0.103%), neg=0, invalid=766 0033: dt=369.920000, rms=0.655 (0.150%), neg=0, invalid=766 0034: dt=369.920000, rms=0.654 (0.098%), neg=0, invalid=766 0035: dt=369.920000, rms=0.653 (0.153%), neg=0, invalid=766 0036: dt=369.920000, rms=0.653 (0.061%), neg=0, invalid=766 0037: dt=369.920000, rms=0.652 (0.211%), neg=0, invalid=766 0038: dt=369.920000, rms=0.651 (0.067%), neg=0, invalid=766 0039: dt=369.920000, rms=0.650 (0.203%), neg=0, invalid=766 0040: dt=369.920000, rms=0.650 (-0.014%), neg=0, invalid=766 0041: dt=32.368000, rms=0.650 (0.006%), neg=0, invalid=766 0042: dt=32.368000, rms=0.650 (0.003%), neg=0, invalid=766 setting smoothness coefficient to 0.15 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.655, neg=0, invalid=766 0043: dt=40.205128, rms=0.653 (0.301%), neg=0, invalid=766 0044: dt=173.988024, rms=0.648 (0.753%), neg=0, invalid=766 0045: dt=172.719665, rms=0.635 (2.007%), neg=0, invalid=766 0046: dt=27.512195, rms=0.634 (0.289%), neg=0, invalid=766 0047: dt=18.051282, rms=0.633 (0.029%), neg=0, invalid=766 0048: dt=18.051282, rms=0.633 (0.016%), neg=0, invalid=766 0049: dt=18.051282, rms=0.633 (0.014%), neg=0, invalid=766 0050: dt=18.051282, rms=0.633 (0.025%), neg=0, invalid=766 0051: dt=18.051282, rms=0.632 (0.129%), neg=0, invalid=766 0052: dt=18.051282, rms=0.630 (0.294%), neg=0, invalid=766 0053: dt=18.051282, rms=0.628 (0.442%), neg=0, invalid=766 0054: dt=18.051282, rms=0.625 (0.492%), neg=0, invalid=766 0055: dt=18.051282, rms=0.622 (0.446%), neg=0, invalid=766 0056: dt=18.051282, rms=0.619 (0.369%), neg=0, invalid=766 0057: dt=18.051282, rms=0.618 (0.290%), neg=0, invalid=766 0058: dt=18.051282, rms=0.616 (0.229%), neg=0, invalid=766 0059: dt=18.051282, rms=0.615 (0.193%), neg=0, invalid=766 0060: dt=18.051282, rms=0.614 (0.223%), neg=0, invalid=766 0061: dt=18.051282, rms=0.612 (0.280%), neg=0, invalid=766 0062: dt=18.051282, rms=0.610 (0.288%), neg=0, invalid=766 0063: dt=18.051282, rms=0.609 (0.240%), neg=0, invalid=766 0064: dt=18.051282, rms=0.607 (0.208%), neg=0, invalid=766 0065: dt=18.051282, rms=0.606 (0.166%), neg=0, invalid=766 0066: dt=18.051282, rms=0.606 (0.129%), neg=0, invalid=766 0067: dt=18.051282, rms=0.605 (0.153%), neg=0, invalid=766 0068: dt=18.051282, rms=0.604 (0.195%), neg=0, invalid=766 0069: dt=18.051282, rms=0.602 (0.185%), neg=0, invalid=766 0070: dt=18.051282, rms=0.602 (0.136%), neg=0, invalid=766 0071: dt=18.051282, rms=0.601 (0.101%), neg=0, invalid=766 0072: dt=18.051282, rms=0.601 (0.074%), neg=0, invalid=766 0073: dt=124.416000, rms=0.600 (0.042%), neg=0, invalid=766 0074: dt=124.416000, rms=0.600 (0.048%), neg=0, invalid=766 0075: dt=124.416000, rms=0.600 (-0.352%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.600, neg=0, invalid=766 0076: dt=48.326531, rms=0.598 (0.308%), neg=0, invalid=766 0077: dt=36.571429, rms=0.598 (0.043%), neg=0, invalid=766 0078: dt=36.571429, rms=0.598 (0.030%), neg=0, invalid=766 0079: dt=36.571429, rms=0.598 (0.032%), neg=0, invalid=766 0080: dt=36.571429, rms=0.597 (0.012%), neg=0, invalid=766 0081: dt=36.571429, rms=0.597 (0.003%), neg=0, invalid=766 0082: dt=248.832000, rms=0.597 (0.126%), neg=0, invalid=766 0083: dt=31.104000, rms=0.597 (0.026%), neg=0, invalid=766 setting smoothness coefficient to 0.59 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.622, neg=0, invalid=766 0084: dt=5.592233, rms=0.621 (0.061%), neg=0, invalid=766 0085: dt=2.800000, rms=0.621 (0.012%), neg=0, invalid=766 0086: dt=2.800000, rms=0.621 (0.007%), neg=0, invalid=766 0087: dt=2.800000, rms=0.621 (-0.021%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.621, neg=0, invalid=766 0088: dt=0.150000, rms=0.621 (0.000%), neg=0, invalid=766 0089: dt=0.000000, rms=0.621 (-0.000%), neg=0, invalid=766 setting smoothness coefficient to 2.00 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.688, neg=0, invalid=766 0090: dt=5.690141, rms=0.670 (2.593%), neg=0, invalid=766 0091: dt=5.150000, rms=0.668 (0.305%), neg=0, invalid=766 0092: dt=2.304000, rms=0.668 (0.028%), neg=0, invalid=766 0093: dt=2.304000, rms=0.668 (-0.004%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.668, neg=0, invalid=766 0094: dt=0.000000, rms=0.668 (0.000%), neg=0, invalid=766 setting smoothness coefficient to 5.00 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.723, neg=0, invalid=766 0095: dt=0.112000, rms=0.722 (0.013%), neg=0, invalid=766 0096: dt=0.192000, rms=0.722 (0.014%), neg=0, invalid=766 0097: dt=0.275000, rms=0.722 (0.015%), neg=0, invalid=766 0098: dt=0.448000, rms=0.722 (0.032%), neg=0, invalid=766 0099: dt=0.824176, rms=0.721 (0.080%), neg=0, invalid=766 0100: dt=1.814815, rms=0.720 (0.209%), neg=0, invalid=766 0101: dt=2.055556, rms=0.719 (0.172%), neg=0, invalid=766 0102: dt=2.055556, rms=0.718 (0.036%), neg=0, invalid=766 0103: dt=2.055556, rms=0.718 (-0.104%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.718, neg=0, invalid=766 0104: dt=0.885906, rms=0.717 (0.237%), neg=0, invalid=766 0105: dt=0.384000, rms=0.717 (0.011%), neg=0, invalid=766 0106: dt=0.384000, rms=0.717 (-0.001%), neg=0, invalid=766 resetting metric properties... setting smoothness coefficient to 10.00 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.678, neg=0, invalid=766 0107: dt=0.837500, rms=0.659 (2.737%), neg=0, invalid=766 0108: dt=0.028000, rms=0.658 (0.191%), neg=0, invalid=766 0109: dt=0.028000, rms=0.658 (-0.068%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.658, neg=0, invalid=766 0110: dt=0.016000, rms=0.658 (0.029%), neg=0, invalid=766 0111: dt=0.000313, rms=0.658 (-0.000%), neg=0, invalid=766 renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.11725 (24) mri peak = 0.03829 (30) Left_Lateral_Ventricle (4): linear fit = 1.23 x + 0.0 (2021 voxels, overlap=0.087) Left_Lateral_Ventricle (4): linear fit = 1.23 x + 0.0 (2021 voxels, peak = 29), gca=29.4 gca peak = 0.14022 (22) mri peak = 0.02527 (21) Right_Lateral_Ventricle: unreasonable value (52.2/21.0), not in range [ 0, 45] - rejecting gca peak = 0.24234 (100) mri peak = 0.08088 (101) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (404 voxels, overlap=0.999) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (404 voxels, peak = 100), gca=100.0 gca peak = 0.19192 (97) mri peak = 0.07670 (103) Left_Pallidum (13): linear fit = 1.05 x + 0.0 (353 voxels, overlap=0.822) Left_Pallidum (13): linear fit = 1.05 x + 0.0 (353 voxels, peak = 102), gca=101.8 gca peak = 0.24007 (63) mri peak = 0.08332 (72) Right_Hippocampus (53): linear fit = 1.12 x + 0.0 (1041 voxels, overlap=0.654) Right_Hippocampus (53): linear fit = 1.12 x + 0.0 (1041 voxels, peak = 71), gca=70.9 gca peak = 0.29892 (64) mri peak = 0.07336 (74) Left_Hippocampus (17): linear fit = 1.10 x + 0.0 (1030 voxels, overlap=0.875) Left_Hippocampus (17): linear fit = 1.10 x + 0.0 (1030 voxels, peak = 70), gca=70.4 gca peak = 0.12541 (104) mri peak = 0.05840 (109) Right_Cerebral_White_Matter (41): linear fit = 1.08 x + 0.0 (83137 voxels, overlap=0.558) Right_Cerebral_White_Matter (41): linear fit = 1.08 x + 0.0 (83137 voxels, peak = 112), gca=111.8 gca peak = 0.13686 (104) mri peak = 0.05550 (109) Left_Cerebral_White_Matter (2): linear fit = 1.05 x + 0.0 (85217 voxels, overlap=0.583) Left_Cerebral_White_Matter (2): linear fit = 1.05 x + 0.0 (85217 voxels, peak = 109), gca=109.2 gca peak = 0.11691 (63) mri peak = 0.03159 (77) Left_Cerebral_Cortex (3): linear fit = 1.23 x + 0.0 (53200 voxels, overlap=0.006) Left_Cerebral_Cortex (3): linear fit = 1.23 x + 0.0 (53200 voxels, peak = 77), gca=77.2 gca peak = 0.13270 (63) mri peak = 0.02965 (78) Right_Cerebral_Cortex (42): linear fit = 1.20 x + 0.0 (55123 voxels, overlap=0.014) Right_Cerebral_Cortex (42): linear fit = 1.20 x + 0.0 (55123 voxels, peak = 76), gca=75.6 gca peak = 0.15182 (70) mri peak = 0.10865 (79) Right_Caudate (50): linear fit = 1.12 x + 0.0 (495 voxels, overlap=0.128) Right_Caudate (50): linear fit = 1.12 x + 0.0 (495 voxels, peak = 79), gca=78.8 gca peak = 0.14251 (76) mri peak = 0.10049 (89) Left_Caudate (11): linear fit = 1.08 x + 0.0 (599 voxels, overlap=0.614) Left_Caudate (11): linear fit = 1.08 x + 0.0 (599 voxels, peak = 82), gca=81.7 gca peak = 0.12116 (60) mri peak = 0.06179 (75) Left_Cerebellum_Cortex (8): linear fit = 1.25 x + 0.0 (31957 voxels, overlap=0.003) Left_Cerebellum_Cortex (8): linear fit = 1.25 x + 0.0 (31957 voxels, peak = 75), gca=75.0 gca peak = 0.12723 (61) mri peak = 0.05627 (73) Right_Cerebellum_Cortex (47): linear fit = 1.25 x + 0.0 (35224 voxels, overlap=0.002) Right_Cerebellum_Cortex (47): linear fit = 1.25 x + 0.0 (35224 voxels, peak = 76), gca=76.2 gca peak = 0.22684 (88) mri peak = 0.06659 (93) Left_Cerebellum_White_Matter (7): linear fit = 1.05 x + 0.0 (10121 voxels, overlap=0.948) Left_Cerebellum_White_Matter (7): linear fit = 1.05 x + 0.0 (10121 voxels, peak = 92), gca=92.4 gca peak = 0.21067 (87) mri peak = 0.09866 (91) Right_Cerebellum_White_Matter (46): linear fit = 1.05 x + 0.0 (9092 voxels, overlap=0.922) Right_Cerebellum_White_Matter (46): linear fit = 1.05 x + 0.0 (9092 voxels, peak = 91), gca=91.3 gca peak = 0.25455 (62) mri peak = 0.11473 (73) Left_Amygdala (18): linear fit = 1.15 x + 0.0 (376 voxels, overlap=0.015) Left_Amygdala (18): linear fit = 1.15 x + 0.0 (376 voxels, peak = 71), gca=71.3 gca peak = 0.39668 (62) mri peak = 0.13868 (72) Right_Amygdala (54): linear fit = 1.15 x + 0.0 (364 voxels, overlap=0.209) Right_Amygdala (54): linear fit = 1.15 x + 0.0 (364 voxels, peak = 71), gca=71.3 gca peak = 0.10129 (93) mri peak = 0.06602 (94) Left_Thalamus_Proper (10): linear fit = 0.98 x + 0.0 (4203 voxels, overlap=0.987) Left_Thalamus_Proper (10): linear fit = 0.98 x + 0.0 (4203 voxels, peak = 91), gca=90.7 gca peak = 0.12071 (89) mri peak = 0.08480 (93) Right_Thalamus_Proper (49): linear fit = 1.05 x + 0.0 (3926 voxels, overlap=0.709) Right_Thalamus_Proper (49): linear fit = 1.05 x + 0.0 (3926 voxels, peak = 93), gca=93.4 gca peak = 0.13716 (82) mri peak = 0.09447 (90) Left_Putamen (12): linear fit = 1.05 x + 0.0 (2363 voxels, overlap=0.874) Left_Putamen (12): linear fit = 1.05 x + 0.0 (2363 voxels, peak = 86), gca=86.1 gca peak = 0.15214 (84) mri peak = 0.08724 (90) Right_Putamen (51): linear fit = 1.08 x + 0.0 (2271 voxels, overlap=0.852) Right_Putamen (51): linear fit = 1.08 x + 0.0 (2271 voxels, peak = 90), gca=90.3 gca peak = 0.08983 (85) mri peak = 0.06856 (93) Brain_Stem (16): linear fit = 1.05 x + 0.0 (12314 voxels, overlap=0.821) Brain_Stem (16): linear fit = 1.05 x + 0.0 (12314 voxels, peak = 89), gca=89.2 gca peak = 0.11809 (92) mri peak = 0.07734 (93) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (1333 voxels, overlap=0.696) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (1333 voxels, peak = 92), gca=92.0 gca peak = 0.12914 (94) mri peak = 0.07137 (104) Left_VentralDC (28): linear fit = 1.10 x + 0.0 (1416 voxels, overlap=0.580) Left_VentralDC (28): linear fit = 1.10 x + 0.0 (1416 voxels, peak = 103), gca=103.4 gca peak = 0.21100 (36) mri peak = 0.07619 (30) Third_Ventricle (14): linear fit = 0.80 x + 0.0 (134 voxels, overlap=0.372) Third_Ventricle (14): linear fit = 0.80 x + 0.0 (134 voxels, peak = 29), gca=28.8 gca peak = 0.13542 (27) mri peak = 0.10245 (21) Fourth_Ventricle (15): linear fit = 0.93 x + 0.0 (674 voxels, overlap=0.815) Fourth_Ventricle (15): linear fit = 0.93 x + 0.0 (674 voxels, peak = 25), gca=25.0 gca peak Unknown = 0.94427 ( 0) gca peak Left_Inf_Lat_Vent = 0.21802 (40) gca peak CSF = 0.17123 (45) gca peak Left_Accumbens_area = 0.25875 (69) gca peak Left_undetermined = 0.96240 (36) gca peak Left_vessel = 0.33262 (65) gca peak Left_choroid_plexus = 0.09846 (46) gca peak Right_Lateral_Ventricle = 0.14022 (22) gca peak Right_Inf_Lat_Vent = 0.28113 (34) gca peak Right_Accumbens_area = 0.27120 (72) gca peak Right_vessel = 0.61915 (60) gca peak Right_choroid_plexus = 0.12775 (51) gca peak Fifth_Ventricle = 0.45329 (44) gca peak WM_hypointensities = 0.11729 (81) gca peak non_WM_hypointensities = 0.10912 (56) gca peak Optic_Chiasm = 0.33287 (75) not using caudate to estimate GM means setting label Left_Lateral_Ventricle based on Right_Lateral_Ventricle = 1.23 x + 0 estimating mean gm scale to be 1.16 x + 0.0 estimating mean wm scale to be 1.06 x + 0.0 estimating mean csf scale to be 1.04 x + 0.0 label assignment complete, 0 changed (0.00%) **************** pass 1 of 1 ************************ setting smoothness coefficient to 0.01 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.661, neg=0, invalid=766 0112: dt=92.427907, rms=0.654 (1.193%), neg=0, invalid=766 0113: dt=221.952000, rms=0.649 (0.723%), neg=0, invalid=766 0114: dt=517.888000, rms=0.638 (1.599%), neg=0, invalid=766 0115: dt=32.368000, rms=0.638 (0.044%), neg=0, invalid=766 0116: dt=32.368000, rms=0.638 (0.014%), neg=0, invalid=766 0117: dt=32.368000, rms=0.638 (-0.016%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.638, neg=0, invalid=766 0118: dt=295.936000, rms=0.635 (0.450%), neg=0, invalid=766 0119: dt=129.472000, rms=0.634 (0.207%), neg=0, invalid=766 0120: dt=129.472000, rms=0.633 (0.067%), neg=0, invalid=766 0121: dt=517.888000, rms=0.632 (0.312%), neg=0, invalid=766 0122: dt=59.972028, rms=0.631 (0.077%), neg=0, invalid=766 0123: dt=129.472000, rms=0.631 (0.033%), neg=0, invalid=766 0124: dt=129.472000, rms=0.630 (0.099%), neg=0, invalid=766 0125: dt=129.472000, rms=0.629 (0.116%), neg=0, invalid=766 0126: dt=129.472000, rms=0.629 (0.132%), neg=0, invalid=766 0127: dt=129.472000, rms=0.628 (0.163%), neg=0, invalid=766 0128: dt=129.472000, rms=0.626 (0.218%), neg=0, invalid=766 0129: dt=129.472000, rms=0.625 (0.197%), neg=0, invalid=766 0130: dt=129.472000, rms=0.624 (0.168%), neg=0, invalid=766 0131: dt=129.472000, rms=0.623 (0.178%), neg=0, invalid=766 0132: dt=129.472000, rms=0.622 (0.205%), neg=0, invalid=766 0133: dt=129.472000, rms=0.621 (0.168%), neg=0, invalid=766 0134: dt=129.472000, rms=0.620 (0.127%), neg=0, invalid=766 0135: dt=129.472000, rms=0.619 (0.127%), neg=0, invalid=766 0136: dt=129.472000, rms=0.618 (0.152%), neg=0, invalid=766 0137: dt=129.472000, rms=0.617 (0.141%), neg=0, invalid=766 0138: dt=129.472000, rms=0.616 (0.115%), neg=0, invalid=766 0139: dt=129.472000, rms=0.616 (0.100%), neg=0, invalid=766 0140: dt=129.472000, rms=0.615 (0.130%), neg=0, invalid=766 0141: dt=129.472000, rms=0.614 (0.115%), neg=0, invalid=766 0142: dt=129.472000, rms=0.614 (0.102%), neg=0, invalid=766 0143: dt=129.472000, rms=0.613 (0.087%), neg=0, invalid=766 0144: dt=129.472000, rms=0.613 (0.090%), neg=0, invalid=766 0145: dt=129.472000, rms=0.612 (0.105%), neg=0, invalid=766 0146: dt=129.472000, rms=0.611 (0.088%), neg=0, invalid=766 0147: dt=129.472000, rms=0.611 (0.075%), neg=0, invalid=766 0148: dt=129.472000, rms=0.610 (0.082%), neg=0, invalid=766 0149: dt=129.472000, rms=0.610 (0.092%), neg=0, invalid=766 0150: dt=129.472000, rms=0.609 (0.079%), neg=0, invalid=766 0151: dt=129.472000, rms=0.609 (0.062%), neg=0, invalid=766 0152: dt=129.472000, rms=0.609 (0.077%), neg=0, invalid=766 0153: dt=129.472000, rms=0.608 (0.081%), neg=0, invalid=766 0154: dt=129.472000, rms=0.608 (0.066%), neg=0, invalid=766 0155: dt=129.472000, rms=0.607 (0.046%), neg=0, invalid=766 0156: dt=129.472000, rms=0.607 (0.056%), neg=0, invalid=766 0157: dt=129.472000, rms=0.607 (0.086%), neg=0, invalid=766 0158: dt=129.472000, rms=0.606 (0.060%), neg=0, invalid=766 0159: dt=129.472000, rms=0.606 (0.030%), neg=0, invalid=766 0160: dt=129.472000, rms=0.606 (0.042%), neg=0, invalid=766 0161: dt=129.472000, rms=0.605 (0.061%), neg=0, invalid=766 0162: dt=129.472000, rms=0.605 (0.052%), neg=0, invalid=766 0163: dt=129.472000, rms=0.605 (0.038%), neg=0, invalid=766 0164: dt=129.472000, rms=0.605 (0.038%), neg=0, invalid=766 0165: dt=129.472000, rms=0.604 (0.046%), neg=0, invalid=766 0166: dt=129.472000, rms=0.604 (0.050%), neg=0, invalid=766 0167: dt=129.472000, rms=0.604 (0.043%), neg=0, invalid=766 0168: dt=129.472000, rms=0.604 (0.037%), neg=0, invalid=766 0169: dt=129.472000, rms=0.603 (0.036%), neg=0, invalid=766 0170: dt=129.472000, rms=0.603 (0.051%), neg=0, invalid=766 0171: dt=129.472000, rms=0.603 (0.047%), neg=0, invalid=766 0172: dt=129.472000, rms=0.602 (0.037%), neg=0, invalid=766 0173: dt=129.472000, rms=0.602 (0.034%), neg=0, invalid=766 0174: dt=129.472000, rms=0.602 (0.038%), neg=0, invalid=766 0175: dt=129.472000, rms=0.602 (0.036%), neg=0, invalid=766 0176: dt=129.472000, rms=0.602 (0.035%), neg=0, invalid=766 0177: dt=129.472000, rms=0.601 (0.034%), neg=0, invalid=766 0178: dt=129.472000, rms=0.601 (0.038%), neg=0, invalid=766 0179: dt=129.472000, rms=0.601 (0.036%), neg=0, invalid=766 0180: dt=129.472000, rms=0.601 (0.027%), neg=0, invalid=766 0181: dt=129.472000, rms=0.601 (0.025%), neg=0, invalid=766 0182: dt=129.472000, rms=0.600 (0.033%), neg=0, invalid=766 0183: dt=129.472000, rms=0.600 (0.036%), neg=0, invalid=766 0184: dt=129.472000, rms=0.600 (0.037%), neg=0, invalid=766 0185: dt=129.472000, rms=0.600 (0.025%), neg=0, invalid=766 0186: dt=129.472000, rms=0.600 (0.020%), neg=0, invalid=766 0187: dt=129.472000, rms=0.600 (0.032%), neg=0, invalid=766 0188: dt=129.472000, rms=0.599 (0.034%), neg=0, invalid=766 0189: dt=129.472000, rms=0.599 (0.028%), neg=0, invalid=766 0190: dt=129.472000, rms=0.599 (0.023%), neg=0, invalid=766 0191: dt=129.472000, rms=0.599 (0.021%), neg=0, invalid=766 0192: dt=1183.744000, rms=0.599 (0.034%), neg=0, invalid=766 0193: dt=32.368000, rms=0.599 (0.001%), neg=0, invalid=766 0194: dt=32.368000, rms=0.599 (0.001%), neg=0, invalid=766 0195: dt=32.368000, rms=0.599 (-0.002%), neg=0, invalid=766 setting smoothness coefficient to 0.03 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.600, neg=0, invalid=766 0196: dt=123.092652, rms=0.596 (0.750%), neg=0, invalid=766 0197: dt=109.090909, rms=0.589 (1.143%), neg=0, invalid=766 0198: dt=36.288000, rms=0.586 (0.470%), neg=0, invalid=766 0199: dt=150.654867, rms=0.583 (0.433%), neg=0, invalid=766 0200: dt=52.040404, rms=0.580 (0.662%), neg=0, invalid=766 0201: dt=52.114286, rms=0.578 (0.251%), neg=0, invalid=766 0202: dt=102.956522, rms=0.576 (0.344%), neg=0, invalid=766 0203: dt=40.470588, rms=0.574 (0.279%), neg=0, invalid=766 0204: dt=145.152000, rms=0.573 (0.339%), neg=0, invalid=766 0205: dt=45.473684, rms=0.571 (0.293%), neg=0, invalid=766 0206: dt=145.152000, rms=0.569 (0.273%), neg=0, invalid=766 0207: dt=40.861538, rms=0.568 (0.265%), neg=0, invalid=766 0208: dt=145.152000, rms=0.566 (0.291%), neg=0, invalid=766 0209: dt=44.800000, rms=0.565 (0.175%), neg=0, invalid=766 0210: dt=103.680000, rms=0.564 (0.157%), neg=0, invalid=766 0211: dt=45.419355, rms=0.563 (0.165%), neg=0, invalid=766 0212: dt=62.208000, rms=0.563 (0.105%), neg=0, invalid=766 0213: dt=77.639344, rms=0.562 (0.163%), neg=0, invalid=766 0214: dt=36.288000, rms=0.561 (0.092%), neg=0, invalid=766 0215: dt=331.776000, rms=0.559 (0.387%), neg=0, invalid=766 0216: dt=43.016393, rms=0.558 (0.288%), neg=0, invalid=766 0217: dt=145.152000, rms=0.557 (0.156%), neg=0, invalid=766 0218: dt=43.428571, rms=0.556 (0.142%), neg=0, invalid=766 0219: dt=36.288000, rms=0.556 (0.048%), neg=0, invalid=766 0220: dt=36.288000, rms=0.555 (0.064%), neg=0, invalid=766 0221: dt=36.288000, rms=0.555 (0.098%), neg=0, invalid=766 0222: dt=36.288000, rms=0.554 (0.125%), neg=0, invalid=766 0223: dt=36.288000, rms=0.553 (0.153%), neg=0, invalid=766 0224: dt=36.288000, rms=0.552 (0.187%), neg=0, invalid=766 0225: dt=36.288000, rms=0.551 (0.203%), neg=0, invalid=766 0226: dt=36.288000, rms=0.550 (0.204%), neg=0, invalid=766 0227: dt=36.288000, rms=0.549 (0.195%), neg=0, invalid=766 0228: dt=36.288000, rms=0.548 (0.201%), neg=0, invalid=766 0229: dt=36.288000, rms=0.547 (0.207%), neg=0, invalid=766 0230: dt=36.288000, rms=0.545 (0.196%), neg=0, invalid=766 0231: dt=36.288000, rms=0.544 (0.191%), neg=0, invalid=766 0232: dt=36.288000, rms=0.543 (0.181%), neg=0, invalid=766 0233: dt=36.288000, rms=0.543 (0.177%), neg=0, invalid=766 0234: dt=36.288000, rms=0.542 (0.170%), neg=0, invalid=766 0235: dt=36.288000, rms=0.541 (0.160%), neg=0, invalid=766 0236: dt=36.288000, rms=0.540 (0.149%), neg=0, invalid=766 0237: dt=36.288000, rms=0.539 (0.138%), neg=0, invalid=766 0238: dt=36.288000, rms=0.538 (0.135%), neg=0, invalid=766 0239: dt=36.288000, rms=0.538 (0.127%), neg=0, invalid=766 0240: dt=36.288000, rms=0.537 (0.117%), neg=0, invalid=766 0241: dt=36.288000, rms=0.537 (0.106%), neg=0, invalid=766 0242: dt=36.288000, rms=0.536 (0.102%), neg=0, invalid=766 0243: dt=36.288000, rms=0.535 (0.105%), neg=0, invalid=766 0244: dt=36.288000, rms=0.535 (0.096%), neg=0, invalid=766 0245: dt=36.288000, rms=0.534 (0.085%), neg=0, invalid=766 0246: dt=36.288000, rms=0.534 (0.080%), neg=0, invalid=766 0247: dt=36.288000, rms=0.534 (0.082%), neg=0, invalid=766 0248: dt=36.288000, rms=0.533 (0.081%), neg=0, invalid=766 0249: dt=36.288000, rms=0.533 (0.073%), neg=0, invalid=766 0250: dt=36.288000, rms=0.532 (0.068%), neg=0, invalid=766 0251: dt=36.288000, rms=0.532 (0.067%), neg=0, invalid=766 0252: dt=36.288000, rms=0.532 (0.063%), neg=0, invalid=766 0253: dt=36.288000, rms=0.531 (0.058%), neg=0, invalid=766 0254: dt=36.288000, rms=0.531 (0.055%), neg=0, invalid=766 0255: dt=36.288000, rms=0.531 (0.050%), neg=0, invalid=766 0256: dt=36.288000, rms=0.531 (0.054%), neg=0, invalid=766 0257: dt=36.288000, rms=0.530 (0.051%), neg=0, invalid=766 0258: dt=36.288000, rms=0.530 (0.051%), neg=0, invalid=766 0259: dt=36.288000, rms=0.530 (0.044%), neg=0, invalid=766 0260: dt=36.288000, rms=0.530 (0.042%), neg=0, invalid=766 0261: dt=36.288000, rms=0.529 (0.046%), neg=0, invalid=766 0262: dt=36.288000, rms=0.529 (0.048%), neg=0, invalid=766 0263: dt=36.288000, rms=0.529 (0.041%), neg=0, invalid=766 0264: dt=36.288000, rms=0.529 (0.038%), neg=0, invalid=766 0265: dt=36.288000, rms=0.529 (0.033%), neg=0, invalid=766 0266: dt=36.288000, rms=0.528 (0.037%), neg=0, invalid=766 0267: dt=36.288000, rms=0.528 (0.039%), neg=0, invalid=766 0268: dt=36.288000, rms=0.528 (0.043%), neg=0, invalid=766 0269: dt=36.288000, rms=0.528 (0.037%), neg=0, invalid=766 0270: dt=36.288000, rms=0.527 (0.037%), neg=0, invalid=766 0271: dt=36.288000, rms=0.527 (0.033%), neg=0, invalid=766 0272: dt=36.288000, rms=0.527 (0.038%), neg=0, invalid=766 0273: dt=36.288000, rms=0.527 (0.034%), neg=0, invalid=766 0274: dt=36.288000, rms=0.527 (0.031%), neg=0, invalid=766 0275: dt=36.288000, rms=0.527 (0.026%), neg=0, invalid=766 0276: dt=36.288000, rms=0.526 (0.026%), neg=0, invalid=766 0277: dt=36.288000, rms=0.526 (0.029%), neg=0, invalid=766 0278: dt=36.288000, rms=0.526 (0.031%), neg=0, invalid=766 0279: dt=36.288000, rms=0.526 (0.028%), neg=0, invalid=766 0280: dt=36.288000, rms=0.526 (0.026%), neg=0, invalid=766 0281: dt=36.288000, rms=0.526 (0.024%), neg=0, invalid=766 0282: dt=36.288000, rms=0.526 (0.027%), neg=0, invalid=766 0283: dt=36.288000, rms=0.525 (0.028%), neg=0, invalid=766 0284: dt=36.288000, rms=0.525 (0.029%), neg=0, invalid=766 0285: dt=36.288000, rms=0.525 (0.027%), neg=0, invalid=766 0286: dt=36.288000, rms=0.525 (0.026%), neg=0, invalid=766 0287: dt=36.288000, rms=0.525 (0.025%), neg=0, invalid=766 0288: dt=36.288000, rms=0.525 (0.024%), neg=0, invalid=766 0289: dt=7.776000, rms=0.525 (0.000%), neg=0, invalid=766 0290: dt=7.776000, rms=0.525 (0.000%), neg=0, invalid=766 0291: dt=7.776000, rms=0.525 (0.000%), neg=0, invalid=766 0292: dt=7.776000, rms=0.525 (0.000%), neg=0, invalid=766 0293: dt=7.776000, rms=0.525 (0.001%), neg=0, invalid=766 0294: dt=7.776000, rms=0.525 (0.002%), neg=0, invalid=766 0295: dt=7.776000, rms=0.525 (0.002%), neg=0, invalid=766 0296: dt=7.776000, rms=0.525 (0.002%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.525, neg=0, invalid=766 0297: dt=112.872727, rms=0.523 (0.252%), neg=0, invalid=766 0298: dt=36.288000, rms=0.523 (0.031%), neg=0, invalid=766 0299: dt=36.288000, rms=0.523 (0.035%), neg=0, invalid=766 0300: dt=36.288000, rms=0.523 (0.037%), neg=0, invalid=766 0301: dt=36.288000, rms=0.523 (0.038%), neg=0, invalid=766 0302: dt=36.288000, rms=0.522 (0.043%), neg=0, invalid=766 0303: dt=36.288000, rms=0.522 (0.051%), neg=0, invalid=766 0304: dt=36.288000, rms=0.522 (0.044%), neg=0, invalid=766 0305: dt=36.288000, rms=0.522 (0.027%), neg=0, invalid=766 0306: dt=36.288000, rms=0.522 (0.020%), neg=0, invalid=766 0307: dt=36.288000, rms=0.522 (0.021%), neg=0, invalid=766 0308: dt=36.288000, rms=0.521 (0.034%), neg=0, invalid=766 0309: dt=36.288000, rms=0.521 (0.055%), neg=0, invalid=766 0310: dt=36.288000, rms=0.521 (0.048%), neg=0, invalid=766 0311: dt=36.288000, rms=0.521 (0.049%), neg=0, invalid=766 0312: dt=36.288000, rms=0.520 (0.044%), neg=0, invalid=766 0313: dt=36.288000, rms=0.520 (0.061%), neg=0, invalid=766 0314: dt=36.288000, rms=0.520 (0.053%), neg=0, invalid=766 0315: dt=36.288000, rms=0.520 (0.041%), neg=0, invalid=766 0316: dt=36.288000, rms=0.519 (0.036%), neg=0, invalid=766 0317: dt=36.288000, rms=0.519 (0.030%), neg=0, invalid=766 0318: dt=36.288000, rms=0.519 (0.033%), neg=0, invalid=766 0319: dt=36.288000, rms=0.519 (0.031%), neg=0, invalid=766 0320: dt=36.288000, rms=0.519 (0.023%), neg=0, invalid=766 0321: dt=36.288000, rms=0.519 (0.025%), neg=0, invalid=766 0322: dt=36.288000, rms=0.519 (0.016%), neg=0, invalid=766 0323: dt=145.152000, rms=0.518 (0.039%), neg=0, invalid=766 0324: dt=2.268000, rms=0.518 (-0.006%), neg=0, invalid=766 setting smoothness coefficient to 0.12 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.529, neg=0, invalid=766 0325: dt=29.200000, rms=0.527 (0.312%), neg=0, invalid=766 0326: dt=54.550336, rms=0.524 (0.634%), neg=0, invalid=766 0327: dt=24.101266, rms=0.522 (0.306%), neg=0, invalid=766 0328: dt=25.600000, rms=0.520 (0.380%), neg=0, invalid=766 0329: dt=16.228571, rms=0.519 (0.222%), neg=0, invalid=766 0330: dt=38.400000, rms=0.518 (0.245%), neg=0, invalid=766 0331: dt=17.263158, rms=0.517 (0.250%), neg=0, invalid=766 0332: dt=32.000000, rms=0.515 (0.236%), neg=0, invalid=766 0333: dt=14.048780, rms=0.515 (0.171%), neg=0, invalid=766 0334: dt=38.400000, rms=0.514 (0.161%), neg=0, invalid=766 0335: dt=23.783784, rms=0.512 (0.269%), neg=0, invalid=766 0336: dt=11.200000, rms=0.512 (0.073%), neg=0, invalid=766 0337: dt=128.000000, rms=0.509 (0.488%), neg=0, invalid=766 0338: dt=24.181818, rms=0.508 (0.207%), neg=0, invalid=766 0339: dt=29.350318, rms=0.507 (0.236%), neg=0, invalid=766 0340: dt=11.200000, rms=0.507 (0.054%), neg=0, invalid=766 0341: dt=179.200000, rms=0.505 (0.449%), neg=0, invalid=766 0342: dt=20.480000, rms=0.504 (0.204%), neg=0, invalid=766 0343: dt=25.600000, rms=0.503 (0.092%), neg=0, invalid=766 0344: dt=12.235294, rms=0.503 (0.063%), neg=0, invalid=766 0345: dt=38.400000, rms=0.503 (0.047%), neg=0, invalid=766 0346: dt=19.200000, rms=0.502 (0.062%), neg=0, invalid=766 0347: dt=19.200000, rms=0.502 (0.100%), neg=0, invalid=766 0348: dt=19.200000, rms=0.502 (0.055%), neg=0, invalid=766 0349: dt=19.200000, rms=0.501 (0.171%), neg=0, invalid=766 0350: dt=19.200000, rms=0.500 (0.163%), neg=0, invalid=766 0351: dt=19.200000, rms=0.499 (0.192%), neg=0, invalid=766 0352: dt=19.200000, rms=0.498 (0.090%), neg=0, invalid=766 0353: dt=19.200000, rms=0.497 (0.214%), neg=0, invalid=766 0354: dt=19.200000, rms=0.496 (0.177%), neg=0, invalid=766 0355: dt=19.200000, rms=0.496 (0.193%), neg=0, invalid=766 0356: dt=19.200000, rms=0.495 (0.075%), neg=0, invalid=766 0357: dt=19.200000, rms=0.494 (0.157%), neg=0, invalid=766 0358: dt=19.200000, rms=0.493 (0.204%), neg=0, invalid=766 0359: dt=19.200000, rms=0.493 (0.144%), neg=0, invalid=766 0360: dt=19.200000, rms=0.493 (0.031%), neg=0, invalid=766 0361: dt=19.200000, rms=0.492 (0.138%), neg=0, invalid=766 0362: dt=19.200000, rms=0.491 (0.170%), neg=0, invalid=766 0363: dt=19.200000, rms=0.491 (0.091%), neg=0, invalid=766 0364: dt=19.200000, rms=0.491 (-0.008%), neg=0, invalid=766 0365: dt=5.454545, rms=0.490 (0.010%), neg=0, invalid=766 0366: dt=2.000000, rms=0.490 (0.002%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.490, neg=0, invalid=766 0367: dt=25.806452, rms=0.490 (0.171%), neg=0, invalid=766 0368: dt=12.000000, rms=0.489 (0.064%), neg=0, invalid=766 0369: dt=9.600000, rms=0.489 (0.005%), neg=0, invalid=766 0370: dt=9.600000, rms=0.489 (0.020%), neg=0, invalid=766 0371: dt=9.600000, rms=0.489 (0.014%), neg=0, invalid=766 0372: dt=9.600000, rms=0.489 (0.008%), neg=0, invalid=766 0373: dt=44.800000, rms=0.489 (0.024%), neg=0, invalid=766 0374: dt=6.153846, rms=0.489 (-0.003%), neg=0, invalid=766 setting smoothness coefficient to 0.40 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.517, neg=0, invalid=766 0375: dt=0.000000, rms=0.517 (0.000%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.517, neg=0, invalid=766 0376: dt=0.000000, rms=0.517 (0.000%), neg=0, invalid=766 setting smoothness coefficient to 1.00 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.571, neg=0, invalid=766 0377: dt=1.834375, rms=0.562 (1.445%), neg=0, invalid=766 0378: dt=0.928571, rms=0.562 (0.125%), neg=0, invalid=766 0379: dt=0.384000, rms=0.562 (0.013%), neg=0, invalid=766 0380: dt=0.384000, rms=0.562 (-0.002%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.562, neg=0, invalid=766 0381: dt=1.585714, rms=0.560 (0.251%), neg=0, invalid=766 0382: dt=0.771429, rms=0.560 (0.031%), neg=0, invalid=766 0383: dt=0.771429, rms=0.560 (-0.003%), neg=0, invalid=766 resetting metric properties... setting smoothness coefficient to 2.00 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.518, neg=0, invalid=766 0384: dt=0.153602, rms=0.513 (0.997%), neg=0, invalid=766 0385: dt=0.133621, rms=0.509 (0.630%), neg=0, invalid=766 0386: dt=0.080000, rms=0.508 (0.293%), neg=0, invalid=766 0387: dt=0.080000, rms=0.507 (0.255%), neg=0, invalid=766 0388: dt=0.112939, rms=0.505 (0.318%), neg=0, invalid=766 0389: dt=0.320000, rms=0.501 (0.748%), neg=0, invalid=766 0390: dt=0.112000, rms=0.500 (0.153%), neg=0, invalid=766 0391: dt=0.320000, rms=0.499 (0.382%), neg=0, invalid=766 0392: dt=0.028000, rms=0.498 (0.025%), neg=0, invalid=766 0393: dt=0.028000, rms=0.498 (0.023%), neg=0, invalid=766 0394: dt=0.028000, rms=0.498 (0.044%), neg=0, invalid=766 0395: dt=0.028000, rms=0.498 (0.061%), neg=0, invalid=766 0396: dt=0.028000, rms=0.497 (0.074%), neg=0, invalid=766 0397: dt=0.028000, rms=0.497 (0.087%), neg=0, invalid=766 0398: dt=0.028000, rms=0.496 (0.095%), neg=0, invalid=766 0399: dt=0.028000, rms=0.496 (0.100%), neg=0, invalid=766 0400: dt=0.028000, rms=0.495 (0.104%), neg=0, invalid=766 0401: dt=0.028000, rms=0.495 (0.105%), neg=0, invalid=766 0402: dt=0.028000, rms=0.494 (0.103%), neg=0, invalid=766 0403: dt=0.028000, rms=0.494 (0.099%), neg=0, invalid=766 0404: dt=0.028000, rms=0.493 (0.096%), neg=0, invalid=766 0405: dt=0.028000, rms=0.493 (0.092%), neg=0, invalid=766 0406: dt=0.028000, rms=0.493 (0.086%), neg=0, invalid=766 0407: dt=0.028000, rms=0.492 (0.080%), neg=0, invalid=766 0408: dt=0.028000, rms=0.492 (0.073%), neg=0, invalid=766 0409: dt=0.028000, rms=0.492 (0.067%), neg=0, invalid=766 0410: dt=0.028000, rms=0.491 (0.061%), neg=0, invalid=766 0411: dt=0.028000, rms=0.491 (0.054%), neg=0, invalid=766 0412: dt=0.028000, rms=0.491 (0.047%), neg=0, invalid=766 0413: dt=0.028000, rms=0.490 (0.045%), neg=0, invalid=766 0414: dt=0.028000, rms=0.490 (0.040%), neg=0, invalid=766 0415: dt=0.028000, rms=0.490 (0.034%), neg=0, invalid=766 0416: dt=0.028000, rms=0.490 (0.033%), neg=0, invalid=766 0417: dt=0.028000, rms=0.490 (0.027%), neg=0, invalid=766 0418: dt=0.028000, rms=0.490 (0.023%), neg=0, invalid=766 0419: dt=0.028000, rms=0.490 (0.021%), neg=0, invalid=766 0420: dt=0.112000, rms=0.490 (0.002%), neg=0, invalid=766 0421: dt=0.112000, rms=0.490 (-0.001%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.490, neg=0, invalid=766 0422: dt=0.112000, rms=0.488 (0.240%), neg=0, invalid=766 0423: dt=0.112000, rms=0.488 (0.177%), neg=0, invalid=766 0424: dt=0.112000, rms=0.487 (0.129%), neg=0, invalid=766 0425: dt=0.112000, rms=0.486 (0.097%), neg=0, invalid=766 0426: dt=0.112000, rms=0.486 (0.071%), neg=0, invalid=766 0427: dt=0.112000, rms=0.486 (0.052%), neg=0, invalid=766 0428: dt=0.320000, rms=0.485 (0.110%), neg=0, invalid=766 0429: dt=0.028000, rms=0.485 (0.003%), neg=0, invalid=766 0430: dt=0.028000, rms=0.485 (0.002%), neg=0, invalid=766 0431: dt=0.028000, rms=0.485 (0.005%), neg=0, invalid=766 0432: dt=0.028000, rms=0.485 (0.006%), neg=0, invalid=766 0433: dt=0.028000, rms=0.485 (0.008%), neg=0, invalid=766 0434: dt=0.028000, rms=0.485 (0.007%), neg=0, invalid=766 0435: dt=0.028000, rms=0.485 (0.000%), neg=0, invalid=766 0436: dt=0.112000, rms=0.485 (0.002%), neg=0, invalid=766 0437: dt=1.280000, rms=0.485 (0.010%), neg=0, invalid=766 0438: dt=0.001750, rms=0.485 (-0.002%), neg=0, invalid=766 label assignment complete, 0 changed (0.00%) ***************** morphing with label term set to 0 ******************************* label assignment complete, 0 changed (0.00%) **************** pass 1 of 1 ************************ setting smoothness coefficient to 0.01 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.483, neg=0, invalid=766 0439: dt=0.000000, rms=0.483 (-0.135%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.483, neg=0, invalid=766 0440: dt=129.472000, rms=0.483 (0.105%), neg=0, invalid=766 0441: dt=295.936000, rms=0.482 (0.078%), neg=0, invalid=766 0442: dt=92.480000, rms=0.482 (0.048%), neg=0, invalid=766 0443: dt=92.480000, rms=0.482 (0.025%), neg=0, invalid=766 0444: dt=92.480000, rms=0.482 (0.026%), neg=0, invalid=766 0445: dt=92.480000, rms=0.482 (0.033%), neg=0, invalid=766 0446: dt=92.480000, rms=0.482 (0.027%), neg=0, invalid=766 0447: dt=92.480000, rms=0.481 (0.036%), neg=0, invalid=766 0448: dt=92.480000, rms=0.481 (0.036%), neg=0, invalid=766 0449: dt=92.480000, rms=0.481 (0.028%), neg=0, invalid=766 0450: dt=92.480000, rms=0.481 (0.023%), neg=0, invalid=766 0451: dt=92.480000, rms=0.481 (0.019%), neg=0, invalid=766 0452: dt=129.472000, rms=0.481 (0.014%), neg=0, invalid=766 0453: dt=129.472000, rms=0.481 (0.001%), neg=0, invalid=766 0454: dt=129.472000, rms=0.481 (0.013%), neg=0, invalid=766 0455: dt=129.472000, rms=0.481 (0.022%), neg=0, invalid=766 0456: dt=129.472000, rms=0.481 (0.019%), neg=0, invalid=766 0457: dt=129.472000, rms=0.481 (0.010%), neg=0, invalid=766 setting smoothness coefficient to 0.03 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.481, neg=0, invalid=766 0458: dt=40.421053, rms=0.480 (0.106%), neg=0, invalid=766 0459: dt=36.288000, rms=0.480 (0.103%), neg=0, invalid=766 0460: dt=31.104000, rms=0.479 (0.078%), neg=0, invalid=766 0461: dt=1.944000, rms=0.479 (0.005%), neg=0, invalid=766 0462: dt=0.243000, rms=0.479 (0.001%), neg=0, invalid=766 0463: dt=0.015187, rms=0.479 (0.000%), neg=0, invalid=766 0464: dt=0.007594, rms=0.479 (0.000%), neg=0, invalid=766 0465: dt=0.000000, rms=0.479 (0.000%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.479, neg=0, invalid=766 0466: dt=119.341176, rms=0.477 (0.486%), neg=0, invalid=766 0467: dt=25.920000, rms=0.476 (0.130%), neg=0, invalid=766 0468: dt=0.035437, rms=0.476 (0.000%), neg=0, invalid=766 0469: dt=0.017719, rms=0.476 (0.000%), neg=0, invalid=766 0470: dt=0.000554, rms=0.476 (0.000%), neg=0, invalid=766 0471: dt=0.000277, rms=0.476 (0.000%), neg=0, invalid=766 0472: dt=0.000000, rms=0.476 (0.000%), neg=0, invalid=766 setting smoothness coefficient to 0.12 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.476, neg=0, invalid=766 0473: dt=0.000000, rms=0.476 (0.000%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.476, neg=0, invalid=766 0474: dt=0.000000, rms=0.476 (0.000%), neg=0, invalid=766 setting smoothness coefficient to 0.40 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.477, neg=0, invalid=766 0475: dt=4.032000, rms=0.470 (1.433%), neg=0, invalid=766 0476: dt=2.880000, rms=0.467 (0.713%), neg=0, invalid=766 0477: dt=0.252000, rms=0.467 (0.051%), neg=0, invalid=766 0478: dt=0.063000, rms=0.467 (0.013%), neg=0, invalid=766 0479: dt=0.031500, rms=0.467 (0.006%), neg=0, invalid=766 0480: dt=0.007875, rms=0.467 (0.002%), neg=0, invalid=766 0481: dt=0.000984, rms=0.467 (0.000%), neg=0, invalid=766 0482: dt=0.000703, rms=0.467 (0.000%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.467, neg=0, invalid=766 0483: dt=0.000000, rms=0.467 (0.000%), neg=0, invalid=766 setting smoothness coefficient to 1.00 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.470, neg=0, invalid=766 0484: dt=0.000000, rms=0.470 (0.000%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.470, neg=0, invalid=766 0485: dt=0.000000, rms=0.470 (0.000%), neg=0, invalid=766 resetting metric properties... setting smoothness coefficient to 2.00 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.465, neg=0, invalid=766 0486: dt=0.000000, rms=0.465 (0.000%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.465, neg=0, invalid=766 0487: dt=0.000000, rms=0.465 (0.000%), neg=0, invalid=766 writing output transformation to transforms/talairach.m3z... registration took 5 hours, 30 minutes and 16 seconds. #-------------------------------------- #@# CA Reg Inv Tue Sep 16 00:25:42 CEST 2008 /home/neuro/joost/redes/maranon/freesurfer/28646/mri mri_ca_register -invert-and-save transforms/talairach.m3z Loading, Inverting, Saving, Exiting ... Reading transforms/talairach.m3z zcat transforms/talairach.m3z Inverting GCAM Saving inverse #-------------------------------------- #@# Remove Neck Tue Sep 16 00:26:59 CEST 2008 mri_remove_neck -radius 25 nu.mgz transforms/talairach.m3z /usr/local/freesurfer/average/RB_all_2008-03-26.gca nu_noneck.mgz erasing everything more than 25 mm from possible brain reading atlas '/usr/local/freesurfer/average/RB_all_2008-03-26.gca'... reading input volume 'nu.mgz'... reading transform 'transforms/talairach.m3z'... zcat transforms/talairach.m3z removing structures at least 25 mm from brain... 11553790 nonbrain voxels erased writing output to nu_noneck.mgz... nonbrain removal took 1 minutes and 39 seconds. #-------------------------------------- #@# SkullLTA Tue Sep 16 00:28:38 CEST 2008 mri_em_register -skull -t transforms/talairach.lta nu_noneck.mgz /usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull.lta aligning to atlas containing skull, setting unknown_nbr_spacing = 5 using previously computed transform transforms/talairach.lta reading 1 input volumes... logging results to talairach_with_skull.log reading '/usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca'... average std = 23.1 using min determinant for regularization = 53.4 0 singular and 5702 ill-conditioned covariance matrices regularized reading 'nu_noneck.mgz'... freeing gibbs priors...done. bounding unknown intensity as < 20.2 or > 943.7 total sample mean = 92.0 (1443 zeros) ************************************************ spacing=8, using 3481 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 3481, passno 0, spacing 8 resetting wm mean[0]: 117 --> 126 resetting gm mean[0]: 74 --> 74 input volume #1 is the most T1-like using real data threshold=6.0 using (104, 105, 119) as brain centroid... mean wm in atlas = 126, using box (85,86,96) --> (123, 123,142) to find MRI wm before smoothing, mri peak at 119 after smoothing, mri peak at 118, scaling input intensities by 1.068 scaling channel 0 by 1.0678 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-14045.7, old_max_log_p =-14009.1 (thresh=-13995.1) 1.077 0.007 0.006 -13.760; 0.005 1.342 0.182 -81.246; 0.004 -0.142 1.122 -0.222; 0.000 0.000 0.000 1.000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 1 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-13763.3, old_max_log_p =-14045.7 (thresh=-14031.7) 1.110 0.007 0.006 -19.995; 0.005 1.280 0.173 -73.734; 0.004 -0.139 1.104 -0.385; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 2 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-13714.7, old_max_log_p =-13763.3 (thresh=-13749.5) 1.059 0.007 0.005 -13.234; 0.005 1.280 0.173 -73.734; 0.004 -0.139 1.104 -0.385; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-13714.7, old_max_log_p =-13714.7 (thresh=-13701.0) 1.059 0.007 0.005 -13.234; 0.005 1.280 0.173 -73.734; 0.004 -0.139 1.104 -0.385; 0.000 0.000 0.000 1.000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 4 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-13624.8, old_max_log_p =-13714.7 (thresh=-13701.0) 1.059 0.007 0.005 -13.234; 0.005 1.295 0.175 -75.551; 0.004 -0.140 1.108 -1.263; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-13624.8, old_max_log_p =-13624.8 (thresh=-13611.2) 1.059 0.007 0.005 -13.234; 0.005 1.295 0.175 -75.551; 0.004 -0.140 1.108 -1.263; 0.000 0.000 0.000 1.000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 3481 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.05898 0.00675 0.00547 -13.23407; 0.00472 1.29514 0.17535 -75.55089; 0.00425 -0.13984 1.10817 -1.26253; 0.00000 0.00000 0.00000 1.00000; nsamples 3481 Quasinewton: input matrix 1.05898 0.00675 0.00547 -13.23407; 0.00472 1.29514 0.17535 -75.55089; 0.00425 -0.13984 1.10817 -1.26253; 0.00000 0.00000 0.00000 1.00000; v3p/netlib/opt/lbfgs.c: lb3_1.lp > 0 outof QuasiNewtonEMA: 006: -log(p) = 13624.8 tol 0.000010 Resulting transform: 1.059 0.007 0.005 -13.234; 0.005 1.295 0.175 -75.551; 0.004 -0.140 1.108 -1.263; 0.000 0.000 0.000 1.000; pass 1, spacing 8: log(p) = -13624.8 (old=-14009.1) transform before final EM align: 1.059 0.007 0.005 -13.234; 0.005 1.295 0.175 -75.551; 0.004 -0.140 1.108 -1.263; 0.000 0.000 0.000 1.000; ************************************************** EM alignment process ... Computing final MAP estimate using 382743 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.05898 0.00675 0.00547 -13.23407; 0.00472 1.29514 0.17535 -75.55089; 0.00425 -0.13984 1.10817 -1.26253; 0.00000 0.00000 0.00000 1.00000; nsamples 382743 Quasinewton: input matrix 1.05898 0.00675 0.00547 -13.23407; 0.00472 1.29514 0.17535 -75.55089; 0.00425 -0.13984 1.10817 -1.26253; 0.00000 0.00000 0.00000 1.00000; dfp_em_step_func: 005: -log(p) = 1819704.1 after pass:transform: ( 1.06, 0.01, 0.01, -13.23) ( 0.01, 1.30, 0.18, -75.55) ( 0.01, -0.13, 1.11, -1.26) v3p/netlib/opt/lbfgs.c: lb3_1.lp > 0 pass 2 through quasi-newton minimization... v3p/netlib/opt/lbfgs.c: lb3_1.lp > 0 outof QuasiNewtonEMA: 007: -log(p) = 1819704.1 tol 0.000000 final transform: 1.062 0.008 0.006 -13.234; 0.009 1.296 0.183 -75.551; 0.011 -0.130 1.113 -1.263; 0.000 0.000 0.000 1.000; writing output transformation to transforms/talairach_with_skull.lta... registration took 16 minutes and 30 seconds. #-------------------------------------- #@# SubCort Seg Tue Sep 16 00:45:08 CEST 2008 mri_ca_label -align -nobigventricles norm.mgz transforms/talairach.m3z /usr/local/freesurfer/average/RB_all_2008-03-26.gca aseg.auto_noCCseg.mgz renormalizing sequences with structure alignment, equivalent to: -renormalize -renormalize_mean 0.500 -regularize 0.500 not handling expanded ventricles... reading 1 input volumes... reading classifier array from /usr/local/freesurfer/average/RB_all_2008-03-26.gca... reading input volume from norm.mgz... average std[0] = 6.9 reading transform from transforms/talairach.m3z... zcat transforms/talairach.m3z Atlas used for the 3D morph was /usr/local/freesurfer/average/RB_all_2008-03-26.gca average std = 6.9 using min determinant for regularization = 4.7 0 singular and 0 ill-conditioned covariance matrices regularized labeling volume... renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.15151 (27) mri peak = 0.05498 (21) Left_Lateral_Ventricle (4): linear fit = 0.82 x + 0.0 (1140 voxels, overlap=0.849) Left_Lateral_Ventricle (4): linear fit = 0.82 x + 0.0 (1140 voxels, peak = 22), gca=22.3 gca peak = 0.14982 (20) mri peak = 0.07185 (21) Right_Lateral_Ventricle (43): linear fit = 0.95 x + 0.0 (1252 voxels, overlap=0.833) Right_Lateral_Ventricle (43): linear fit = 0.95 x + 0.0 (1252 voxels, peak = 19), gca=19.0 gca peak = 0.28003 (97) mri peak = 0.10466 (101) Right_Pallidum (52): linear fit = 1.02 x + 0.0 (431 voxels, overlap=1.000) Right_Pallidum (52): linear fit = 1.02 x + 0.0 (431 voxels, peak = 99), gca=99.4 gca peak = 0.18160 (96) mri peak = 0.05513 (103) Left_Pallidum (13): linear fit = 1.08 x + 0.0 (447 voxels, overlap=0.685) Left_Pallidum (13): linear fit = 1.08 x + 0.0 (447 voxels, peak = 103), gca=103.2 gca peak = 0.27536 (62) mri peak = 0.08662 (72) Right_Hippocampus (53): linear fit = 1.15 x + 0.0 (1133 voxels, overlap=0.398) Right_Hippocampus (53): linear fit = 1.15 x + 0.0 (1133 voxels, peak = 71), gca=71.3 gca peak = 0.32745 (63) mri peak = 0.06970 (74) Left_Hippocampus (17): linear fit = 1.15 x + 0.0 (1224 voxels, overlap=0.390) Left_Hippocampus (17): linear fit = 1.15 x + 0.0 (1224 voxels, peak = 72), gca=72.4 gca peak = 0.08597 (105) mri peak = 0.07767 (109) Right_Cerebral_White_Matter (41): linear fit = 1.05 x + 0.0 (33202 voxels, overlap=0.558) Right_Cerebral_White_Matter (41): linear fit = 1.05 x + 0.0 (33202 voxels, peak = 110), gca=110.2 gca peak = 0.09209 (106) mri peak = 0.07352 (109) Left_Cerebral_White_Matter (2): linear fit = 1.05 x + 0.0 (37463 voxels, overlap=0.613) Left_Cerebral_White_Matter (2): linear fit = 1.05 x + 0.0 (37463 voxels, peak = 111), gca=111.3 gca peak = 0.07826 (63) mri peak = 0.03430 (77) Left_Cerebral_Cortex (3): linear fit = 1.20 x + 0.0 (73351 voxels, overlap=0.143) Left_Cerebral_Cortex (3): linear fit = 1.20 x + 0.0 (73351 voxels, peak = 76), gca=75.6 gca peak = 0.08598 (64) mri peak = 0.03487 (80) Right_Cerebral_Cortex (42): linear fit = 1.23 x + 0.0 (74762 voxels, overlap=0.160) Right_Cerebral_Cortex (42): linear fit = 1.23 x + 0.0 (74762 voxels, peak = 78), gca=78.4 gca peak = 0.24164 (71) mri peak = 0.10648 (79) Right_Caudate (50): linear fit = 1.17 x + 0.0 (794 voxels, overlap=0.000) Right_Caudate (50): linear fit = 1.17 x + 0.0 (794 voxels, peak = 83), gca=83.4 gca peak = 0.18227 (75) mri peak = 0.11356 (89) Left_Caudate (11): linear fit = 1.10 x + 0.0 (703 voxels, overlap=0.516) Left_Caudate (11): linear fit = 1.10 x + 0.0 (703 voxels, peak = 82), gca=82.5 gca peak = 0.10629 (62) mri peak = 0.06830 (75) Left_Cerebellum_Cortex (8): linear fit = 1.25 x + 0.0 (35306 voxels, overlap=0.029) Left_Cerebellum_Cortex (8): linear fit = 1.25 x + 0.0 (35306 voxels, peak = 78), gca=77.5 gca peak = 0.11668 (59) mri peak = 0.06302 (73) Right_Cerebellum_Cortex (47): linear fit = 1.23 x + 0.0 (35389 voxels, overlap=0.013) Right_Cerebellum_Cortex (47): linear fit = 1.23 x + 0.0 (35389 voxels, peak = 72), gca=72.3 gca peak = 0.17849 (88) mri peak = 0.10134 (93) Left_Cerebellum_White_Matter (7): linear fit = 1.05 x + 0.0 (4947 voxels, overlap=0.920) Left_Cerebellum_White_Matter (7): linear fit = 1.05 x + 0.0 (4947 voxels, peak = 92), gca=92.4 gca peak = 0.16819 (86) mri peak = 0.12956 (91) Right_Cerebellum_White_Matter (46): linear fit = 1.05 x + 0.0 (5062 voxels, overlap=0.895) Right_Cerebellum_White_Matter (46): linear fit = 1.05 x + 0.0 (5062 voxels, peak = 90), gca=90.3 gca peak = 0.41688 (64) mri peak = 0.10612 (73) Left_Amygdala (18): linear fit = 1.15 x + 0.0 (430 voxels, overlap=0.001) Left_Amygdala (18): linear fit = 1.15 x + 0.0 (430 voxels, peak = 74), gca=73.6 gca peak = 0.42394 (62) mri peak = 0.13189 (72) Right_Amygdala (54): linear fit = 1.15 x + 0.0 (413 voxels, overlap=0.000) Right_Amygdala (54): linear fit = 1.15 x + 0.0 (413 voxels, peak = 71), gca=71.3 gca peak = 0.10041 (96) mri peak = 0.07243 (94) Left_Thalamus_Proper (10): linear fit = 0.98 x + 0.0 (3612 voxels, overlap=0.945) Left_Thalamus_Proper (10): linear fit = 0.98 x + 0.0 (3612 voxels, peak = 94), gca=93.6 gca peak = 0.13978 (88) mri peak = 0.09174 (93) Right_Thalamus_Proper (49): linear fit = 1.05 x + 0.0 (3735 voxels, overlap=0.823) Right_Thalamus_Proper (49): linear fit = 1.05 x + 0.0 (3735 voxels, peak = 92), gca=92.4 gca peak = 0.08514 (81) mri peak = 0.09861 (90) Left_Putamen (12): linear fit = 1.05 x + 0.0 (2329 voxels, overlap=0.740) Left_Putamen (12): linear fit = 1.05 x + 0.0 (2329 voxels, peak = 85), gca=85.0 gca peak = 0.09624 (82) mri peak = 0.09310 (90) Right_Putamen (51): linear fit = 1.05 x + 0.0 (2261 voxels, overlap=0.687) Right_Putamen (51): linear fit = 1.05 x + 0.0 (2261 voxels, peak = 86), gca=86.1 gca peak = 0.07543 (88) mri peak = 0.06778 (93) Brain_Stem (16): linear fit = 1.02 x + 0.0 (12001 voxels, overlap=0.795) Brain_Stem (16): linear fit = 1.02 x + 0.0 (12001 voxels, peak = 90), gca=90.2 gca peak = 0.12757 (95) mri peak = 0.07692 (93) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (1468 voxels, overlap=0.782) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (1468 voxels, peak = 95), gca=95.0 gca peak = 0.17004 (92) mri peak = 0.07728 (104) Left_VentralDC (28): linear fit = 1.05 x + 0.0 (1337 voxels, overlap=0.872) Left_VentralDC (28): linear fit = 1.05 x + 0.0 (1337 voxels, peak = 97), gca=96.6 gca peak = 0.21361 (36) mri peak = 0.07444 (30) Third_Ventricle (14): linear fit = 0.77 x + 0.0 (107 voxels, overlap=0.286) Third_Ventricle (14): linear fit = 0.77 x + 0.0 (107 voxels, peak = 28), gca=27.9 gca peak = 0.26069 (23) mri peak = 0.10396 (21) Fourth_Ventricle (15): linear fit = 0.88 x + 0.0 (408 voxels, overlap=0.858) Fourth_Ventricle (15): linear fit = 0.88 x + 0.0 (408 voxels, peak = 20), gca=20.1 gca peak Unknown = 0.94427 ( 0) gca peak Left_Inf_Lat_Vent = 0.31795 (35) gca peak CSF = 0.14367 (38) gca peak Left_Accumbens_area = 0.57033 (70) gca peak Left_undetermined = 1.00000 (35) gca peak Left_vessel = 0.65201 (62) gca peak Left_choroid_plexus = 0.09084 (48) gca peak Right_Inf_Lat_Vent = 0.31129 (32) gca peak Right_Accumbens_area = 0.30219 (72) gca peak Right_vessel = 0.83418 (60) gca peak Right_choroid_plexus = 0.10189 (48) gca peak Fifth_Ventricle = 0.72939 (42) gca peak WM_hypointensities = 0.14821 (82) gca peak non_WM_hypointensities = 0.10354 (53) gca peak Optic_Chiasm = 0.34849 (76) not using caudate to estimate GM means estimating mean gm scale to be 1.17 x + 0.0 estimating mean wm scale to be 1.05 x + 0.0 estimating mean csf scale to be 0.86 x + 0.0 renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.14514 (23) mri peak = 0.05498 (21) Left_Lateral_Ventricle (4): linear fit = 1.08 x + 0.0 (1140 voxels, overlap=0.972) Left_Lateral_Ventricle (4): linear fit = 1.08 x + 0.0 (1140 voxels, peak = 25), gca=24.7 gca peak = 0.15050 (19) mri peak = 0.07185 (21) Right_Lateral_Ventricle (43): linear fit = 1.08 x + 0.0 (1252 voxels, overlap=0.928) Right_Lateral_Ventricle (43): linear fit = 1.08 x + 0.0 (1252 voxels, peak = 20), gca=20.4 gca peak = 0.30362 (100) mri peak = 0.10466 (101) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (431 voxels, overlap=1.000) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (431 voxels, peak = 100), gca=100.0 gca peak = 0.15634 (102) mri peak = 0.05513 (103) Left_Pallidum (13): linear fit = 1.00 x + 0.0 (447 voxels, overlap=0.867) Left_Pallidum (13): linear fit = 1.00 x + 0.0 (447 voxels, peak = 102), gca=102.0 gca peak = 0.25063 (71) mri peak = 0.08662 (72) Right_Hippocampus (53): linear fit = 1.00 x + 0.0 (1133 voxels, overlap=0.991) Right_Hippocampus (53): linear fit = 1.00 x + 0.0 (1133 voxels, peak = 71), gca=71.0 gca peak = 0.26098 (72) mri peak = 0.06970 (74) Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (1224 voxels, overlap=1.000) Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (1224 voxels, peak = 72), gca=72.0 gca peak = 0.08007 (112) mri peak = 0.07767 (109) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (33202 voxels, overlap=0.738) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (33202 voxels, peak = 112), gca=112.0 gca peak = 0.08789 (111) mri peak = 0.07352 (109) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (37463 voxels, overlap=0.753) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (37463 voxels, peak = 111), gca=111.0 gca peak = 0.06470 (76) mri peak = 0.03430 (77) Left_Cerebral_Cortex (3): linear fit = 1.00 x + 0.0 (73351 voxels, overlap=0.788) Left_Cerebral_Cortex (3): linear fit = 1.00 x + 0.0 (73351 voxels, peak = 76), gca=76.0 gca peak = 0.07117 (77) mri peak = 0.03487 (80) Right_Cerebral_Cortex (42): linear fit = 0.98 x + 0.0 (74762 voxels, overlap=0.774) Right_Cerebral_Cortex (42): linear fit = 0.98 x + 0.0 (74762 voxels, peak = 75), gca=75.1 gca peak = 0.21774 (83) mri peak = 0.10648 (79) Right_Caudate (50): linear fit = 0.95 x + 0.0 (794 voxels, overlap=1.000) Right_Caudate (50): linear fit = 0.95 x + 0.0 (794 voxels, peak = 79), gca=78.8 gca peak = 0.13754 (82) mri peak = 0.11356 (89) Left_Caudate (11): linear fit = 0.98 x + 0.0 (703 voxels, overlap=0.912) Left_Caudate (11): linear fit = 0.98 x + 0.0 (703 voxels, peak = 80), gca=80.0 gca peak = 0.08683 (78) mri peak = 0.06830 (75) Left_Cerebellum_Cortex (8): linear fit = 1.00 x + 0.0 (35306 voxels, overlap=0.958) Left_Cerebellum_Cortex (8): linear fit = 1.00 x + 0.0 (35306 voxels, peak = 78), gca=78.0 gca peak = 0.10426 (73) mri peak = 0.06302 (73) Right_Cerebellum_Cortex (47): linear fit = 1.00 x + 0.0 (35389 voxels, overlap=0.934) Right_Cerebellum_Cortex (47): linear fit = 1.00 x + 0.0 (35389 voxels, peak = 73), gca=73.0 gca peak = 0.16848 (92) mri peak = 0.10134 (93) Left_Cerebellum_White_Matter (7): linear fit = 1.00 x + 0.0 (4947 voxels, overlap=0.995) Left_Cerebellum_White_Matter (7): linear fit = 1.00 x + 0.0 (4947 voxels, peak = 92), gca=92.0 gca peak = 0.15998 (91) mri peak = 0.12956 (91) Right_Cerebellum_White_Matter (46): linear fit = 1.00 x + 0.0 (5062 voxels, overlap=0.996) Right_Cerebellum_White_Matter (46): linear fit = 1.00 x + 0.0 (5062 voxels, peak = 91), gca=91.0 gca peak = 0.33143 (73) mri peak = 0.10612 (73) Left_Amygdala (18): linear fit = 0.98 x + 0.0 (430 voxels, overlap=1.000) Left_Amygdala (18): linear fit = 0.98 x + 0.0 (430 voxels, peak = 71), gca=71.2 gca peak = 0.36530 (72) mri peak = 0.13189 (72) Right_Amygdala (54): linear fit = 1.00 x + 0.0 (413 voxels, overlap=0.999) Right_Amygdala (54): linear fit = 1.00 x + 0.0 (413 voxels, peak = 72), gca=72.0 gca peak = 0.10273 (92) mri peak = 0.07243 (94) Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (3612 voxels, overlap=0.994) Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (3612 voxels, peak = 92), gca=92.0 gca peak = 0.10960 (92) mri peak = 0.09174 (93) Right_Thalamus_Proper (49): linear fit = 1.00 x + 0.0 (3735 voxels, overlap=0.955) Right_Thalamus_Proper (49): linear fit = 1.00 x + 0.0 (3735 voxels, peak = 92), gca=92.0 gca peak = 0.08404 (85) mri peak = 0.09861 (90) Left_Putamen (12): linear fit = 1.00 x + 0.0 (2329 voxels, overlap=0.921) Left_Putamen (12): linear fit = 1.00 x + 0.0 (2329 voxels, peak = 85), gca=85.0 gca peak = 0.09435 (86) mri peak = 0.09310 (90) Right_Putamen (51): linear fit = 1.00 x + 0.0 (2261 voxels, overlap=0.977) Right_Putamen (51): linear fit = 1.00 x + 0.0 (2261 voxels, peak = 86), gca=86.0 gca peak = 0.07236 (87) mri peak = 0.06778 (93) Brain_Stem (16): linear fit = 1.00 x + 0.0 (12001 voxels, overlap=0.843) Brain_Stem (16): linear fit = 1.00 x + 0.0 (12001 voxels, peak = 87), gca=87.0 gca peak = 0.12416 (91) mri peak = 0.07692 (93) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (1468 voxels, overlap=0.783) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (1468 voxels, peak = 91), gca=91.0 gca peak = 0.13551 (97) mri peak = 0.07728 (104) Left_VentralDC (28): linear fit = 1.02 x + 0.0 (1337 voxels, overlap=0.907) Left_VentralDC (28): linear fit = 1.02 x + 0.0 (1337 voxels, peak = 99), gca=99.4 gca peak = 0.23154 (28) mri peak = 0.07444 (30) Third_Ventricle (14): linear fit = 1.00 x + 0.0 (107 voxels, overlap=0.802) Third_Ventricle (14): linear fit = 1.00 x + 0.0 (107 voxels, peak = 28), gca=28.0 gca peak = 0.24174 (20) mri peak = 0.10396 (21) Fourth_Ventricle (15): linear fit = 1.00 x + 0.0 (408 voxels, overlap=0.969) Fourth_Ventricle (15): linear fit = 1.00 x + 0.0 (408 voxels, peak = 20), gca=20.0 gca peak Unknown = 0.94427 ( 0) gca peak Left_Inf_Lat_Vent = 0.18244 (40) gca peak CSF = 0.26436 (33) gca peak Left_Accumbens_area = 0.61751 (77) gca peak Left_undetermined = 1.00000 (35) gca peak Left_vessel = 0.63638 (62) gca peak Left_choroid_plexus = 0.09084 (48) gca peak Right_Inf_Lat_Vent = 0.19452 (37) gca peak Right_Accumbens_area = 0.26561 (84) gca peak Right_vessel = 0.83418 (60) gca peak Right_choroid_plexus = 0.10189 (48) gca peak Fifth_Ventricle = 0.81716 (36) gca peak WM_hypointensities = 0.15457 (86) gca peak non_WM_hypointensities = 0.08849 (55) gca peak Optic_Chiasm = 0.34508 (76) not using caudate to estimate GM means estimating mean gm scale to be 0.99 x + 0.0 estimating mean wm scale to be 1.00 x + 0.0 estimating mean csf scale to be 1.04 x + 0.0 31774 gm and wm labels changed (%28 to gray, %72 to white out of all changed labels) 348 hippocampal voxels changed. 0 amygdala voxels changed. pass 1: 77854 changed. image ll: -2.157, PF=1.000 pass 2: 12847 changed. image ll: -2.154, PF=1.000 pass 3: 4397 changed. writing labeled volume to aseg.auto_noCCseg.mgz... auto-labeling took 35 minutes and 40 seconds. mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz 28646 reading input aseg from aseg.auto_noCCseg.mgz writing aseg with cc labels to aseg.auto.mgz reading aseg from /home/neuro/joost/redes/maranon/freesurfer/28646/mri/aseg.auto_noCCseg.mgz reading norm from /home/neuro/joost/redes/maranon/freesurfer/28646/mri/norm.mgz 31870 voxels in left wm, 42187 in right wm, xrange [126, 134] global minimum found at slice 130.0, rotations (0.50, -0.25) final transformation (x=130.0, yr=0.500, zr=-0.250): 1.000 0.004 0.009 -3.669; -0.004 1.000 -0.000 0.573; -0.009 -0.000 1.000 1.139; 0.000 0.000 0.000 1.000; updating x range to be [125, 130] in xformed coordinates best xformed slice 127 cc center is found at 127 138 101 eigenvectors: -0.000 -0.024 1.000; -0.027 -0.999 -0.024; 1.000 -0.027 -0.000; writing aseg with callosum to to /home/neuro/joost/redes/maranon/freesurfer/28646/mri/aseg.auto.mgz... corpus callosum matter segmentation took 1.2 minutes cp aseg.auto.mgz aseg.mgz #-------------------------------------------- #@# Intensity Normalization2 Tue Sep 16 01:21:58 CEST 2008 /home/neuro/joost/redes/maranon/freesurfer/28646/mri mri_normalize -aseg aseg.mgz -mask brainmask.mgz norm.mgz brain.mgz using segmentation for initial intensity normalization reading from norm.mgz... normalizing image... removing outliers in the aseg WM... 100144 control points removed building Voronoi diagram... performing soap bubble smoothing... building Voronoi diagram... performing soap bubble smoothing... 3d normalization pass 1 of 2 building Voronoi diagram... performing soap bubble smoothing... 3d normalization pass 2 of 2 building Voronoi diagram... performing soap bubble smoothing... writing output to brain.mgz 3D bias adjustment took 3 minutes and 15 seconds. using MR volume brainmask.mgz to mask input volume... using wm (109) threshold 99.0 for removing exterior voxels white matter peak found at 111 gm peak at 78 (78), valley at 53 (53) csf peak at 39, setting threshold to 65 white matter peak found at 111 gm peak at 84 (84), valley at 33 (33) csf peak at 42, setting threshold to 70 #-------------------------------------------- #@# Mask BFS Tue Sep 16 01:25:18 CEST 2008 /home/neuro/joost/redes/maranon/freesurfer/28646/mri mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz threshold mask volume at 5 Writing masked volume to brain.finalsurfs.mgz...done. #-------------------------------------------- #@# WM Segmentation Tue Sep 16 01:25:23 CEST 2008 mri_segment brain.mgz wm.seg.mgz doing initial intensity segmentation... using local statistics to label ambiguous voxels... computing class statistics for intensity windows... WM (102.0): 101.3 +- 7.8 [80.0 --> 125.0] GM (75.0) : 72.9 +- 10.1 [30.0 --> 96.0] setting bottom of white matter range to 83.0 setting top of gray matter range to 93.1 doing initial intensity segmentation... using local statistics to label ambiguous voxels... using local geometry to label remaining ambiguous voxels... reclassifying voxels using Gaussian border classifier... removing voxels with positive offset direction... smoothing T1 volume with sigma = 0.250 removing 1-dimensional structures... 7149 sparsely connected voxels removed... thickening thin strands.... 20 segments, 5347 filled 1237 bright non-wm voxels segmented. 4939 diagonally connected voxels added... white matter segmentation took 2.8 minutes writing output to wm.seg.mgz... mri_edit_wm_with_aseg -keep-in wm.seg.mgz brain.mgz aseg.mgz wm.asegedit.mgz preserving editing changes in input volume... auto filling took 1.54 minutes reading wm segmentation from wm.seg.mgz... 1425 voxels added to wm to prevent paths from MTL structures to cortex 2291 additional wm voxels added 0 additional wm voxels added SEG EDIT: 36494 voxels turned on, 36553 voxels turned off. propagating editing to output volume from wm.seg.mgz 115,126,128 old 96 new 96 115,126,128 old 96 new 96 writing edited volume to wm.asegedit.mgz.... mri_pretess wm.asegedit.mgz wm norm.mgz wm.mgz Iteration Number : 1 pass 1 (xy+): 50 found - 50 modified | TOTAL: 50 pass 2 (xy+): 0 found - 50 modified | TOTAL: 50 pass 1 (xy-): 53 found - 53 modified | TOTAL: 103 pass 2 (xy-): 0 found - 53 modified | TOTAL: 103 pass 1 (yz+): 45 found - 45 modified | TOTAL: 148 pass 2 (yz+): 0 found - 45 modified | TOTAL: 148 pass 1 (yz-): 49 found - 49 modified | TOTAL: 197 pass 2 (yz-): 0 found - 49 modified | TOTAL: 197 pass 1 (xz+): 62 found - 62 modified | TOTAL: 259 pass 2 (xz+): 0 found - 62 modified | TOTAL: 259 pass 1 (xz-): 53 found - 53 modified | TOTAL: 312 pass 2 (xz-): 0 found - 53 modified | TOTAL: 312 Iteration Number : 1 pass 1 (+++): 60 found - 60 modified | TOTAL: 60 pass 2 (+++): 0 found - 60 modified | TOTAL: 60 pass 1 (+++): 58 found - 58 modified | TOTAL: 118 pass 2 (+++): 0 found - 58 modified | TOTAL: 118 pass 1 (+++): 56 found - 56 modified | TOTAL: 174 pass 2 (+++): 0 found - 56 modified | TOTAL: 174 pass 1 (+++): 51 found - 51 modified | TOTAL: 225 pass 2 (+++): 0 found - 51 modified | TOTAL: 225 Iteration Number : 1 pass 1 (++): 102 found - 102 modified | TOTAL: 102 pass 2 (++): 0 found - 102 modified | TOTAL: 102 pass 1 (+-): 95 found - 95 modified | TOTAL: 197 pass 2 (+-): 0 found - 95 modified | TOTAL: 197 pass 1 (--): 116 found - 116 modified | TOTAL: 313 pass 2 (--): 0 found - 116 modified | TOTAL: 313 pass 1 (-+): 79 found - 79 modified | TOTAL: 392 pass 2 (-+): 0 found - 79 modified | TOTAL: 392 Iteration Number : 2 pass 1 (xy+): 17 found - 17 modified | TOTAL: 17 pass 2 (xy+): 0 found - 17 modified | TOTAL: 17 pass 1 (xy-): 17 found - 17 modified | TOTAL: 34 pass 2 (xy-): 0 found - 17 modified | TOTAL: 34 pass 1 (yz+): 11 found - 11 modified | TOTAL: 45 pass 2 (yz+): 0 found - 11 modified | TOTAL: 45 pass 1 (yz-): 13 found - 13 modified | TOTAL: 58 pass 2 (yz-): 0 found - 13 modified | TOTAL: 58 pass 1 (xz+): 10 found - 10 modified | TOTAL: 68 pass 2 (xz+): 0 found - 10 modified | TOTAL: 68 pass 1 (xz-): 11 found - 11 modified | TOTAL: 79 pass 2 (xz-): 0 found - 11 modified | TOTAL: 79 Iteration Number : 2 pass 1 (+++): 4 found - 4 modified | TOTAL: 4 pass 2 (+++): 0 found - 4 modified | TOTAL: 4 pass 1 (+++): 6 found - 6 modified | TOTAL: 10 pass 2 (+++): 0 found - 6 modified | TOTAL: 10 pass 1 (+++): 3 found - 3 modified | TOTAL: 13 pass 2 (+++): 0 found - 3 modified | TOTAL: 13 pass 1 (+++): 0 found - 0 modified | TOTAL: 13 Iteration Number : 2 pass 1 (++): 5 found - 5 modified | TOTAL: 5 pass 2 (++): 0 found - 5 modified | TOTAL: 5 pass 1 (+-): 7 found - 7 modified | TOTAL: 12 pass 2 (+-): 0 found - 7 modified | TOTAL: 12 pass 1 (--): 6 found - 6 modified | TOTAL: 18 pass 2 (--): 0 found - 6 modified | TOTAL: 18 pass 1 (-+): 7 found - 7 modified | TOTAL: 25 pass 2 (-+): 0 found - 7 modified | TOTAL: 25 Iteration Number : 3 pass 1 (xy+): 2 found - 2 modified | TOTAL: 2 pass 2 (xy+): 0 found - 2 modified | TOTAL: 2 pass 1 (xy-): 1 found - 1 modified | TOTAL: 3 pass 2 (xy-): 0 found - 1 modified | TOTAL: 3 pass 1 (yz+): 2 found - 2 modified | TOTAL: 5 pass 2 (yz+): 0 found - 2 modified | TOTAL: 5 pass 1 (yz-): 0 found - 0 modified | TOTAL: 5 pass 1 (xz+): 1 found - 1 modified | TOTAL: 6 pass 2 (xz+): 0 found - 1 modified | TOTAL: 6 pass 1 (xz-): 1 found - 1 modified | TOTAL: 7 pass 2 (xz-): 0 found - 1 modified | TOTAL: 7 Iteration Number : 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (++): 1 found - 1 modified | TOTAL: 1 pass 2 (++): 0 found - 1 modified | TOTAL: 1 pass 1 (+-): 0 found - 0 modified | TOTAL: 1 pass 1 (--): 1 found - 1 modified | TOTAL: 2 pass 2 (--): 0 found - 1 modified | TOTAL: 2 pass 1 (-+): 1 found - 1 modified | TOTAL: 3 pass 2 (-+): 0 found - 1 modified | TOTAL: 3 Iteration Number : 4 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 1 found - 1 modified | TOTAL: 1 pass 2 (xz+): 0 found - 1 modified | TOTAL: 1 pass 1 (xz-): 0 found - 0 modified | TOTAL: 1 Iteration Number : 4 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Iteration Number : 5 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 5 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 5 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 1057 (out of 520298: 0.203153) binarizing input wm segmentation... Ambiguous edge configurations... mri_pretess done #-------------------------------------------- #@# Fill Tue Sep 16 01:29:56 CEST 2008 /home/neuro/joost/redes/maranon/freesurfer/28646/mri mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.auto_noCCseg.mgz wm.mgz filled.mgz logging cutting plane coordinates to ../scripts/ponscc.cut.log... INFO: Using transforms/talairach.lta and its offset for Talairach volume ... using segmentation aseg.auto_noCCseg.mgz... reading input volume...done. searching for cutting planes...voxel to talairach voxel transform 1.077 0.007 0.006 -13.760; 0.004 1.193 0.162 -58.762; 0.004 -0.142 1.122 -0.222; 0.000 0.000 0.000 1.000; voxel to talairach voxel transform 1.077 0.007 0.006 -13.760; 0.004 1.193 0.162 -58.762; 0.004 -0.142 1.122 -0.222; 0.000 0.000 0.000 1.000; reading segmented volume aseg.auto_noCCseg.mgz... Looking for area (min, max) = (350, 1400) area[0] = 1153 (min = 350, max = 1400), aspect = 1.04 (min = 0.10, max = 0.75) need search nearby using seed (128, 121, 152), TAL = (0.0, 24.0, 7.0) talairach voxel to voxel transform 0.929 -0.006 -0.004 12.438; -0.003 0.824 -0.119 48.355; -0.004 0.104 0.876 6.252; 0.000 0.000 0.000 1.000; segmentation indicates cc at (128, 121, 152) --> (0.0, 24.0, 7.0) done. writing output to filled.mgz... filling took 1.0 minutes talairach cc position changed to (0.00, 24.00, 7.00) Erasing brainstem...done. seed_search_size = 9, min_neighbors = 5 search rh wm seed point around talairach space:(18.00, 24.00, 7.00) SRC: (113.32, 129.71, 151.61) search lh wm seed point around talairach space (-18.00, 24.00, 7.00), SRC: (146.75, 129.61, 151.47) compute mri_fill using aseg Erasing Brain Stem and Cerebellum ... Define left and right masks using aseg: Building Voronoi diagram ... Using the Voronoi diagram to separate WM into two hemispheres ... Find the largest connected component for each hemisphere ... #-------------------------------------------- #@# Tessellate lh Tue Sep 16 01:30:57 CEST 2008 /home/neuro/joost/redes/maranon/freesurfer/28646/scripts mri_pretess ../mri/filled.mgz 255 ../mri/norm.mgz ../mri/filled-pretess255.mgz Iteration Number : 1 pass 1 (xy+): 1 found - 1 modified | TOTAL: 1 pass 2 (xy+): 0 found - 1 modified | TOTAL: 1 pass 1 (xy-): 0 found - 0 modified | TOTAL: 1 pass 1 (yz+): 0 found - 0 modified | TOTAL: 1 pass 1 (yz-): 1 found - 1 modified | TOTAL: 2 pass 2 (yz-): 0 found - 1 modified | TOTAL: 2 pass 1 (xz+): 2 found - 2 modified | TOTAL: 4 pass 2 (xz+): 0 found - 2 modified | TOTAL: 4 pass 1 (xz-): 1 found - 1 modified | TOTAL: 5 pass 2 (xz-): 0 found - 1 modified | TOTAL: 5 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 1 pass 1 (++): 1 found - 1 modified | TOTAL: 1 pass 2 (++): 0 found - 1 modified | TOTAL: 1 pass 1 (+-): 1 found - 1 modified | TOTAL: 2 pass 2 (+-): 0 found - 1 modified | TOTAL: 2 pass 1 (--): 1 found - 1 modified | TOTAL: 3 pass 2 (--): 0 found - 1 modified | TOTAL: 3 pass 1 (-+): 1 found - 1 modified | TOTAL: 4 pass 2 (-+): 0 found - 1 modified | TOTAL: 4 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 1 found - 1 modified | TOTAL: 1 pass 2 (yz+): 0 found - 1 modified | TOTAL: 1 pass 1 (yz-): 0 found - 0 modified | TOTAL: 1 pass 1 (xz+): 0 found - 0 modified | TOTAL: 1 pass 1 (xz-): 0 found - 0 modified | TOTAL: 1 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 10 (out of 250126: 0.003998) Ambiguous edge configurations... mri_pretess done mri_tessellate ../mri/filled-pretess255.mgz 255 ../surf/lh.orig.nofix $Id: mri_tessellate.c,v 1.32 2007/04/26 21:44:21 fischl Exp $ $Id: mrisurf.c,v 1.557.2.13 2008/05/23 00:06:05 nicks Exp $ slice 50: 2409 vertices, 2541 faces slice 60: 9748 vertices, 10032 faces slice 70: 20689 vertices, 21097 faces slice 80: 33120 vertices, 33559 faces slice 90: 45743 vertices, 46187 faces slice 100: 58757 vertices, 59252 faces slice 110: 71823 vertices, 72316 faces slice 120: 85534 vertices, 86123 faces slice 130: 98978 vertices, 99520 faces slice 140: 111629 vertices, 112152 faces slice 150: 121687 vertices, 122222 faces slice 160: 131949 vertices, 132480 faces slice 170: 140080 vertices, 140609 faces slice 180: 147645 vertices, 148159 faces slice 190: 153799 vertices, 154245 faces slice 200: 155620 vertices, 155936 faces slice 210: 155620 vertices, 155936 faces slice 220: 155620 vertices, 155936 faces slice 230: 155620 vertices, 155936 faces slice 240: 155620 vertices, 155936 faces slice 250: 155620 vertices, 155936 faces using the conformed surface RAS to save vertex points... writing ../surf/lh.orig.nofix using vox2ras matrix: -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; rm -f ../mri/filled-pretess255.mgz mris_extract_main_component ../surf/lh.orig.nofix ../surf/lh.orig.nofix counting number of connected components... 155620 voxel in cpt #1: X=-316 [v=155620,e=467808,f=311872] located at (-29.789532, -13.303849, 1.084077) For the whole surface: X=-316 [v=155620,e=467808,f=311872] One single component has been found nothing to do done #-------------------------------------------- #@# Smooth1 lh Tue Sep 16 01:31:16 CEST 2008 mris_smooth -nw ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix /home/neuro/joost/redes/maranon/freesurfer/28646/scripts smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation1 lh Tue Sep 16 01:31:23 CEST 2008 mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix /home/neuro/joost/redes/maranon/freesurfer/28646/scripts avg radius = 45.1 mm, total surface area = 78691 mm^2 writing inflated surface to ../surf/lh.inflated.nofix inflation took 1.8 minutes Not saving sulc step 000: RMS=0.122 (target=0.015) step 005: RMS=0.096 (target=0.015) step 010: RMS=0.079 (target=0.015) step 015: RMS=0.072 (target=0.015) step 020: RMS=0.066 (target=0.015) step 025: RMS=0.063 (target=0.015) step 030: RMS=0.059 (target=0.015) step 035: RMS=0.057 (target=0.015) step 040: RMS=0.055 (target=0.015) step 045: RMS=0.054 (target=0.015) step 050: RMS=0.053 (target=0.015) step 055: RMS=0.052 (target=0.015) step 060: RMS=0.052 (target=0.015) inflation complete. Not saving sulc #-------------------------------------------- #@# QSphere lh Tue Sep 16 01:33:10 CEST 2008 /home/neuro/joost/redes/maranon/freesurfer/28646/scripts mris_sphere -q ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix doing quick spherical unfolding. $Id: mris_sphere.c,v 1.47 2007/03/08 18:36:08 greve Exp $ $Id: mrisurf.c,v 1.557.2.13 2008/05/23 00:06:05 nicks Exp $ reading original vertex positions... unfolding cortex into spherical form... tol=1.0e+00, sigma=0.0, host=fedor, nav=0, nbrs=1, l_spring_norm=1.000, l_sphere=0.025, l_convex=1.000 mom=0.90, dt=0.90 scaling brain by 0.310... inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=176.316, avgs=0 005/300: dt: 0.9000, rms radial error=176.057, avgs=0 010/300: dt: 0.9000, rms radial error=175.502, avgs=0 015/300: dt: 0.9000, rms radial error=174.775, avgs=0 020/300: dt: 0.9000, rms radial error=173.947, avgs=0 025/300: dt: 0.9000, rms radial error=173.061, avgs=0 030/300: dt: 0.9000, rms radial error=172.143, avgs=0 035/300: dt: 0.9000, rms radial error=171.208, avgs=0 040/300: dt: 0.9000, rms radial error=170.265, avgs=0 045/300: dt: 0.9000, rms radial error=169.321, avgs=0 050/300: dt: 0.9000, rms radial error=168.377, avgs=0 055/300: dt: 0.9000, rms radial error=167.436, avgs=0 060/300: dt: 0.9000, rms radial error=166.499, avgs=0 065/300: dt: 0.9000, rms radial error=165.567, avgs=0 070/300: dt: 0.9000, rms radial error=164.639, avgs=0 075/300: dt: 0.9000, rms radial error=163.717, avgs=0 080/300: dt: 0.9000, rms radial error=162.799, avgs=0 085/300: dt: 0.9000, rms radial error=161.886, avgs=0 090/300: dt: 0.9000, rms radial error=160.978, avgs=0 095/300: dt: 0.9000, rms radial error=160.075, avgs=0 100/300: dt: 0.9000, rms radial error=159.177, avgs=0 105/300: dt: 0.9000, rms radial error=158.284, avgs=0 110/300: dt: 0.9000, rms radial error=157.396, avgs=0 115/300: dt: 0.9000, rms radial error=156.513, avgs=0 120/300: dt: 0.9000, rms radial error=155.635, avgs=0 125/300: dt: 0.9000, rms radial error=154.762, avgs=0 130/300: dt: 0.9000, rms radial error=153.893, avgs=0 135/300: dt: 0.9000, rms radial error=153.029, avgs=0 140/300: dt: 0.9000, rms radial error=152.171, avgs=0 145/300: dt: 0.9000, rms radial error=151.316, avgs=0 150/300: dt: 0.9000, rms radial error=150.467, avgs=0 155/300: dt: 0.9000, rms radial error=149.622, avgs=0 160/300: dt: 0.9000, rms radial error=148.780, avgs=0 165/300: dt: 0.9000, rms radial error=147.943, avgs=0 170/300: dt: 0.9000, rms radial error=147.111, avgs=0 175/300: dt: 0.9000, rms radial error=146.283, avgs=0 180/300: dt: 0.9000, rms radial error=145.459, avgs=0 185/300: dt: 0.9000, rms radial error=144.640, avgs=0 190/300: dt: 0.9000, rms radial error=143.826, avgs=0 195/300: dt: 0.9000, rms radial error=143.017, avgs=0 200/300: dt: 0.9000, rms radial error=142.212, avgs=0 205/300: dt: 0.9000, rms radial error=141.411, avgs=0 210/300: dt: 0.9000, rms radial error=140.615, avgs=0 215/300: dt: 0.9000, rms radial error=139.823, avgs=0 220/300: dt: 0.9000, rms radial error=139.035, avgs=0 225/300: dt: 0.9000, rms radial error=138.252, avgs=0 230/300: dt: 0.9000, rms radial error=137.473, avgs=0 235/300: dt: 0.9000, rms radial error=136.698, avgs=0 240/300: dt: 0.9000, rms radial error=135.928, avgs=0 245/300: dt: 0.9000, rms radial error=135.162, avgs=0 250/300: dt: 0.9000, rms radial error=134.400, avgs=0 255/300: dt: 0.9000, rms radial error=133.642, avgs=0 260/300: dt: 0.9000, rms radial error=132.889, avgs=0 265/300: dt: 0.9000, rms radial error=132.140, avgs=0 270/300: dt: 0.9000, rms radial error=131.395, avgs=0 275/300: dt: 0.9000, rms radial error=130surface projected - minimizing metric distortion... vertex spacing 0.94 +- 0.61 (0.00-->7.96) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.25-->0.77) tol=1.0e-01, sigma=0.0, host=fedor, nav=32, nbrs=1, l_nlarea=1.000 using quadratic fit line minimization tol=1.8e+01, sigma=0.0, host=fedor, nav=32, nbrs=1, l_nlarea=1.000 using quadratic fit line minimization 301: dt: 144.16, sse: 8107.8 (0.023, 23.1, 0.000), neg: 13119 (%0.896:%1.80), avgs: 32 302: dt: 0.29, sse: 8107.8 (0.023, 23.1, 0.000), neg: 13116 (%0.896:%1.80), avgs: 32 303: dt: 0.29, sse: 8107.7 (0.023, 23.1, 0.000), neg: 13113 (%0.895:%1.80), avgs: 32 304: dt: 0.29, sse: 8107.6 (0.023, 23.1, 0.000), neg: 13114 (%0.894:%1.80), avgs: 32 305: dt: 0.29, sse: 8107.6 (0.023, 23.1, 0.000), neg: 13119 (%0.893:%1.80), avgs: 32 306: dt: 0.29, sse: 8107.5 (0.023, 23.1, 0.000), neg: 13118 (%0.892:%1.80), avgs: 32 307: dt: 0.29, sse: 8107.4 (0.023, 23.1, 0.000), neg: 13128 (%0.890:%1.80), avgs: 32 308: dt: 0.29, sse: 8107.4 (0.023, 23.1, 0.000), neg: 13129 (%0.889:%1.80), avgs: 32 309: dt: 0.29, sse: 8107.3 (0.023, 23.0, 0.000), neg: 13122 (%0.887:%1.80), avgs: 32 310: dt: 0.29, sse: 8107.2 (0.023, 23.0, 0.000), neg: 13127 (%0.885:%1.79), avgs: 32 vertex spacing 0.94 +- 0.62 (0.00-->8.13) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.14-->0.77) 311: dt: 0.29, sse: 8107.2 (0.023, 23.1, 0.000), neg: 13144 (%0.883:%1.79), avgs: 32 312: dt: 315.91, sse: 8102.4 (0.023, 23.2, 0.000), neg: 13655 (%0.618:%1.64), avgs: 32 vertex spacing 0.94 +- 0.62 (0.00-->8.46) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.11-->0.68) 313: dt: 0.21, sse: 8102.4 (0.023, 23.2, 0.000), neg: 13656 (%0.617:%1.64), avgs: 8 314: dt: 0.15, sse: 8102.4 (0.023, 23.2, 0.000), neg: 13657 (%0.616:%1.63), avgs: 8 315: dt: 0.15, sse: 8102.4 (0.023, 23.2, 0.000), neg: 13664 (%0.615:%1.63), avgs: 8 316: dt: 0.15, sse: 8102.4 (0.023, 23.2, 0.000), neg: 13667 (%0.614:%1.63), avgs: 8 317: dt: 0.15, sse: 8102.4 (0.023, 23.2, 0.000), neg: 13676 (%0.612:%1.63), avgs: 8 318: dt: 0.15, sse: 8102.4 (0.023, 23.2, 0.000), neg: 13694 (%0.610:%1.63), avgs: 8 319: dt: 0.15, sse: 8102.3 (0.023, 23.2, 0.000), neg: 13709 (%0.608:%1.63), avgs: 8 320: dt: 0.15, sse: 8102.3 (0.023, 23.2, 0.000), neg: 13710 (%0.606:%1.63), avgs: 8 vertex spacing 0.94 +- 0.62 (0.00-->8.48) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.11-->0.68) 321: dt: 0.15, sse: 8102.3 (0.023, 23.3, 0.000), neg: 13708 (%0.603:%1.63), avgs: 8 322: dt: 0.15, sse: 8102.3 (0.023, 23.3, 0.000), neg: 13720 (%0.601:%1.63), avgs: 8 323: dt: 0.15, sse: 8102.3 (0.023, 23.3, 0.000), neg: 13729 (%0.598:%1.63), avgs: 8 324: dt: 0.00, sse: 8102.3 (0.023, 23.3, 0.000), neg: 13729 (%0.598:%1.63), avgs: 8 vertex spacing 0.94 +- 0.62 (0.00-->8.49) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.11-->0.68) 325: dt: 0.42, sse: 8102.3 (0.023, 23.3, 0.000), neg: 13771 (%0.594:%1.64), avgs: 2 326: dt: 0.09, sse: 8102.3 (0.023, 23.3, 0.000), neg: 13780 (%0.592:%1.63), avgs: 2 327: dt: 0.09, sse: 8102.4 (0.023, 23.3, 0.000), neg: 13808 (%0.588:%1.64), avgs: 2 328: dt: 0.09, sse: 8102.4 (0.023, 23.3, 0.000), neg: 13834 (%0.585:%1.64), avgs: 2 329: dt: 0.09, sse: 8102.4 (0.023, 23.3, 0.000), neg: 13863 (%0.581:%1.64), avgs: 2 330: dt: 0.09, sse: 8102.4 (0.023, 23.3, 0.000), neg: 13885 (%0.577:%1.63), avgs: 2 vertex spacing 0.94 +- 0.62 (0.00-->8.50) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.10-->0.68) 331: dt: 0.09, sse: 8102.5 (0.023, 23.3, 0.000), neg: 13904 (%0.573:%1.63), avgs: 2 332: dt: 0.09, sse: 8102.5 (0.023, 23.3, 0.000), neg: 13924 (%0.570:%1.63), avgs: 2 333: dt: 0.09, sse: 8102.6 (0.023, 23.3, 0.000), neg: 13962 (%0.566:%1.63), avgs: 2 334: dt: 0.09, sse: 8102.6 (0.023, 23.3, 0.000), neg: 13989 (%0.562:%1.63), avgs: 2 335: dt: 0.09, sse: 8102.7 (0.023, 23.3, 0.000), neg: 14030 (%0.559:%1.63), avgs: 2 336: dt: 0.00, sse: 8102.7 (0.023, 23.3, 0.000), neg: 14030 (%0.559:%1.63), avgs: 2 vertex spacing 0.94 +- 0.62 (0.00-->8.51) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.08-->0.68) 337: dt: 0.00, sse: 8102.7 (0.023, 23.3, 0.000), neg: 14030 (%0.559:%1.63), avgs: 0 vertex spacing 0.94 +- 0.62 (0.00-->8.51) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.08-->0.68) tol=1.8e+01, sigma=0.0, host=fedor, nav=32, nbrs=1, l_nlarea=1.000 using quadratic fit line minimization 338: dt: 321.50, sse: 1203.5 (0.023, 23.1, 0.000), neg: 13612 (%0.423:%1.41), avgs: 32 .655, avgs=0 280/300: dt: 0.9000, rms radial error=129.918, avgs=0 285/300: dt: 0.9000, rms radial error=129.186, avgs=0 290/300: dt: 0.9000, rms radial error=128.458, avgs=0 295/300: dt: 0.9000, rms radial error=127.733, avgs=0 300/300: dt: 0.9000, rms radial error=127.013, avgs=0 spherical inflation complete. epoch 1 (K=20.0), pass 1, starting sse = 8116.23 integrating with navgs=32 and tol=3.200e+00 taking momentum steps... integrating with navgs=32 and tol=3.200e+00 integrating with navgs=32 and tol=3.200e+00 integrating with navgs=8 and tol=1.671e+00 taking momentum steps... integrating with navgs=8 and tol=1.671e+00 integrating with navgs=8 and tol=1.671e+00 integrating with navgs=2 and tol=9.648e-01 taking momentum steps... integrating with navgs=2 and tol=9.648e-01 integrating with navgs=2 and tol=9.648e-01 integrating with navgs=0 and tol=5.570e-01 pass 1 complete, delta sse/iter = 0.00/37 = 0.00005 epoch 2 (K=80.0), pass 1, starting sse = 1209.61 integrating with navgs=32 and tol=3.200e+00 taking m339: dt: 0.29, sse: 1203.5 (0.023, 23.1, 0.000), neg: 13630 (%0.421:%1.40), avgs: 32 340: dt: 0.29, sse: 1203.5 (0.023, 23.1, 0.000), neg: 13658 (%0.419:%1.40), avgs: 32 vertex spacing 0.94 +- 0.62 (0.00-->8.62) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.13-->0.67) 341: dt: 0.29, sse: 1203.5 (0.023, 23.1, 0.000), neg: 13677 (%0.417:%1.39), avgs: 32 342: dt: 0.29, sse: 1203.5 (0.023, 23.1, 0.000), neg: 13703 (%0.416:%1.39), avgs: 32 343: dt: 0.29, sse: 1203.4 (0.023, 23.1, 0.000), neg: 13716 (%0.414:%1.39), avgs: 32 344: dt: 0.29, sse: 1203.4 (0.023, 23.1, 0.000), neg: 13730 (%0.412:%1.39), avgs: 32 345: dt: 0.29, sse: 1203.4 (0.023, 23.1, 0.000), neg: 13737 (%0.410:%1.39), avgs: 32 346: dt: 0.29, sse: 1203.3 (0.023, 23.1, 0.000), neg: 13760 (%0.409:%1.38), avgs: 32 347: dt: 0.29, sse: 1203.3 (0.023, 23.1, 0.000), neg: 13774 (%0.407:%1.38), avgs: 32 348: dt: 0.29, sse: 1203.2 (0.023, 23.1, 0.000), neg: 13791 (%0.406:%1.38), avgs: 32 349: dt: 73.37, sse: 1201.6 (0.023, 23.1, 0.000), neg: 13784 (%0.381:%1.34), avgs: 32 vertex spacing 0.94 +- 0.62 (0.00-->8.65) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.07-->0.67) 350: dt: 12.00, sse: 1201.1 (0.023, 23.1, 0.000), neg: 13855 (%0.368:%1.33), avgs: 8 vertex spacing 0.94 +- 0.62 (0.00-->8.65) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.06-->0.66) 351: dt: 0.15, sse: 1201.1 (0.023, 23.2, 0.000), neg: 13860 (%0.367:%1.32), avgs: 8 352: dt: 0.15, sse: 1201.1 (0.023, 23.2, 0.000), neg: 13869 (%0.367:%1.32), avgs: 8 353: dt: 0.15, sse: 1201.1 (0.023, 23.2, 0.000), neg: 13876 (%0.367:%1.32), avgs: 8 354: dt: 0.15, sse: 1201.1 (0.023, 23.2, 0.000), neg: 13880 (%0.366:%1.32), avgs: 8 355: dt: 0.15, sse: 1201.1 (0.023, 23.2, 0.000), neg: 13876 (%0.365:%1.32), avgs: 8 356: dt: 0.15, sse: 1201.1 (0.023, 23.2, 0.000), neg: 13890 (%0.364:%1.32), avgs: 8 357: dt: 0.15, sse: 1201.0 (0.023, 23.2, 0.000), neg: 13907 (%0.364:%1.32), avgs: 8 358: dt: 0.15, sse: 1201.0 (0.023, 23.2, 0.000), neg: 13914 (%0.363:%1.32), avgs: 8 359: dt: 0.15, sse: 1201.0 (0.023, 23.2, 0.000), neg: 13914 (%0.362:%1.31), avgs: 8 360: dt: 0.15, sse: 1200.9 (0.023, 23.2, 0.000), neg: 13922 (%0.361:%1.31), avgs: 8 vertex spacing 0.94 +- 0.62 (0.00-->8.66) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.06-->0.66) 361: dt: 35.32, sse: 1200.2 (0.023, 23.2, 0.000), neg: 14066 (%0.343:%1.30), avgs: 8 vertex spacing 0.94 +- 0.63 (0.00-->8.67) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.12-->0.66) 362: dt: 1.42, sse: 1199.7 (0.023, 23.2, 0.000), neg: 14125 (%0.332:%1.30), avgs: 2 363: dt: 0.09, sse: 1199.7 (0.023, 23.2, 0.000), neg: 14134 (%0.331:%1.30), avgs: 2 364: dt: 0.09, sse: 1199.7 (0.023, 23.2, 0.000), neg: 14139 (%0.330:%1.30), avgs: 2 365: dt: 0.09, sse: 1199.6 (0.023, 23.2, 0.000), neg: 14158 (%0.329:%1.30), avgs: 2 366: dt: 0.09, sse: 1199.6 (0.023, 23.2, 0.000), neg: 14164 (%0.328:%1.29), avgs: 2 367: dt: 0.09, sse: 1199.6 (0.023, 23.3, 0.000), neg: 14188 (%0.327:%1.30), avgs: 2 368: dt: 0.09, sse: 1199.5 (0.023, 23.3, 0.000), neg: 14208 (%0.326:%1.29), avgs: 2 369: dt: 0.09, sse: 1199.5 (0.023, 23.3, 0.000), neg: 14225 (%0.325:%1.30), avgs: 2 370: dt: 0.09, sse: 1199.4 (0.023, 23.3, 0.000), neg: 14243 (%0.323:%1.29), avgs: 2 vertex spacing 0.94 +- 0.63 (0.00-->8.67) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.04-->0.66) 371: dt: 0.09, sse: 1199.4 (0.023, 23.3, 0.000), neg: 14269 (%0.322:%1.29), avgs: 2 372: dt: 0.09, sse: 1199.4 (0.023, 23.3, 0.000), neg: 14288 (%0.321:%1.30), avgs: 2 373: dt: 3.48, sse: 1199.2 (0.023, 23.3, 0.000), neg: 14376 (%0.316:%1.29), avgs: 2 vertex spacing 0.94 +- 0.63 (0.00-->8.67) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.04-->0.66) 374: dt: 0.12, sse: 1199.1 (0.023, 23.3, 0.000), neg: 14428 (%0.314:%1.30), avgs: 0 vertex spacing 0.94 +- 0.63 (0.00-->8.67) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.04-->0.66) tol=1.8e+01, sigma=0.0, host=fedor, nav=32, nbrs=1, l_nlarea=1.000 using quadratic fit line minimization 375: dt: 227.18, sse: 143.1 (0.023, 23.0, 0.000), neg: 13664 (%0.272:%1.15), avgs: 32 376: dt: 0.29, sse: 143.1 (0.023, 23.0, 0.000), neg: 13675 (%0.271:%1.15), avgs: 32 377: dt: 0.29, sse: 143.1 (0.023, 23.0, 0.000), neg: 13687 (%0.270:%1.15), avgs: 32 378: dt: 0.29, sse: 143.0 (0.023, 23.0, 0.000), neg: 13695 (%0.269:%1.15), avgs: 32 379: dt: 0.29, sse: 142.9 (0.023, 23.0, 0.000), neg: 13710 (%0.268:%1.15), avgs: 32 380: dt: 0.29, sse: 142.9 (0.023, 23.0, 0.000), neg: 13728 (%0.267:%1.15), avgs: 32 vertex spacing 0.94 +- 0.63 (0.00-->8.69) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.05-->0.66) 381: dt: 0.29, sse: 142.8 (0.023, 23.0, 0.000), neg: 13741 (%0.266:%1.15), avgs: 32 382: dt: 0.29, sse: 142.8 (0.023, 23.0, 0.000), neg: 13749 (%0.265:%1.15), avgs: 32 383: dt: 0.29, sse: 142.7 (0.023, 23.0, 0.000), neg: 13758 (%0.264:%1.15), avgs: 32 384: dt: 0.29, sse: 142.6 (0.023, 23.0, 0.000), neg: 13774 (%0.263:%1.15), avgs: 32 385: dt: 0.29, sse: 142.6 (0.023, 23.0, 0.000), neg: 13787 (%0.262:%1.15), avgs: 32 386: dt: 22.58, sse: 142.2 (0.023, 23.0, 0.000), neg: 13804 (%0.257:%1.13), avgs: 32 vertex spacing 0.94 +- 0.63 (0.00-->8.70) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.04-->0.66) 387: dt: 6.23, sse: 142.0 (0.023, 23.0, 0.000), neg: 13854 (%0.254:%1.13), avgs: 8 388: dt: 0.15, sse: 142.0 (0.023, 23.0, 0.000), neg: 13866 (%0.254:%1.13), avgs: 8 389: dt: 0.15, sse: 142.0 (0.023, 23.0, 0.000), neg: 13869 (%0.253:%1.13), avgs: 8 390: dt: 0.15, sse: 142.0 (0.023, 23.0, 0.000), neg: 13884 (%0.253:%1.13), avgs: 8 vertex spacing 0.94 +- 0.63 (0.00-->8.70) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.04-->0.66) 391: dt: 0.15, sse: 141.9 (0.023, 23.0, 0.000), neg: 13884 (%0.253:%1.13), avgs: 8 392: dt: 0.15, sse: 141.9 (0.023, 23.0, 0.000), neg: 13891 (%0.252:%1.13), avgs: 8 393: dt: 0.15, sse: 141.9 (0.023, 23.0, 0.000), neg: 13890 (%0.252:%1.13), avgs: 8 394: dt: 0.15, sse: 141.8 (0.023, 23.0, 0.000), neg: 13893 (%0.251:%1.13), avgs: 8 395: dt: 0.15, sse: 141.8 (0.023, 23.0, 0.000), neg: 13890 (%0.251:%1.12), avgs: 8 396: dt: 0.15, sse: 141.8 (0.023, 23.0, 0.000), neg: 13893 (%0.250:%1.12), avgs: 8 397: dt: 0.15, sse: 141.7 (0.023, 23.0, 0.000), neg: 13894 (%0.249:%1.12), avgs: 8 398: dt: 11.01, sse: 141.5 (0.023, 23.0, 0.000), neg: 13879 (%0.246:%1.11), avgs: 8 vertex spacing 0.94 +- 0.63 (0.00-->8.70) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.04-->0.66) 399: dt: 0.52, sse: 141.3 (0.023, 23.0, 0.000), neg: 13899 (%0.243:%1.12), avgs: 2 400: dt: 0.09, sse: 141.2 (0.023, 23.0, 0.000), neg: 13895 (%0.242:%1.11), avgs: 2 vertex spacing 0.94 +- 0.63 (0.00-->8.70) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.04-->0.66) 401: dt: 0.09, sse: 141.1 (0.023, 23.0, 0.000), neg: 13910 (%0.241:%1.12), avgs: 2 402: dt: 0.09, sse: 141.1 (0.023, 23.0, 0.000), neg: 13914 (%0.240:%1.12), avgs: 2 403: dt: 0.09, sse: 141.0 (0.023, 23.0, 0.000), neg: 13922 (%0.238:%1.12), avgs: 2 404: dt: 0.09, sse: 140.9 (0.023, 23.0, 0.000), neg: 13927 (%0.237:%1.12), avgs: 2 405: dt: 0.09, sse: 140.8 (0.023, 23.0, 0.000), neg: 13931 (%0.236:%1.12), avgs: 2 406: dt: 0.09, sse: 140.7 (0.023, 23.0, 0.000), neg: 13936 (%0.234:%1.12), avgs: 2 407: dt: 0.09, sse: 140.6 (0.023, 23.0, 0.000), neg: 13945 (%0.233:%1.12), avgs: 2 408: dt: 0.09, sse: 140.6 (0.023, 23.0, 0.000), neg: 13951 (%0.231:%1.11), avgs: 2 409: dt: 0.09, sse: 140.5 (0.023, 23.0, 0.000), neg: 13955 (%0.230:%1.11), avgs: 2 410: dt: 1.94, sse: 140.2 (0.023, 23.0, 0.000), neg: 13973 (%0.226:%1.10), avgs: 2 vertex spacing 0.94 +- 0.63 (0.00-->8.70) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.04-->0.66) vertex spacing 0.94 +- 0.63 (0.00-->8.70) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.04-->0.66) omentum steps... integrating with navgs=32 and tol=3.200e+00 integrating with navgs=32 and tol=3.200e+00 integrating with navgs=8 and tol=1.671e+00 taking momentum steps... integrating with navgs=8 and tol=1.671e+00 integrating with navgs=8 and tol=1.671e+00 integrating with navgs=2 and tol=9.648e-01 taking momentum steps... integrating with navgs=2 and tol=9.648e-01 integrating with navgs=2 and tol=9.648e-01 integrating with navgs=0 and tol=5.570e-01 pass 1 complete, delta sse/iter = 0.01/37 = 0.00023 epoch 3 (K=320.0), pass 1, starting sse = 145.80 integrating with navgs=32 and tol=3.200e+00 taking momentum steps... integrating with navgs=32 and tol=3.200e+00 integrating with navgs=32 and tol=3.200e+00 integrating with navgs=8 and tol=1.671e+00 taking momentum steps... integrating with navgs=8 and tol=1.671e+00 integrating with navgs=8 and tol=1.671e+00 integrating with navgs=2 and tol=9.648e-01 taking momentum steps... integrating with navgs=2 and tol=9.648e-01 integrating with navgs=2 and tol=9.648e-01 in411: dt: 0.18, sse: 140.1 (0.023, 23.0, 0.000), neg: 14017 (%0.224:%1.10), avgs: 0 vertex spacing 0.94 +- 0.63 (0.00-->8.70) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.04-->0.66) tol=1.8e+01, sigma=0.0, host=fedor, nav=32, nbrs=1, l_nlarea=1.000 using quadratic fit line minimization 412: dt: 169.62, sse: 29.3 (0.023, 22.8, 0.000), neg: 13690 (%0.212:%1.08), avgs: 32 413: dt: 0.29, sse: 29.3 (0.023, 22.8, 0.000), neg: 13685 (%0.211:%1.07), avgs: 32 414: dt: 0.29, sse: 29.2 (0.023, 22.8, 0.000), neg: 13688 (%0.210:%1.07), avgs: 32 415: dt: 0.29, sse: 29.1 (0.023, 22.8, 0.000), neg: 13686 (%0.209:%1.07), avgs: 32 416: dt: 0.29, sse: 29.0 (0.023, 22.8, 0.000), neg: 13694 (%0.208:%1.07), avgs: 32 417: dt: 0.29, sse: 29.0 (0.023, 22.8, 0.000), neg: 13701 (%0.207:%1.07), avgs: 32 418: dt: 0.29, sse: 28.9 (0.023, 22.8, 0.000), neg: 13694 (%0.206:%1.06), avgs: 32 419: dt: 0.29, sse: 28.8 (0.023, 22.8, 0.000), neg: 13685 (%0.205:%1.05), avgs: 32 420: dt: 0.29, sse: 28.8 (0.023, 22.8, 0.000), neg: 13689 (%0.204:%1.05), avgs: 32 vertex spacing 0.94 +- 0.63 (0.00-->8.71) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.04-->0.66) 421: dt: 0.29, sse: 28.7 (0.023, 22.8, 0.000), neg: 13686 (%0.204:%1.05), avgs: 32 422: dt: 0.29, sse: 28.7 (0.023, 22.8, 0.000), neg: 13681 (%0.203:%1.05), avgs: 32 423: dt: 27.74, sse: 28.3 (0.023, 22.8, 0.000), neg: 13681 (%0.198:%1.04), avgs: 32 vertex spacing 0.94 +- 0.63 (0.00-->8.71) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.04-->0.66) 424: dt: 10.11, sse: 28.2 (0.023, 22.8, 0.000), neg: 13688 (%0.195:%1.04), avgs: 8 425: dt: 0.15, sse: 28.2 (0.023, 22.8, 0.000), neg: 13692 (%0.195:%1.04), avgs: 8 426: dt: 0.15, sse: 28.1 (0.023, 22.8, 0.000), neg: 13674 (%0.195:%1.03), avgs: 8 427: dt: 0.15, sse: 28.1 (0.023, 22.8, 0.000), neg: 13678 (%0.194:%1.03), avgs: 8 428: dt: 0.15, sse: 28.0 (0.023, 22.8, 0.000), neg: 13686 (%0.193:%1.03), avgs: 8 429: dt: 0.15, sse: 28.0 (0.023, 22.8, 0.000), neg: 13695 (%0.193:%1.03), avgs: 8 430: dt: 0.15, sse: 28.0 (0.023, 22.8, 0.000), neg: 13698 (%0.192:%1.03), avgs: 8 vertex spacing 0.94 +- 0.63 (0.00-->8.71) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.04-->0.66) 431: dt: 0.15, sse: 27.9 (0.023, 22.8, 0.000), neg: 13686 (%0.191:%1.03), avgs: 8 432: dt: 0.15, sse: 27.9 (0.023, 22.8, 0.000), neg: 13684 (%0.191:%1.03), avgs: 8 433: dt: 0.15, sse: 27.9 (0.023, 22.8, 0.000), neg: 13690 (%0.191:%1.03), avgs: 8 434: dt: 0.15, sse: 27.9 (0.023, 22.8, 0.000), neg: 13692 (%0.191:%1.03), avgs: 8 435: dt: 6.01, sse: 27.7 (0.023, 22.7, 0.000), neg: 13648 (%0.189:%1.03), avgs: 8 vertex spacing 0.94 +- 0.63 (0.00-->8.71) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.04-->0.66) 436: dt: 0.70, sse: 27.5 (0.023, 22.7, 0.000), neg: 13676 (%0.185:%1.03), avgs: 2 437: dt: 0.09, sse: 27.5 (0.023, 22.7, 0.000), neg: 13666 (%0.185:%1.03), avgs: 2 438: dt: 0.09, sse: 27.4 (0.023, 22.7, 0.000), neg: 13653 (%0.184:%1.03), avgs: 2 439: dt: 0.09, sse: 27.3 (0.023, 22.7, 0.000), neg: 13652 (%0.183:%1.03), avgs: 2 440: dt: 0.09, sse: 27.2 (0.023, 22.7, 0.000), neg: 13663 (%0.181:%1.03), avgs: 2 vertex spacing 0.94 +- 0.63 (0.00-->8.71) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.03-->0.66) 441: dt: 0.09, sse: 27.2 (0.023, 22.7, 0.000), neg: 13664 (%0.180:%1.04), avgs: 2 442: dt: 0.09, sse: 27.1 (0.023, 22.7, 0.000), neg: 13670 (%0.179:%1.05), avgs: 2 443: dt: 0.09, sse: 27.0 (0.023, 22.7, 0.000), neg: 13673 (%0.178:%1.05), avgs: 2 444: dt: 0.09, sse: 27.0 (0.023, 22.7, 0.000), neg: 13652 (%0.177:%1.05), avgs: 2 445: dt: 0.09, sse: 26.8 (0.023, 22.7, 0.000), neg: 13637 (%0.175:%1.04), avgs: 2 446: dt: 0.09, sse: 26.7 (0.023, 22.7, 0.000), neg: 13636 (%0.174:%1.04), avgs: 2 447: dt: 2.45, sse: 26.6 (0.023, 22.7, 0.000), neg: 13632 (%0.171:%1.02), avgs: 2 vertex spacing 0.94 +- 0.63 (0.00-->8.71) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.03-->0.66) 448: dt: 0.11, sse: 26.4 (0.023, 22.7, 0.000), neg: 13663 (%0.169:%1.02), avgs: 0 449: dt: 0.07, sse: 26.3 (0.023, 22.7, 0.000), neg: 13694 (%0.167:%1.03), avgs: 0 vertex spacing 0.94 +- 0.63 (0.00-->8.71) (max @ vno 106469 --> 106484) face area 0.02 +- 0.03 (-0.03-->0.66) 449: dt: 0.00, sse: 8104.8 (0.023, 22.7, 0.000), neg: 13694 (%0.167:%1.03), avgs: 32 writing spherical brain to ../surf/lh.qsphere.nofix spherical transformation took 0.28 hours tegrating with navgs=0 and tol=5.570e-01 pass 1 complete, delta sse/iter = 0.04/37 = 0.00105 epoch 4 (K=1280.0), pass 1, starting sse = 30.11 integrating with navgs=32 and tol=3.200e+00 taking momentum steps... integrating with navgs=32 and tol=3.200e+00 integrating with navgs=32 and tol=3.200e+00 integrating with navgs=8 and tol=1.671e+00 taking momentum steps... integrating with navgs=8 and tol=1.671e+00 integrating with navgs=8 and tol=1.671e+00 integrating with navgs=2 and tol=9.648e-01 taking momentum steps... integrating with navgs=2 and tol=9.648e-01 integrating with navgs=2 and tol=9.648e-01 integrating with navgs=0 and tol=5.570e-01 pass 1 complete, delta sse/iter = 0.13/38 = 0.00335 final distance error %100000.00 optimization complete. unfolding took 0.22 hours #-------------------------------------------- #@# Fix Topology lh Tue Sep 16 01:50:13 CEST 2008 cp ../surf/lh.orig.nofix ../surf/lh.orig cp ../surf/lh.inflated.nofix ../surf/lh.inflated /home/neuro/joost/redes/maranon/freesurfer/28646/scripts mris_fix_topology -mgz -sphere qsphere.nofix -ga 28646 lh reading spherical homeomorphism from 'qsphere.nofix' using genetic algorithm with optimized parameters ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format $Id: mris_fix_topology.c,v 1.43 2007/01/05 16:57:16 nicks Exp $ $Id: mrisurf.c,v 1.557.2.13 2008/05/23 00:06:05 nicks Exp $ before topology correction, eno=-316 (nv=155620, nf=311872, ne=467808, g=159) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 8 iterations marking ambiguous vertices... 31311 ambiguous faces found in tessellation segmenting defects... 122 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 58 into 54 -merging segment 59 into 54 -merging segment 85 into 67 -merging segment 98 into 95 118 defects to be corrected 0 vertices coincident reading input surface /home/neuro/joost/redes/maranon/freesurfer/28646/surf/lh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Computing Initial Surface Statistics -face loglikelihood: -9.1826 (-4.5913) -vertex loglikelihood: -5.9048 (-2.9524) -normal dot loglikelihood: -3.5576 (-3.5576) -quad curv loglikelihood: -6.6097 (-3.3049) Total Loglikelihood : -25.2548 CORRECTING DEFECT 0 (vertices=46, convex hull=38) After retessellation of defect 0, euler #=-109 (137297,405991,268585) : difference with theory (-115) = -6 CORRECTING DEFECT 1 (vertices=2258, convex hull=753) After retessellation of defect 1, euler #=-109 (137849,408072,270114) : difference with theory (-114) = -5 CORRECTING DEFECT 2 (vertices=144, convex hull=198) After retessellation of defect 2, euler #=-108 (137932,408419,270379) : difference with theory (-113) = -5 CORRECTING DEFECT 3 (vertices=30, convex hull=39) After retessellation of defect 3, euler #=-107 (137943,408466,270416) : difference with theory (-112) = -5 CORRECTING DEFECT 4 (vertices=59, convex hull=64) After retessellation of defect 4, euler #=-106 (137966,408565,270493) : difference with theory (-111) = -5 CORRECTING DEFECT 5 (vertices=25, convex hull=61) After retessellation of defect 5, euler #=-105 (137982,408637,270550) : difference with theory (-110) = -5 CORRECTING DEFECT 6 (vertices=410, convex hull=174) After retessellation of defect 6, euler #=-105 (138086,409038,270847) : difference with theory (-109) = -4 CORRECTING DEFECT 7 (vertices=19, convex hull=58) After retessellation of defect 7, euler #=-104 (138096,409088,270888) : difference with theory (-108) = -4 CORRECTING DEFECT 8 (vertices=95, convex hull=98) After retessellation of defect 8, euler #=-103 (138146,409285,271036) : difference with theory (-107) = -4 CORRECTING DEFECT 9 (vertices=36, convex hull=71) After retessellation of defect 9, euler #=-102 (138166,409374,271106) : difference with theory (-106) = -4 CORRECTING DEFECT 10 (vertices=41, convex hull=71) After retessellation of defect 10, euler #=-101 (138191,409477,271185) : difference with theory (-105) = -4 CORRECTING DEFECT 11 (vertices=28, convex hull=69) After retessellation of defect 11, euler #=-100 (138206,409550,271244) : difference with theory (-104) = -4 CORRECTING DEFECT 12 (vertices=37, convex hull=62) After retessellation of defect 12, euler #=-99 (138233,409653,271321) : difference with theory (-103) = -4 CORRECTING DEFECT 13 (vertices=74, convex hull=60) After retessellation of defect 13, euler #=-98 (138256,409745,271391) : difference with theory (-102) = -4 CORRECTING DEFECT 14 (vertices=26, convex hull=43) After retessellation of defect 14, euler #=-97 (138265,409783,271421) : difference with theory (-101) = -4 CORRECTING DEFECT 15 (vertices=148, convex hull=125) After retessellation of defect 15, euler #=-96 (138304,409958,271558) : difference with theory (-100) = -4 CORRECTING DEFECT 16 (vertices=47, convex hull=92) After retessellation of defect 16, euler #=-95 (138341,410107,271671) : difference with theory (-99) = -4 CORRECTING DEFECT 17 (vertices=30, convex hull=76) After retessellation of defect 17, euler #=-94 (138360,410192,271738) : difference with theory (-98) = -4 CORRECTING DEFECT 18 (vertices=71, convex hull=95) After retessellation of defect 18, euler #=-93 (138402,410359,271864) : difference with theory (-97) = -4 CORRECTING DEFECT 19 (vertices=60, convex hull=102) After retessellation of defect 19, euler #=-92 (138443,410525,271990) : difference with theory (-96) = -4 CORRECTING DEFECT 20 (vertices=39, convex hull=66) After retessellation of defect 20, euler #=-91 (138460,410599,272048) : difference with theory (-95) = -4 CORRECTING DEFECT 21 (vertices=49, convex hull=68) After retessellation of defect 21, euler #=-90 (138489,410716,272137) : difference with theory (-94) = -4 CORRECTING DEFECT 22 (vertices=2140, convex hull=658) After retessellation of defect 22, euler #=-90 (138989,412585,273506) : difference with theory (-93) = -3 CORRECTING DEFECT 23 (vertices=93, convex hull=87) After retessellation of defect 23, euler #=-89 (138998,412649,273562) : difference with theory (-92) = -3 CORRECTING DEFECT 24 (vertices=58, convex hull=98) After retessellation of defect 24, euler #=-88 (139032,412793,273673) : difference with theory (-91) = -3 CORRECTING DEFECT 25 (vertices=23, convex hull=50) After retessellation of defect 25, euler #=-87 (139045,412852,273720) : difference with theory (-90) = -3 CORRECTING DEFECT 26 (vertices=37, convex hull=88) After retessellation of defect 26, euler #=-86 (139062,412938,273790) : difference with theory (-89) = -3 CORRECTING DEFECT 27 (vertices=57, convex hull=34) After retessellation of defect 27, euler #=-85 (139066,412965,273814) : difference with theory (-88) = -3 CORRECTING DEFECT 28 (vertices=6, convex hull=15) After retessellation of defect 28, euler #=-84 (139067,412973,273822) : difference with theory (-87) = -3 CORRECTING DEFECT 29 (vertices=30, convex hull=52) After retessellation of defect 29, euler #=-83 (139076,413021,273862) : difference with theory (-86) = -3 CORRECTING DEFECT 30 (vertices=138, convex hull=167) After retessellation of defect 30, euler #=-82 (139109,413189,273998) : difference with theory (-85) = -3 CORRECTING DEFECT 31 (vertices=37, convex hull=48) After retessellation of defect 31, euler #=-81 (139122,413249,274046) : difference with theory (-84) = -3 CORRECTING DEFECT 32 (vertices=25, convex hull=25) After retessellation of defect 32, euler #=-81 (139124,413267,274062) : difference with theory (-83) = -2 CORRECTING DEFECT 33 (vertices=15, convex hull=51) After retessellation of defect 33, euler #=-80 (139135,413319,274104) : difference with theory (-82) = -2 CORRECTING DEFECT 34 (vertices=21, convex hull=19) After retessellation of defect 34, euler #=-79 (139135,413326,274112) : difference with theory (-81) = -2 CORRECTING DEFECT 35 (vertices=239, convex hull=160) After retessellation of defect 35, euler #=-78 (139218,413655,274359) : difference with theory (-80) = -2 CORRECTING DEFECT 36 (vertices=21, convex hull=63) After retessellation of defect 36, euler #=-77 (139227,413708,274404) : difference with theory (-79) = -2 CORRECTING DEFECT 37 (vertices=54, convex hull=76) After retessellation of defect 37, euler #=-76 (139251,413812,274485) : difference with theory (-78) = -2 CORRECTING DEFECT 38 (vertices=32, convex hull=27) After retessellation of defect 38, euler #=-75 (139256,413839,274508) : difference with theory (-77) = -2 CORRECTING DEFECT 39 (vertices=11, convex hull=20) After retessellation of defect 39, euler #=-74 (139257,413846,274515) : difference with theory (-76) = -2 CORRECTING DEFECT 40 (vertices=24, convex hull=47) After retessellation of defect 40, euler #=-73 (139265,413890,274552) : difference with theory (-75) = -2 CORRECTING DEFECT 41 (vertices=294, convex hull=258) After retessellation of defect 41, euler #=-72 (139397,414408,274939) : difference with theory (-74) = -2 CORRECTING DEFECT 42 (vertices=28, convex hull=51) After retessellation of defect 42, euler #=-71 (139409,414463,274983) : difference with theory (-73) = -2 CORRECTING DEFECT 43 (vertices=102, convex hull=131) After retessellation of defect 43, euler #=-70 (139468,414693,275155) : difference with theory (-72) = -2 CORRECTING DEFECT 44 (vertices=77, convex hull=35) After retessellation of defect 44, euler #=-69 (139477,414733,275187) : difference with theory (-71) = -2 CORRECTING DEFECT 45 (vertices=118, convex hull=54) After retessellation of defect 45, euler #=-68 (139488,414787,275231) : difference with theory (-70) = -2 CORRECTING DEFECT 46 (vertices=110, convex hull=141) After retessellation of defect 46, euler #=-67 (139530,414982,275385) : difference with theory (-69) = -2 CORRECTING DEFECT 47 (vertices=25, convex hull=26) After retessellation of defect 47, euler #=-66 (139532,414998,275400) : difference with theory (-68) = -2 CORRECTING DEFECT 48 (vertices=29, convex hull=55) After retessellation of defect 48, euler #=-65 (139551,415076,275460) : difference with theory (-67) = -2 CORRECTING DEFECT 49 (vertices=24, convex hull=24) After retessellation of defect 49, euler #=-64 (139555,415094,275475) : difference with theory (-66) = -2 CORRECTING DEFECT 50 (vertices=12, convex hull=18) After retessellation of defect 50, euler #=-63 (139555,415099,275481) : difference with theory (-65) = -2 CORRECTING DEFECT 51 (vertices=14, convex hull=17) After retessellation of defect 51, euler #=-62 (139558,415113,275493) : difference with theory (-64) = -2 CORRECTING DEFECT 52 (vertices=104, convex hull=73) After retessellation of defect 52, euler #=-61 (139594,415251,275596) : difference with theory (-63) = -2 CORRECTING DEFECT 53 (vertices=7, convex hull=19) After retessellation of defect 53, euler #=-60 (139595,415259,275604) : difference with theory (-62) = -2 CORRECTING DEFECT 54 (vertices=254, convex hull=248) After retessellation of defect 54, euler #=-57 (139685,415647,275905) : difference with theory (-61) = -4 CORRECTING DEFECT 55 (vertices=35, convex hull=64) After retessellation of defect 55, euler #=-56 (139699,415716,275961) : difference with theory (-60) = -4 CORRECTING DEFECT 56 (vertices=5, convex hull=19) After retessellation of defect 56, euler #=-57 (139699,415721,275965) : difference with theory (-59) = -2 CORRECTING DEFECT 57 (vertices=186, convex hull=137) After retessellation of defect 57, euler #=-56 (139722,415854,276076) : difference with theory (-58) = -2 CORRECTING DEFECT 58 (vertices=309, convex hull=107) After retessellation of defect 58, euler #=-55 (139768,416040,276217) : difference with theory (-57) = -2 CORRECTING DEFECT 59 (vertices=22, convex hull=51) After retessellation of defect 59, euler #=-54 (139777,416086,276255) : difference with theory (-56) = -2 CORRECTING DEFECT 60 (vertices=126, convex hull=82) After retessellation of defect 60, euler #=-53 (139811,416221,276357) : difference with theory (-55) = -2 CORRECTING DEFECT 61 (vertices=189, convex hull=239) After retessellation of defect 61, euler #=-52 (139905,416618,276661) : difference with theory (-54) = -2 CORRECTING DEFECT 62 (vertices=91, convex hull=96) After retessellation of defect 62, euler #=-51 (139922,416710,276737) : difference with theory (-53) = -2 CORRECTING DEFECT 63 (vertices=30, convex hull=83) After retessellation of defect 63, euler #=-50 (139938,416788,276800) : difference with theory (-52) = -2 CORRECTING DEFECT 64 (vertices=94, convex hull=153) After retessellation of defect 64, euler #=-49 (139978,416978,276951) : difference with theory (-51) = -2 CORRECTING DEFECT 65 (vertices=3458, convex hull=1569) After retessellation of defect 65, euler #=-51 (141121,421273,280101) : difference with theory (-50) = 1 CORRECTING DEFECT 66 (vertices=89, convex hull=111) After retessellation of defect 66, euler #=-50 (141154,421430,280226) : difference with theory (-49) = 1 CORRECTING DEFECT 67 (vertices=40, convex hull=46) After retessellation of defect 67, euler #=-49 (141168,421489,280272) : difference with theory (-48) = 1 CORRECTING DEFECT 68 (vertices=28, convex hull=20) After retessellation of defect 68, euler #=-48 (141171,421507,280288) : difference with theory (-47) = 1 CORRECTING DEFECT 69 (vertices=5, convex hull=30) After retessellation of defect 69, euler #=-47 (141173,421522,280302) : difference with theory (-46) = 1 CORRECTING DEFECT 70 (vertices=138, convex hull=35) After retessellation of defect 70, euler #=-46 (141183,421562,280333) : difference with theory (-45) = 1 CORRECTING DEFECT 71 (vertices=87, convex hull=62) After retessellation of defect 71, euler #=-45 (141195,421624,280384) : difference with theory (-44) = 1 CORRECTING DEFECT 72 (vertices=221, convex hull=60) After retessellation of defect 72, euler #=-44 (141204,421674,280426) : difference with theory (-43) = 1 CORRECTING DEFECT 73 (vertices=59, convex hull=84) After retessellation of defect 73, euler #=-43 (141241,421816,280532) : difference with theory (-42) = 1 CORRECTING DEFECT 74 (vertices=86, convex hull=52) After retessellation of defect 74, euler #=-42 (141250,421864,280572) : difference with theory (-41) = 1 CORRECTING DEFECT 75 (vertices=11, convex hull=17) After retessellation of defect 75, euler #=-41 (141251,421872,280580) : difference with theory (-40) = 1 CORRECTING DEFECT 76 (vertices=22, convex hull=31) After retessellation of defect 76, euler #=-40 (141254,421894,280600) : difference with theory (-39) = 1 CORRECTING DEFECT 77 (vertices=21, convex hull=28) After retessellation of defect 77, euler #=-39 (141257,421917,280621) : difference with theory (-38) = 1 CORRECTING DEFECT 78 (vertices=51, convex hull=94) After retessellation of defect 78, euler #=-38 (141284,422041,280719) : difference with theory (-37) = 1 CORRECTING DEFECT 79 (vertices=38, convex hull=73) After retessellation of defect 79, euler #=-37 (141310,422152,280805) : difference with theory (-36) = 1 CORRECTING DEFECT 80 (vertices=25, convex hull=33) After retessellation of defect 80, euler #=-36 (141313,422175,280826) : difference with theory (-35) = 1 CORRECTING DEFECT 81 (vertices=36, convex hull=59) After retessellation of defect 81, euler #=-35 (141321,422221,280865) : difference with theory (-34) = 1 CORRECTING DEFECT 82 (vertices=104, convex hull=107) After retessellation of defect 82, euler #=-34 (141330,422292,280928) : difference with theory (-33) = 1 CORRECTING DEFECT 83 (vertices=42, convex hull=91) After retessellation of defect 83, euler #=-33 (141355,422405,281017) : difference with theory (-32) = 1 CORRECTING DEFECT 84 (vertices=11, convex hull=17) After retessellation of defect 84, euler #=-32 (141356,422414,281026) : difference with theory (-31) = 1 CORRECTING DEFECT 85 (vertices=596, convex hull=349) After retessellation of defect 85, euler #=-32 (141517,423089,281540) : difference with theory (-30) = 2 CORRECTING DEFECT 86 (vertices=31, convex hull=41) After retessellation of defect 86, euler #=-31 (141526,423132,281575) : difference with theory (-29) = 2 CORRECTING DEFECT 87 (vertices=27, convex hull=20) After retessellation of defect 87, euler #=-30 (141527,423139,281582) : difference with theory (-28) = 2 CORRECTING DEFECT 88 (vertices=28, convex hull=27) After retessellation of defect 88, euler #=-29 (141529,423152,281594) : difference with theory (-27) = 2 CORRECTING DEFECT 89 (vertices=58, convex hull=71) After retessellation of defect 89, euler #=-28 (141560,423275,281687) : difference with theory (-26) = 2 CORRECTING DEFECT 90 (vertices=13, convex hull=31) After retessellation of defect 90, euler #=-27 (141562,423292,281703) : difference with theory (-25) = 2 CORRECTING DEFECT 91 (vertices=37, convex hull=63) After retessellation of defect 91, euler #=-26 (141571,423343,281746) : difference with theory (-24) = 2 CORRECTING DEFECT 92 (vertices=107, convex hull=106) After retessellation of defect 92, euler #=-24 (141595,423467,281848) : difference with theory (-23) = 1 CORRECTING DEFECT 93 (vertices=76, convex hull=83) After retessellation of defect 93, euler #=-23 (141615,423563,281925) : difference with theory (-22) = 1 CORRECTING DEFECT 94 (vertices=104, convex hull=85) After retessellation of defect 94, euler #=-22 (141646,423691,282023) : difference with theory (-21) = 1 CORRECTING DEFECT 95 (vertices=1763, convex hull=952) After retessellation of defect 95, euler #=-21 (142262,426031,283748) : difference with theory (-20) = 1 CORRECTING DEFECT 96 (vertices=47, convex hull=25) After retessellation of defect 96, euler #=-20 (142265,426048,283763) : difference with theory (-19) = 1 CORRECTING DEFECT 97 (vertices=21, convex hull=34) After retessellation of defect 97, euler #=-19 (142267,426065,283779) : difference with theory (-18) = 1 CORRECTING DEFECT 98 (vertices=32, convex hull=61) After retessellation of defect 98, euler #=-18 (142276,426114,283820) : difference with theory (-17) = 1 CORRECTING DEFECT 99 (vertices=35, convex hull=40) After retessellation of defect 99, euler #=-17 (142281,426142,283844) : difference with theory (-16) = 1 CORRECTING DEFECT 100 (vertices=36, convex hull=66) After retessellation of defect 100, euler #=-16 (142296,426215,283903) : difference with theory (-15) = 1 CORRECTING DEFECT 101 (vertices=74, convex hull=94) After retessellation of defect 101, euler #=-15 (142316,426318,283987) : difference with theory (-14) = 1 CORRECTING DEFECT 102 (vertices=175, convex hull=99) After retessellation of defect 102, euler #=-14 (142350,426463,284099) : difference with theory (-13) = 1 CORRECTING DEFECT 103 (vertices=52, convex hull=89) After retessellation of defect 103, euler #=-13 (142361,426529,284155) : difference with theory (-12) = 1 CORRECTING DEFECT 104 (vertices=26, convex hull=66) After retessellation of defect 104, euler #=-12 (142370,426577,284195) : difference with theory (-11) = 1 CORRECTING DEFECT 105 (vertices=80, convex hull=108) After retessellation of defect 105, euler #=-11 (142397,426703,284295) : difference with theory (-10) = 1 CORRECTING DEFECT 106 (vertices=84, convex hull=75) After retessellation of defect 106, euler #=-10 (142423,426814,284381) : difference with theory (-9) = 1 CORRECTING DEFECT 107 (vertices=123, convex hull=131) After retessellation of defect 107, euler #=-9 (142462,426987,284516) : difference with theory (-8) = 1 CORRECTING DEFECT 108 (vertices=205, convex hull=163) After retessellation of defect 108, euler #=-8 (142480,427114,284626) : difference with theory (-7) = 1 CORRECTING DEFECT 109 (vertices=48, convex hull=40) After retessellation of defect 109, euler #=-7 (142484,427139,284648) : difference with theory (-6) = 1 CORRECTING DEFECT 110 (vertices=63, convex hull=99) After retessellation of defect 110, euler #=-6 (142521,427295,284768) : difference with theory (-5) = 1 CORRECTING DEFECT 111 (vertices=55, convex hull=79) After retessellation of defect 111, euler #=-5 (142535,427372,284832) : difference with theory (-4) = 1 CORRECTING DEFECT 112 (vertices=16, convex hull=27) After retessellation of defect 112, euler #=-4 (142535,427379,284840) : difference with theory (-3) = 1 CORRECTING DEFECT 113 (vertices=133, convex hull=163) After retessellation of defect 113, euler #=-3 (142570,427555,284982) : difference with theory (-2) = 1 CORRECTING DEFECT 114 (vertices=166, convex hull=156) After retessellation of defect 114, euler #=-2 (142631,427805,285172) : difference with theory (-1) = 1 CORRECTING DEFECT 115 (vertices=23, convex hull=65) After retessellation of defect 115, euler #=-1 (142642,427858,285215) : difference with theory (0) = 1 CORRECTING DEFECT 116 (vertices=243, convex hull=71) After retessellation of defect 116, euler #=-1 (142665,427964,285298) : difference with theory (1) = 2 CORRECTING DEFECT 117 (vertices=36, convex hull=63) After retessellation of defect 117, euler #=0 (142674,428016,285342) : difference with theory (2) = 2 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.90 +- 0.32 (0.05-->14.37) (max @ vno 98265 --> 146557) face area 0.00 +- 0.00 (0.00-->0.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.90 +- 0.32 (0.05-->14.37) (max @ vno 98265 --> 146557) face area 0.00 +- 0.00 (0.00-->0.00) tessellation finished, orienting corrected surface... 359 mutations (33.9%), 700 crossovers (66.1%), 576 vertices were eliminated building final representation... 12946 vertices and 0 faces have been removed from triangulation after topology correction, eno=0 (nv=142674, nf=285342, ne=428016, g=1) writing corrected surface to /home/neuro/joost/redes/maranon/freesurfer/28646/surf/lh.orig... defective orientation at vertex 36030(37143) with faces 71741 and 269922 defective orientation at vertex 36030(37142) with faces 71741 and 269893 defective orientation at vertex 37142(36030) with faces 71741 and 269893 defective orientation at vertex 37142(37143) with faces 71741 and 269921 defective orientation at vertex 37143(37142) with faces 71741 and 269921 defective orientation at vertex 37143(36030) with faces 71741 and 269922 edge (83536<-->84913) has one single face 165632 ! edge (83536<-->84932) has one single face 275962 ! edge (83536<-->86174) has no face ! edge (84913<-->83536) has one single face 165632 ! edge (84913<-->86174) has one single face 168324 ! edge (84932<-->86174) has one single face 275964 ! edge (84932<-->83536) has one single face 275962 ! edge (86174<-->84913) has one single face 168324 ! edge (86174<-->84932) has one single face 275964 ! edge (86174<-->83536) has no face ! 0.004 % of the vertices (6 vertices) exhibit an orientation change topology fixing took 149.4 minutes edge 83536 <--> 84913 has 1 face(s)! (165632) 83536 84913 83537 !!! edge 83536 <--> 84932 has 1 face(s)! (275962) 83536 83555 84932 !!! edge 83536 <--> 86174 has 0 face(s)! () 83536 83555 84932 !!! edge 84913 <--> 86174 has 1 face(s)! (168324) 84913 86174 84933 !!! edge 84932 <--> 86174 has 1 face(s)! (275964) 84932 86185 86174 !!! 5 defective edges removing intersecting faces 000: 2174 intersecting 001: 278 intersecting 002: 181 intersecting 003: 148 intersecting 004: 133 intersecting 005: 112 intersecting 006: 102 intersecting 007: 72 intersecting 008: 43 intersecting 009: 40 intersecting 010: 42 intersecting 011: 39 intersecting 012: 45 intersecting 013: 38 intersecting 014: 36 intersecting 015: 35 intersecting 016: 29 intersecting 017: 25 intersecting 018: 23 intersecting 019: 22 intersecting expanding nbhd size to 2 020: 22 intersecting expanding nbhd size to 3 021: 22 intersecting 022: 26 intersecting 023: 30 intersecting 024: 13 intersecting mris_euler_number ../surf/lh.orig mris_fix_topology failed! (euler number != 2) Trying mris_topo_fixer... cp ../surf/lh.orig.nofix ../surf/lh.orig euler # = v-e+f = 2g-2: 142674 - 428015 + 285342 = 1 --> 1 holes F =2V-4: 285342 != 285348-4 (2) 2E=3F: 856030 != 856026 (4) total defect index = 5 cp ../surf/lh.qsphere.nofix ../surf/lh.qsphere cp ../surf/lh.smoothwm.nofix ../surf/lh.smoothwm /home/neuro/joost/redes/maranon/freesurfer/28646/scripts mris_topo_fixer -mgz -warnings 28646 lh verbose mode on (medium mode): printing warnings Before topology correction, eno=-316 (nv=155620, nf=311872, ne=467808, g=159) Surface Diagnostics: eno=-316 (nv=155620, nf=311872, ne=467808) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 The original surface is a valid manifold Counting the number of connected components The original surface has one component The original surface does not self-intersect The surface has 159 loops (X=-316) Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 10 iterations identify defects... marking ambiguous vertices... 31526 ambiguous faces found in tessellation segmenting defects... analyzing defects for overlaps... INFO: assuming .mgz format reading input surface /home/neuro/joost/redes/maranon/freesurfer/28646/surf/lh.orig... reading brain volume from brain... reading wm segmentation from wm... Detecting contrast direction: right direction [ GM (80.39) < WM (93.60) ] Computing Initial Surface Statistics -face loglikelihood: -5.9862 (-2.9931) -vertex loglikelihood: -5.8724 (-2.9362) -normal dot loglikelihood: -3.5573 (-3.5573) -quad curv loglikelihood: -5.7849 (-2.8924) Total Loglikelihood : -21.2007 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 1 with euler number 1 (0 loops) Nothing to correct for defect 1!! AFTER CORRECTION, EULER IS -316 Surface Diagnostics: eno=-316 (nv=155620, nf=311872, ne=467808) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 2 with euler number -15 (8 loops) computing statistics for defect 2: 2810 vertices location: [ (139,142,71) - average intensity = 85.707 ] -gray ( 78.78 , 5.96 ) -white ( 92.27 , 3.10 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (78.778107 [log = -2.782974 ]- 92.270035 [log = -2.062623 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 5366(5366) - loop = 1 (8) - ntries = [250,2156] BEST FITNESS (o)is -2.41288 mri =0.000 curv = 0.926 unmri = -1.290 ( f=0.00 , v=0.00 , c=0.93 , q= 1.85 ) ( f=0.00 , v=0.00 , c=0.93 , q= 1.85 ) BEST FITNESS (o)is 0.86153 mri =0.000 curv = 0.800 unmri = -4.060 ( f=0.00 , v=0.00 , c=0.80 , q= 1.60 ) ( f=0.00 , v=0.00 , c=0.80 , q= 1.60 ) BEST FITNESS (M) is 1.69744 mri =0.000 curv = 0.855 unmri = -5.119 ( f=0.00 , v=0.00 , c=0.86 , q= 1.71 ) ( f=0.00 , v=0.00 , c=0.86 , q= 1.71 ) BEST FITNESS (M) is 10.96588 mri =0.000 curv = 1.095 unmri = -15.345 ( f=0.00 , v=0.00 , c=1.09 , q= 2.19 ) ( f=0.00 , v=0.00 , c=1.09 , q= 2.19 ) BEST FITNESS (o)is 18.70541 mri =0.000 curv = 0.812 unmri = -21.954 ( f=0.00 , v=0.00 , c=0.81 , q= 1.62 ) ( f=0.00 , v=0.00 , c=0.81 , q= 1.62 ) BEST FITNESS (M) is 37.77852 mri =0.000 curv = 1.031 unmri = -41.901 ( f=0.00 , v=0.00 , c=1.03 , q= 2.06 ) ( f=0.00 , v=0.00 , c=1.03 , q= 2.06 ) 562 patches have been generated - 250 self-intersected max face = 5366(5502) - loop = 2 (8) - ntries = [250,2156] BEST FITNESS (o)is 38.16387 mri =0.000 curv = 1.015 unmri = -42.225 ( f=0.00 , v=0.00 , c=1.02 , q= 2.03 ) ( f=0.00 , v=0.00 , c=1.02 , q= 2.03 ) BEST FITNESS (M) is 57.22668 mri =0.000 curv = 0.998 unmri = -61.220 ( f=0.00 , v=0.00 , c=1.00 , q= 2.00 ) ( f=0.00 , v=0.00 , c=1.00 , q= 2.00 ) BEST FITNESS (M) is 59.25996 mri =0.000 curv = 1.106 unmri = -63.685 ( f=0.00 , v=0.00 , c=1.11 , q= 2.21 ) ( f=0.00 , v=0.00 , c=1.11 , q= 2.21 ) BEST FITNESS (M) is 62.57229 mri =0.000 curv = 0.961 unmri = -66.417 ( f=0.00 , v=0.00 , c=0.96 , q= 1.92 ) ( f=0.00 , v=0.00 , c=0.96 , q= 1.92 ) BEST FITNESS (M) is 64.65492 mri =0.000 curv = 0.856 unmri = -68.077 ( f=0.00 , v=0.00 , c=0.86 , q= 1.71 ) ( f=0.00 , v=0.00 , c=0.86 , q= 1.71 ) 573 patches have been generated - 265 self-intersected max face = 5366(5630) - loop = 3 (8) - ntries = [250,2156] BEST FITNESS (M) is 3.57512 mri =0.000 curv = 19.112 unmri = -80.021 ( f=0.00 , v=0.00 , c=19.11 , q= 38.22 ) ( f=0.00 , v=0.00 , c=19.11 , q= 38.22 ) BEST FITNESS (o)is 51.97765 mri =0.000 curv = 2.607 unmri = -62.405 ( f=0.00 , v=0.00 , c=2.61 , q= 5.21 ) ( f=0.00 , v=0.00 , c=2.61 , q= 5.21 ) BEST FITNESS (M) is 77.63940 mri =0.000 curv = 0.977 unmri = -81.546 ( f=0.00 , v=0.00 , c=0.98 , q= 1.95 ) ( f=0.00 , v=0.00 , c=0.98 , q= 1.95 ) BEST FITNESS (M) is 78.87951 mri =0.000 curv = 1.136 unmri = -83.423 ( f=0.00 , v=0.00 , c=1.14 , q= 2.27 ) ( f=0.00 , v=0.00 , c=1.14 , q= 2.27 ) 574 patches have been generated - 262 self-intersected max face = 5366(5758) - loop = 4 (8) - ntries = [250,2156] BEST FITNESS (o)is 58.67480 mri =0.000 curv = 1.245 unmri = -63.655 ( f=0.00 , v=0.00 , c=1.25 , q= 2.49 ) ( f=0.00 , v=0.00 , c=1.25 , q= 2.49 ) BEST FITNESS (o)is 78.17986 mri =0.000 curv = 1.159 unmri = -82.818 ( f=0.00 , v=0.00 , c=1.16 , q= 2.32 ) ( f=0.00 , v=0.00 , c=1.16 , q= 2.32 ) BEST FITNESS (M) is 79.72311 mri =0.000 curv = 1.194 unmri = -84.497 ( f=0.00 , v=0.00 , c=1.19 , q= 2.39 ) ( f=0.00 , v=0.00 , c=1.19 , q= 2.39 ) BEST FITNESS (M) is 80.72421 mri =0.000 curv = 1.303 unmri = -85.936 ( f=0.00 , v=0.00 , c=1.30 , q= 2.61 ) ( f=0.00 , v=0.00 , c=1.30 , q= 2.61 ) BEST FITNESS (M) is 82.93549 mri =0.000 curv = 1.562 unmri = -89.182 ( f=0.00 , v=0.00 , c=1.56 , q= 3.12 ) ( f=0.00 , v=0.00 , c=1.56 , q= 3.12 ) BEST FITNESS (M) is 83.73037 mri =0.000 curv = 1.325 unmri = -89.030 ( f=0.00 , v=0.00 , c=1.32 , q= 2.65 ) ( f=0.00 , v=0.00 , c=1.32 , q= 2.65 ) BEST FITNESS (M) is 87.87942 mri =0.000 curv = 1.401 unmri = -93.484 ( f=0.00 , v=0.00 , c=1.40 , q= 2.80 ) ( f=0.00 , v=0.00 , c=1.40 , q= 2.80 ) BEST FITNESS (M) is 104.48377 mri =0.000 curv = 2.304 unmri = -113.698 ( f=0.00 , v=0.00 , c=2.30 , q= 4.61 ) ( f=0.00 , v=0.00 , c=2.30 , q= 4.61 ) 634 patches have been generated - 409 self-intersected max face = 5366(6022) - loop = 5 (8) - ntries = [250,2156] BEST FITNESS (o)is 104.14556 mri =0.000 curv = 2.286 unmri = -113.289 ( f=0.00 , v=0.00 , c=2.29 , q= 4.57 ) ( f=0.00 , v=0.00 , c=2.29 , q= 4.57 ) BEST FITNESS (M) is 105.42056 mri =0.000 curv = 2.396 unmri = -115.005 ( f=0.00 , v=0.00 , c=2.40 , q= 4.79 ) ( f=0.00 , v=0.00 , c=2.40 , q= 4.79 ) BEST FITNESS (M) is 105.42667 mri =0.000 curv = 2.365 unmri = -114.888 ( f=0.00 , v=0.00 , c=2.37 , q= 4.73 ) ( f=0.00 , v=0.00 , c=2.37 , q= 4.73 ) BEST FITNESS (M) is 105.47661 mri =0.000 curv = 2.376 unmri = -114.982 ( f=0.00 , v=0.00 , c=2.38 , q= 4.75 ) ( f=0.00 , v=0.00 , c=2.38 , q= 4.75 ) BEST FITNESS (M) is 106.06488 mri =0.000 curv = 2.631 unmri = -116.587 ( f=0.00 , v=0.00 , c=2.63 , q= 5.26 ) ( f=0.00 , v=0.00 , c=2.63 , q= 5.26 ) BEST FITNESS (M) is 109.59163 mri =0.000 curv = 2.428 unmri = -119.305 ( f=0.00 , v=0.00 , c=2.43 , q= 4.86 ) ( f=0.00 , v=0.00 , c=2.43 , q= 4.86 ) 632 patches have been generated - 401 self-intersected max face = 5366(6302) - loop = 6 (8) - ntries = [250,2156] BEST FITNESS (o)is 104.37458 mri =0.000 curv = 2.431 unmri = -114.100 ( f=0.00 , v=0.00 , c=2.43 , q= 4.86 ) ( f=0.00 , v=0.00 , c=2.43 , q= 4.86 ) BEST FITNESS (o)is 109.37661 mri =0.000 curv = 2.410 unmri = -119.018 ( f=0.00 , v=0.00 , c=2.41 , q= 4.82 ) ( f=0.00 , v=0.00 , c=2.41 , q= 4.82 ) BEST FITNESS (M) is 109.82499 mri =0.000 curv = 2.555 unmri = -120.046 ( f=0.00 , v=0.00 , c=2.56 , q= 5.11 ) ( f=0.00 , v=0.00 , c=2.56 , q= 5.11 ) BEST FITNESS (M) is 109.85281 mri =0.000 curv = 2.548 unmri = -120.046 ( f=0.00 , v=0.00 , c=2.55 , q= 5.10 ) ( f=0.00 , v=0.00 , c=2.55 , q= 5.10 ) BEST FITNESS (M) is 109.87351 mri =0.000 curv = 2.539 unmri = -120.028 ( f=0.00 , v=0.00 , c=2.54 , q= 5.08 ) ( f=0.00 , v=0.00 , c=2.54 , q= 5.08 ) BEST FITNESS (M) is 110.94561 mri =0.000 curv = 2.676 unmri = -121.648 ( f=0.00 , v=0.00 , c=2.68 , q= 5.35 ) ( f=0.00 , v=0.00 , c=2.68 , q= 5.35 ) 598 patches have been generated - 357 self-intersected max face = 5366(6362) - loop = 7 (8) - ntries = [250,2156] BEST FITNESS (o)is 110.82836 mri =0.000 curv = 2.656 unmri = -121.453 ( f=0.00 , v=0.00 , c=2.66 , q= 5.31 ) ( f=0.00 , v=0.00 , c=2.66 , q= 5.31 ) BEST FITNESS (M) is 111.44323 mri =0.000 curv = 2.737 unmri = -122.391 ( f=0.00 , v=0.00 , c=2.74 , q= 5.47 ) ( f=0.00 , v=0.00 , c=2.74 , q= 5.47 ) BEST FITNESS (M) is 111.74348 mri =0.000 curv = 2.701 unmri = -122.548 ( f=0.00 , v=0.00 , c=2.70 , q= 5.40 ) ( f=0.00 , v=0.00 , c=2.70 , q= 5.40 ) 550 patches have been generated - 281 self-intersected max face = 5366(6426) - loop = 8 (8) - ntries = [250,2156] BEST FITNESS (o)is 111.62611 mri =0.000 curv = 2.682 unmri = -122.354 ( f=0.00 , v=0.00 , c=2.68 , q= 5.36 ) ( f=0.00 , v=0.00 , c=2.68 , q= 5.36 ) BEST FITNESS (M) is 112.24453 mri =0.000 curv = 2.762 unmri = -123.291 ( f=0.00 , v=0.00 , c=2.76 , q= 5.52 ) ( f=0.00 , v=0.00 , c=2.76 , q= 5.52 ) 535 patches have been generated - 261 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : 112.24452 # generated patches : 4658 (2486 self-intersecting) AFTER CORRECTION, EULER IS -300 Surface Diagnostics: eno=-300 (nv=156186, nf=312972, ne=469458) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 3 with euler number -1 (1 loops) computing statistics for defect 3: 230 vertices location: [ (167,143,61) - average intensity = 86.683 ] -gray ( 81.71 , 3.69 ) -white ( 93.02 , 3.28 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (81.708817 [log = -2.202498 ]- 93.018593 [log = -2.140016 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 378(378) - loop = 1 (1) - ntries = [58,161] BEST FITNESS (o)is 1.89698 mri =0.000 curv = 0.477 unmri = -3.806 ( f=0.00 , v=0.00 , c=0.48 , q= 0.95 ) ( f=0.00 , v=0.00 , c=0.48 , q= 0.95 ) BEST FITNESS (o)is 1.92066 mri =0.000 curv = 0.471 unmri = -3.806 ( f=0.00 , v=0.00 , c=0.47 , q= 0.94 ) ( f=0.00 , v=0.00 , c=0.47 , q= 0.94 ) 123 patches have been generated - 64 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : 1.92066 # generated patches : 123 (64 self-intersecting) AFTER CORRECTION, EULER IS -298 Surface Diagnostics: eno=-298 (nv=156212, nf=313020, ne=469530) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 4 with euler number -1 (1 loops) computing statistics for defect 4: 47 vertices location: [ (156,106,59) - average intensity = 89.957 ] -gray ( 83.35 , 3.98 ) -white ( 93.33 , 3.06 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (83.353798 [log = -2.369285 ]- 93.329338 [log = -2.053812 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 80(80) - loop = 1 (1) - ntries = [13,42] BEST FITNESS (o)is -54.57074 mri =0.000 curv = 13.126 unmri = 2.068 ( f=0.00 , v=0.00 , c=13.13 , q= 26.25 ) ( f=0.00 , v=0.00 , c=13.13 , q= 26.25 ) BEST FITNESS (o)is -3.29415 mri =0.000 curv = 1.052 unmri = -0.912 ( f=0.00 , v=0.00 , c=1.05 , q= 2.10 ) ( f=0.00 , v=0.00 , c=1.05 , q= 2.10 ) 26 patches have been generated - 11 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -3.29415 # generated patches : 26 (11 self-intersecting) AFTER CORRECTION, EULER IS -296 Surface Diagnostics: eno=-296 (nv=156240, nf=313072, ne=469608) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 5 with euler number 1 (0 loops) Nothing to correct for defect 5!! AFTER CORRECTION, EULER IS -296 Surface Diagnostics: eno=-296 (nv=156240, nf=313072, ne=469608) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 6 with euler number -1 (1 loops) computing statistics for defect 6: 95 vertices location: [ (174,124,65) - average intensity = 88.573 ] -gray ( 82.57 , 3.58 ) -white ( 93.57 , 2.65 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (82.565941 [log = -2.387940 ]- 93.574150 [log = -1.915976 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 164(164) - loop = 1 (1) - ntries = [26,76] BEST FITNESS (o)is -14.51587 mri =0.000 curv = 2.734 unmri = 3.580 ( f=0.00 , v=0.00 , c=2.73 , q= 5.47 ) ( f=0.00 , v=0.00 , c=2.73 , q= 5.47 ) BEST FITNESS (o)is -10.30205 mri =0.000 curv = 0.465 unmri = 8.442 ( f=0.00 , v=0.00 , c=0.46 , q= 0.93 ) ( f=0.00 , v=0.00 , c=0.46 , q= 0.93 ) BEST FITNESS (o)is -8.92808 mri =0.000 curv = 1.656 unmri = 2.305 ( f=0.00 , v=0.00 , c=1.66 , q= 3.31 ) ( f=0.00 , v=0.00 , c=1.66 , q= 3.31 ) BEST FITNESS (o)is -3.98006 mri =0.000 curv = 0.476 unmri = 2.075 ( f=0.00 , v=0.00 , c=0.48 , q= 0.95 ) ( f=0.00 , v=0.00 , c=0.48 , q= 0.95 ) BEST FITNESS (o)is -1.26209 mri =0.000 curv = 0.509 unmri = -0.775 ( f=0.00 , v=0.00 , c=0.51 , q= 1.02 ) ( f=0.00 , v=0.00 , c=0.51 , q= 1.02 ) BEST FITNESS (M) is -0.86946 mri =0.000 curv = 1.488 unmri = -5.084 ( f=0.00 , v=0.00 , c=1.49 , q= 2.98 ) ( f=0.00 , v=0.00 , c=1.49 , q= 2.98 ) BEST FITNESS (M) is 0.65320 mri =0.000 curv = 1.124 unmri = -5.148 ( f=0.00 , v=0.00 , c=1.12 , q= 2.25 ) ( f=0.00 , v=0.00 , c=1.12 , q= 2.25 ) BEST FITNESS (M) is 2.18195 mri =0.000 curv = 0.764 unmri = -5.239 ( f=0.00 , v=0.00 , c=0.76 , q= 1.53 ) ( f=0.00 , v=0.00 , c=0.76 , q= 1.53 ) 53 patches have been generated - 12 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : 2.18195 # generated patches : 53 (12 self-intersecting) AFTER CORRECTION, EULER IS -294 Surface Diagnostics: eno=-294 (nv=156278, nf=313144, ne=469716) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 7 with euler number -1 (1 loops) computing statistics for defect 7: 49 vertices location: [ (167,139,66) - average intensity = 87.005 ] -gray ( 81.09 , 3.69 ) -white ( 94.42 , 3.03 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (81.092606 [log = -2.256103 ]- 94.422791 [log = -2.065637 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 75(75) - loop = 1 (1) - ntries = [12,40] BEST FITNESS (o)is -2.91633 mri =0.000 curv = 0.283 unmri = 1.786 ( f=0.00 , v=0.00 , c=0.28 , q= 0.57 ) ( f=0.00 , v=0.00 , c=0.28 , q= 0.57 ) BEST FITNESS (o)is -2.83341 mri =0.000 curv = 0.261 unmri = 1.789 ( f=0.00 , v=0.00 , c=0.26 , q= 0.52 ) ( f=0.00 , v=0.00 , c=0.26 , q= 0.52 ) 24 patches have been generated - 9 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -2.83341 # generated patches : 24 (9 self-intersecting) AFTER CORRECTION, EULER IS -292 Surface Diagnostics: eno=-292 (nv=156300, nf=313184, ne=469776) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 8 with euler number -5 (3 loops) computing statistics for defect 8: 499 vertices location: [ (178,161,76) - average intensity = 85.444 ] -gray ( 80.76 , 4.49 ) -white ( 93.56 , 3.32 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (80.756531 [log = -2.412141 ]- 93.560715 [log = -2.189570 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 945(945) - loop = 1 (3) - ntries = [143,388] BEST FITNESS (o)is -15.80927 mri =0.000 curv = 3.604 unmri = 1.394 ( f=0.00 , v=0.00 , c=3.60 , q= 7.21 ) ( f=0.00 , v=0.00 , c=3.60 , q= 7.21 ) BEST FITNESS (o)is -2.35972 mri =0.000 curv = 1.944 unmri = -5.418 ( f=0.00 , v=0.00 , c=1.94 , q= 3.89 ) ( f=0.00 , v=0.00 , c=1.94 , q= 3.89 ) BEST FITNESS (o)is 1.04667 mri =0.000 curv = 1.178 unmri = -5.758 ( f=0.00 , v=0.00 , c=1.18 , q= 2.36 ) ( f=0.00 , v=0.00 , c=1.18 , q= 2.36 ) BEST FITNESS (o)is 1.06236 mri =0.000 curv = 1.177 unmri = -5.769 ( f=0.00 , v=0.00 , c=1.18 , q= 2.35 ) ( f=0.00 , v=0.00 , c=1.18 , q= 2.35 ) BEST FITNESS (M) is 17.34164 mri =0.000 curv = 1.641 unmri = -23.905 ( f=0.00 , v=0.00 , c=1.64 , q= 3.28 ) ( f=0.00 , v=0.00 , c=1.64 , q= 3.28 ) BEST FITNESS (M) is 18.18011 mri =0.000 curv = 1.369 unmri = -23.655 ( f=0.00 , v=0.00 , c=1.37 , q= 2.74 ) ( f=0.00 , v=0.00 , c=1.37 , q= 2.74 ) BEST FITNESS (M) is 18.51548 mri =0.000 curv = 1.357 unmri = -23.944 ( f=0.00 , v=0.00 , c=1.36 , q= 2.71 ) ( f=0.00 , v=0.00 , c=1.36 , q= 2.71 ) BEST FITNESS (M) is 42.11295 mri =0.000 curv = 1.745 unmri = -49.092 ( f=0.00 , v=0.00 , c=1.74 , q= 3.49 ) ( f=0.00 , v=0.00 , c=1.74 , q= 3.49 ) 320 patches have been generated - 143 self-intersected max face = 945(1169) - loop = 2 (3) - ntries = [143,388] BEST FITNESS (o)is 34.84443 mri =0.000 curv = 3.214 unmri = -47.700 ( f=0.00 , v=0.00 , c=3.21 , q= 6.43 ) ( f=0.00 , v=0.00 , c=3.21 , q= 6.43 ) BEST FITNESS (M) is 46.03530 mri =0.000 curv = 2.180 unmri = -54.756 ( f=0.00 , v=0.00 , c=2.18 , q= 4.36 ) ( f=0.00 , v=0.00 , c=2.18 , q= 4.36 ) BEST FITNESS (o)is 47.11345 mri =0.000 curv = 1.600 unmri = -53.514 ( f=0.00 , v=0.00 , c=1.60 , q= 3.20 ) ( f=0.00 , v=0.00 , c=1.60 , q= 3.20 ) BEST FITNESS (M) is 50.29903 mri =0.000 curv = 1.787 unmri = -57.446 ( f=0.00 , v=0.00 , c=1.79 , q= 3.57 ) ( f=0.00 , v=0.00 , c=1.79 , q= 3.57 ) 289 patches have been generated - 83 self-intersected max face = 945(1253) - loop = 3 (3) - ntries = [143,388] BEST FITNESS (o)is 43.74175 mri =0.000 curv = 1.699 unmri = -50.538 ( f=0.00 , v=0.00 , c=1.70 , q= 3.40 ) ( f=0.00 , v=0.00 , c=1.70 , q= 3.40 ) BEST FITNESS (M) is 51.36536 mri =0.000 curv = 2.023 unmri = -59.458 ( f=0.00 , v=0.00 , c=2.02 , q= 4.05 ) ( f=0.00 , v=0.00 , c=2.02 , q= 4.05 ) BEST FITNESS (M) is 55.07160 mri =0.000 curv = 2.042 unmri = -63.239 ( f=0.00 , v=0.00 , c=2.04 , q= 4.08 ) ( f=0.00 , v=0.00 , c=2.04 , q= 4.08 ) 330 patches have been generated - 181 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : 55.07160 # generated patches : 939 (407 self-intersecting) AFTER CORRECTION, EULER IS -286 Surface Diagnostics: eno=-286 (nv=156536, nf=313644, ne=470466) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 9 with euler number 1 (0 loops) Nothing to correct for defect 9!! AFTER CORRECTION, EULER IS -286 Surface Diagnostics: eno=-286 (nv=156536, nf=313644, ne=470466) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 10 with euler number -1 (1 loops) computing statistics for defect 10: 42 vertices location: [ (174,112,67) - average intensity = 88.938 ] -gray ( 82.09 , 5.40 ) -white ( 94.19 , 3.97 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (82.087914 [log = -2.329720 ]- 94.187027 [log = -2.323951 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 65(65) - loop = 1 (1) - ntries = [11,36] BEST FITNESS (o)is -0.74472 mri =0.000 curv = 0.260 unmri = -0.296 ( f=0.00 , v=0.00 , c=0.26 , q= 0.52 ) ( f=0.00 , v=0.00 , c=0.26 , q= 0.52 ) BEST FITNESS (o)is -0.26404 mri =0.000 curv = 0.186 unmri = -0.478 ( f=0.00 , v=0.00 , c=0.19 , q= 0.37 ) ( f=0.00 , v=0.00 , c=0.19 , q= 0.37 ) BEST FITNESS (o)is -0.26404 mri =0.000 curv = 0.186 unmri = -0.478 ( f=0.00 , v=0.00 , c=0.19 , q= 0.37 ) ( f=0.00 , v=0.00 , c=0.19 , q= 0.37 ) 22 patches have been generated - 1 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -0.26404 # generated patches : 22 (1 self-intersecting) AFTER CORRECTION, EULER IS -284 Surface Diagnostics: eno=-284 (nv=156560, nf=313688, ne=470532) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 11 with euler number -1 (1 loops) computing statistics for defect 11: 142 vertices location: [ (177,133,69) - average intensity = 90.869 ] -gray ( 82.51 , 4.19 ) -white ( 95.14 , 3.21 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (82.507759 [log = -2.439578 ]- 95.141418 [log = -2.111192 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 247(247) - loop = 1 (1) - ntries = [38,109] BEST FITNESS (o)is -18.11197 mri =0.000 curv = 1.031 unmri = 13.987 ( f=0.00 , v=0.00 , c=1.03 , q= 2.06 ) ( f=0.00 , v=0.00 , c=1.03 , q= 2.06 ) BEST FITNESS (M) is -2.64286 mri =0.000 curv = 1.121 unmri = -1.841 ( f=0.00 , v=0.00 , c=1.12 , q= 2.24 ) ( f=0.00 , v=0.00 , c=1.12 , q= 2.24 ) BEST FITNESS (M) is 0.76394 mri =0.000 curv = 1.535 unmri = -6.903 ( f=0.00 , v=0.00 , c=1.53 , q= 3.07 ) ( f=0.00 , v=0.00 , c=1.53 , q= 3.07 ) BEST FITNESS (M) is 1.28051 mri =0.000 curv = 1.119 unmri = -5.757 ( f=0.00 , v=0.00 , c=1.12 , q= 2.24 ) ( f=0.00 , v=0.00 , c=1.12 , q= 2.24 ) BEST FITNESS (M) is 2.87628 mri =0.000 curv = 1.021 unmri = -6.962 ( f=0.00 , v=0.00 , c=1.02 , q= 2.04 ) ( f=0.00 , v=0.00 , c=1.02 , q= 2.04 ) 79 patches have been generated - 22 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : 2.87628 # generated patches : 79 (22 self-intersecting) AFTER CORRECTION, EULER IS -282 Surface Diagnostics: eno=-282 (nv=156616, nf=313796, ne=470694) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 12 with euler number -1 (1 loops) computing statistics for defect 12: 61 vertices location: [ (171,104,70) - average intensity = 87.242 ] -gray ( 82.18 , 3.76 ) -white ( 92.97 , 3.42 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (82.179459 [log = -2.398095 ]- 92.970428 [log = -2.172545 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 98(98) - loop = 1 (1) - ntries = [16,49] BEST FITNESS (o)is -8.71823 mri =0.000 curv = 1.798 unmri = 1.527 ( f=0.00 , v=0.00 , c=1.80 , q= 3.60 ) ( f=0.00 , v=0.00 , c=1.80 , q= 3.60 ) BEST FITNESS (o)is -3.37515 mri =0.000 curv = 1.120 unmri = -1.106 ( f=0.00 , v=0.00 , c=1.12 , q= 2.24 ) ( f=0.00 , v=0.00 , c=1.12 , q= 2.24 ) BEST FITNESS (M) is -1.56585 mri =0.000 curv = 1.886 unmri = -5.977 ( f=0.00 , v=0.00 , c=1.89 , q= 3.77 ) ( f=0.00 , v=0.00 , c=1.89 , q= 3.77 ) 32 patches have been generated - 8 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -1.56585 # generated patches : 32 (8 self-intersecting) AFTER CORRECTION, EULER IS -280 Surface Diagnostics: eno=-280 (nv=156646, nf=313852, ne=470778) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 13 with euler number -1 (1 loops) computing statistics for defect 13: 76 vertices location: [ (136,126,72) - average intensity = 88.549 ] -gray ( 82.49 , 3.08 ) -white ( 94.51 , 3.34 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (82.493797 [log = -2.115060 ]- 94.510773 [log = -2.164782 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 126(126) - loop = 1 (1) - ntries = [20,60] BEST FITNESS (o)is -5.03678 mri =0.000 curv = 0.509 unmri = 3.002 ( f=0.00 , v=0.00 , c=0.51 , q= 1.02 ) ( f=0.00 , v=0.00 , c=0.51 , q= 1.02 ) BEST FITNESS (M) is -1.96725 mri =0.000 curv = 1.511 unmri = -4.076 ( f=0.00 , v=0.00 , c=1.51 , q= 3.02 ) ( f=0.00 , v=0.00 , c=1.51 , q= 3.02 ) 40 patches have been generated - 4 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -1.96725 # generated patches : 40 (4 self-intersecting) AFTER CORRECTION, EULER IS -278 Surface Diagnostics: eno=-278 (nv=156668, nf=313892, ne=470838) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 14 with euler number -1 (1 loops) computing statistics for defect 14: 60 vertices location: [ (148,142,73) - average intensity = 82.698 ] -gray ( 79.52 , 5.48 ) -white ( 91.45 , 3.14 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (79.523926 [log = -2.906595 ]- 91.448509 [log = -2.141440 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 97(97) - loop = 1 (1) - ntries = [16,49] BEST FITNESS (o)is -19.60515 mri =0.000 curv = 1.701 unmri = 12.801 ( f=0.00 , v=0.00 , c=1.70 , q= 3.40 ) ( f=0.00 , v=0.00 , c=1.70 , q= 3.40 ) BEST FITNESS (o)is -17.66473 mri =0.000 curv = 1.247 unmri = 12.677 ( f=0.00 , v=0.00 , c=1.25 , q= 2.49 ) ( f=0.00 , v=0.00 , c=1.25 , q= 2.49 ) BEST FITNESS (o)is -3.57560 mri =0.000 curv = 0.440 unmri = 1.815 ( f=0.00 , v=0.00 , c=0.44 , q= 0.88 ) ( f=0.00 , v=0.00 , c=0.44 , q= 0.88 ) 32 patches have been generated - 9 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -3.57560 # generated patches : 32 (9 self-intersecting) AFTER CORRECTION, EULER IS -276 Surface Diagnostics: eno=-276 (nv=156698, nf=313948, ne=470922) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 15 with euler number -1 (1 loops) computing statistics for defect 15: 63 vertices location: [ (143,83,76) - average intensity = 88.504 ] -gray ( 82.47 , 3.25 ) -white ( 93.61 , 3.35 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (82.468513 [log = -2.125577 ]- 93.611794 [log = -2.136543 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 103(103) - loop = 1 (1) - ntries = [16,51] BEST FITNESS (o)is -6.03192 mri =0.000 curv = 0.898 unmri = 2.438 ( f=0.00 , v=0.00 , c=0.90 , q= 1.80 ) ( f=0.00 , v=0.00 , c=0.90 , q= 1.80 ) BEST FITNESS (M) is -4.70150 mri =0.000 curv = 1.953 unmri = -3.110 ( f=0.00 , v=0.00 , c=1.95 , q= 3.91 ) ( f=0.00 , v=0.00 , c=1.95 , q= 3.91 ) 32 patches have been generated - 10 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -4.70150 # generated patches : 32 (10 self-intersecting) AFTER CORRECTION, EULER IS -274 Surface Diagnostics: eno=-274 (nv=156738, nf=314024, ne=471036) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 16 with euler number -1 (1 loops) computing statistics for defect 16: 102 vertices location: [ (178,102,77) - average intensity = 86.890 ] -gray ( 81.85 , 3.72 ) -white ( 93.20 , 3.66 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (81.847282 [log = -2.254004 ]- 93.196457 [log = -2.278612 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 183(183) - loop = 1 (1) - ntries = [28,83] BEST FITNESS (o)is -5.94062 mri =0.000 curv = 1.122 unmri = 1.451 ( f=0.00 , v=0.00 , c=1.12 , q= 2.24 ) ( f=0.00 , v=0.00 , c=1.12 , q= 2.24 ) BEST FITNESS (o)is -5.72328 mri =0.000 curv = 0.961 unmri = 1.880 ( f=0.00 , v=0.00 , c=0.96 , q= 1.92 ) ( f=0.00 , v=0.00 , c=0.96 , q= 1.92 ) 56 patches have been generated - 28 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -5.72328 # generated patches : 56 (28 self-intersecting) AFTER CORRECTION, EULER IS -272 Surface Diagnostics: eno=-272 (nv=156812, nf=314168, ne=471252) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 17 with euler number -1 (1 loops) computing statistics for defect 17: 40 vertices location: [ (133,91,80) - average intensity = 90.105 ] -gray ( 83.69 , 3.48 ) -white ( 95.06 , 3.57 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (83.693306 [log = -2.101935 ]- 95.056183 [log = -2.335151 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 70(70) - loop = 1 (1) - ntries = [12,38] BEST FITNESS (o)is -44.85968 mri =0.000 curv = 11.085 unmri = 0.520 ( f=0.00 , v=0.00 , c=11.08 , q= 22.17 ) ( f=0.00 , v=0.00 , c=11.08 , q= 22.17 ) BEST FITNESS (o)is -38.60546 mri =0.000 curv = 9.521 unmri = 0.522 ( f=0.00 , v=0.00 , c=9.52 , q= 19.04 ) ( f=0.00 , v=0.00 , c=9.52 , q= 19.04 ) BEST FITNESS (o)is -25.89262 mri =0.000 curv = 5.931 unmri = 2.170 ( f=0.00 , v=0.00 , c=5.93 , q= 11.86 ) ( f=0.00 , v=0.00 , c=5.93 , q= 11.86 ) BEST FITNESS (o)is -22.52012 mri =0.000 curv = 5.035 unmri = 2.378 ( f=0.00 , v=0.00 , c=5.04 , q= 10.07 ) ( f=0.00 , v=0.00 , c=5.04 , q= 10.07 ) BEST FITNESS (o)is -15.55026 mri =0.000 curv = 3.660 unmri = 0.909 ( f=0.00 , v=0.00 , c=3.66 , q= 7.32 ) ( f=0.00 , v=0.00 , c=3.66 , q= 7.32 ) BEST FITNESS (o)is -5.96832 mri =0.000 curv = 1.315 unmri = 0.707 ( f=0.00 , v=0.00 , c=1.32 , q= 2.63 ) ( f=0.00 , v=0.00 , c=1.32 , q= 2.63 ) 24 patches have been generated - 10 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -5.96832 # generated patches : 24 (10 self-intersecting) AFTER CORRECTION, EULER IS -270 Surface Diagnostics: eno=-270 (nv=156834, nf=314208, ne=471312) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 18 with euler number -3 (2 loops) computing statistics for defect 18: 196 vertices location: [ (182,106,82) - average intensity = 86.965 ] -gray ( 79.33 , 13.76 ) -white ( 91.64 , 15.66 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (79.328537 [log = -2.429239 ]- 91.638260 [log = -2.388102 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 345(345) - loop = 1 (2) - ntries = [53,148] BEST FITNESS (o)is -3.19254 mri =0.000 curv = 1.588 unmri = -3.159 ( f=0.00 , v=0.00 , c=1.59 , q= 3.18 ) ( f=0.00 , v=0.00 , c=1.59 , q= 3.18 ) BEST FITNESS (o)is 0.38083 mri =0.000 curv = 1.930 unmri = -8.100 ( f=0.00 , v=0.00 , c=1.93 , q= 3.86 ) ( f=0.00 , v=0.00 , c=1.93 , q= 3.86 ) BEST FITNESS (o)is 4.51362 mri =0.000 curv = 0.569 unmri = -6.790 ( f=0.00 , v=0.00 , c=0.57 , q= 1.14 ) ( f=0.00 , v=0.00 , c=0.57 , q= 1.14 ) BEST FITNESS (o)is 5.49357 mri =0.000 curv = 0.772 unmri = -8.583 ( f=0.00 , v=0.00 , c=0.77 , q= 1.54 ) ( f=0.00 , v=0.00 , c=0.77 , q= 1.54 ) BEST FITNESS (M) is 10.26015 mri =0.000 curv = 2.387 unmri = -19.807 ( f=0.00 , v=0.00 , c=2.39 , q= 4.77 ) ( f=0.00 , v=0.00 , c=2.39 , q= 4.77 ) 109 patches have been generated - 46 self-intersected max face = 345(425) - loop = 2 (2) - ntries = [53,148] BEST FITNESS (o)is 11.40249 mri =0.000 curv = 2.891 unmri = -22.966 ( f=0.00 , v=0.00 , c=2.89 , q= 5.78 ) ( f=0.00 , v=0.00 , c=2.89 , q= 5.78 ) BEST FITNESS (o)is 14.50128 mri =0.000 curv = 2.292 unmri = -23.670 ( f=0.00 , v=0.00 , c=2.29 , q= 4.58 ) ( f=0.00 , v=0.00 , c=2.29 , q= 4.58 ) BEST FITNESS (o)is 14.50925 mri =0.000 curv = 2.290 unmri = -23.671 ( f=0.00 , v=0.00 , c=2.29 , q= 4.58 ) ( f=0.00 , v=0.00 , c=2.29 , q= 4.58 ) 132 patches have been generated - 83 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : 14.50925 # generated patches : 241 (129 self-intersecting) AFTER CORRECTION, EULER IS -266 Surface Diagnostics: eno=-266 (nv=156898, nf=314328, ne=471492) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 19 with euler number -1 (1 loops) computing statistics for defect 19: 82 vertices location: [ (184,125,80) - average intensity = 88.671 ] -gray ( 82.59 , 3.60 ) -white ( 95.74 , 2.91 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (82.589035 [log = -2.284107 ]- 95.744446 [log = -2.007588 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 134(134) - loop = 1 (1) - ntries = [21,64] BEST FITNESS (o)is -6.74926 mri =0.000 curv = 1.383 unmri = 1.216 ( f=0.00 , v=0.00 , c=1.38 , q= 2.77 ) ( f=0.00 , v=0.00 , c=1.38 , q= 2.77 ) BEST FITNESS (o)is -6.30134 mri =0.000 curv = 1.270 unmri = 1.221 ( f=0.00 , v=0.00 , c=1.27 , q= 2.54 ) ( f=0.00 , v=0.00 , c=1.27 , q= 2.54 ) 42 patches have been generated - 12 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -6.30134 # generated patches : 42 (12 self-intersecting) AFTER CORRECTION, EULER IS -264 Surface Diagnostics: eno=-264 (nv=156920, nf=314368, ne=471552) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 20 with euler number -1 (1 loops) computing statistics for defect 20: 62 vertices location: [ (179,131,82) - average intensity = 90.205 ] -gray ( 82.65 , 9.12 ) -white ( 95.88 , 10.33 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (82.653694 [log = -2.209975 ]- 95.881599 [log = -2.053331 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 96(96) - loop = 1 (1) - ntries = [15,48] BEST FITNESS (o)is -2.25950 mri =0.000 curv = 0.141 unmri = 1.697 ( f=0.00 , v=0.00 , c=0.14 , q= 0.28 ) ( f=0.00 , v=0.00 , c=0.14 , q= 0.28 ) BEST FITNESS (o)is -2.17009 mri =0.000 curv = 0.181 unmri = 1.444 ( f=0.00 , v=0.00 , c=0.18 , q= 0.36 ) ( f=0.00 , v=0.00 , c=0.18 , q= 0.36 ) BEST FITNESS (o)is -2.11070 mri =0.000 curv = 0.166 unmri = 1.447 ( f=0.00 , v=0.00 , c=0.17 , q= 0.33 ) ( f=0.00 , v=0.00 , c=0.17 , q= 0.33 ) 30 patches have been generated - 3 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -2.11070 # generated patches : 30 (3 self-intersecting) AFTER CORRECTION, EULER IS -262 Surface Diagnostics: eno=-262 (nv=156942, nf=314408, ne=471612) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 21 with euler number -1 (1 loops) computing statistics for defect 21: 107 vertices location: [ (176,148,82) - average intensity = 85.270 ] -gray ( 79.98 , 3.05 ) -white ( 91.60 , 3.16 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (79.975868 [log = -2.042999 ]- 91.599686 [log = -2.034313 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 177(177) - loop = 1 (1) - ntries = [28,81] BEST FITNESS (o)is -12.79323 mri =0.000 curv = 0.377 unmri = 11.283 ( f=0.00 , v=0.00 , c=0.38 , q= 0.75 ) ( f=0.00 , v=0.00 , c=0.38 , q= 0.75 ) BEST FITNESS (M) is -1.82695 mri =0.000 curv = 1.677 unmri = -4.882 ( f=0.00 , v=0.00 , c=1.68 , q= 3.35 ) ( f=0.00 , v=0.00 , c=1.68 , q= 3.35 ) 56 patches have been generated - 10 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -1.82695 # generated patches : 56 (10 self-intersecting) AFTER CORRECTION, EULER IS -260 Surface Diagnostics: eno=-260 (nv=156980, nf=314480, ne=471720) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 22 with euler number 1 (0 loops) Nothing to correct for defect 22!! AFTER CORRECTION, EULER IS -260 Surface Diagnostics: eno=-260 (nv=156980, nf=314480, ne=471720) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 23 with euler number -1 (1 loops) computing statistics for defect 23: 91 vertices location: [ (136,94,86) - average intensity = 88.153 ] -gray ( 80.98 , 9.42 ) -white ( 93.77 , 10.36 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (80.983315 [log = -2.500041 ]- 93.771858 [log = -2.131640 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 144(144) - loop = 1 (1) - ntries = [23,68] BEST FITNESS (o)is 1.68338 mri =0.000 curv = 0.429 unmri = -3.399 ( f=0.00 , v=0.00 , c=0.43 , q= 0.86 ) ( f=0.00 , v=0.00 , c=0.43 , q= 0.86 ) 47 patches have been generated - 12 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : 1.68338 # generated patches : 47 (12 self-intersecting) AFTER CORRECTION, EULER IS -258 Surface Diagnostics: eno=-258 (nv=157010, nf=314536, ne=471804) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 24 with euler number -1 (1 loops) computing statistics for defect 24: 67 vertices location: [ (133,130,86) - average intensity = 86.451 ] -gray ( 80.83 , 4.14 ) -white ( 92.95 , 3.24 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (80.832825 [log = -2.419384 ]- 92.953697 [log = -2.041745 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 110(110) - loop = 1 (1) - ntries = [18,54] BEST FITNESS (o)is -1.74164 mri =0.000 curv = 0.284 unmri = 0.606 ( f=0.00 , v=0.00 , c=0.28 , q= 0.57 ) ( f=0.00 , v=0.00 , c=0.28 , q= 0.57 ) BEST FITNESS (o)is -1.73459 mri =0.000 curv = 0.281 unmri = 0.609 ( f=0.00 , v=0.00 , c=0.28 , q= 0.56 ) ( f=0.00 , v=0.00 , c=0.28 , q= 0.56 ) BEST FITNESS (o)is -1.73123 mri =0.000 curv = 0.282 unmri = 0.605 ( f=0.00 , v=0.00 , c=0.28 , q= 0.56 ) ( f=0.00 , v=0.00 , c=0.28 , q= 0.56 ) BEST FITNESS (o)is -1.72968 mri =0.000 curv = 0.281 unmri = 0.606 ( f=0.00 , v=0.00 , c=0.28 , q= 0.56 ) ( f=0.00 , v=0.00 , c=0.28 , q= 0.56 ) 36 patches have been generated - 7 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -1.72968 # generated patches : 36 (7 self-intersecting) AFTER CORRECTION, EULER IS -256 Surface Diagnostics: eno=-256 (nv=157032, nf=314576, ne=471864) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 25 with euler number -1 (1 loops) computing statistics for defect 25: 82 vertices location: [ (183,109,89) - average intensity = 89.254 ] -gray ( 82.17 , 3.17 ) -white ( 94.55 , 3.20 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (82.166740 [log = -2.117854 ]- 94.551208 [log = -2.105881 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 137(137) - loop = 1 (1) - ntries = [22,65] BEST FITNESS (o)is -9.83689 mri =0.000 curv = 2.101 unmri = 1.431 ( f=0.00 , v=0.00 , c=2.10 , q= 4.20 ) ( f=0.00 , v=0.00 , c=2.10 , q= 4.20 ) BEST FITNESS (M) is -7.42160 mri =0.000 curv = 2.360 unmri = -2.017 ( f=0.00 , v=0.00 , c=2.36 , q= 4.72 ) ( f=0.00 , v=0.00 , c=2.36 , q= 4.72 ) BEST FITNESS (M) is -6.31677 mri =0.000 curv = 2.090 unmri = -2.044 ( f=0.00 , v=0.00 , c=2.09 , q= 4.18 ) ( f=0.00 , v=0.00 , c=2.09 , q= 4.18 ) BEST FITNESS (o)is -5.37902 mri =0.000 curv = 0.244 unmri = 4.401 ( f=0.00 , v=0.00 , c=0.24 , q= 0.49 ) ( f=0.00 , v=0.00 , c=0.24 , q= 0.49 ) BEST FITNESS (o)is -5.37516 mri =0.000 curv = 0.246 unmri = 4.390 ( f=0.00 , v=0.00 , c=0.25 , q= 0.49 ) ( f=0.00 , v=0.00 , c=0.25 , q= 0.49 ) 44 patches have been generated - 15 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -5.37516 # generated patches : 44 (15 self-intersecting) AFTER CORRECTION, EULER IS -254 Surface Diagnostics: eno=-254 (nv=157070, nf=314648, ne=471972) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 26 with euler number -19 (10 loops) computing statistics for defect 26: 2504 vertices location: [ (142,131,110) - average intensity = 61.370 ] -gray ( 72.35 , 14.97 ) -white ( 83.10 , 17.52 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (72.346886 [log = -3.953319 ]- 83.102821 [log = -4.086608 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 4801(4801) - loop = 1 (10) - ntries = [200,1930] BEST FITNESS (o)is -22.68209 mri =0.000 curv = 5.477 unmri = 0.776 ( f=0.00 , v=0.00 , c=5.48 , q= 10.95 ) ( f=0.00 , v=0.00 , c=5.48 , q= 10.95 ) BEST FITNESS (o)is 63.12981 mri =0.000 curv = 5.161 unmri = -83.772 ( f=0.00 , v=0.00 , c=5.16 , q= 10.32 ) ( f=0.00 , v=0.00 , c=5.16 , q= 10.32 ) BEST FITNESS (M) is 126.60995 mri =0.000 curv = 5.260 unmri = -147.649 ( f=0.00 , v=0.00 , c=5.26 , q= 10.52 ) ( f=0.00 , v=0.00 , c=5.26 , q= 10.52 ) BEST FITNESS (M) is 221.18125 mri =0.000 curv = 5.311 unmri = -242.426 ( f=0.00 , v=0.00 , c=5.31 , q= 10.62 ) ( f=0.00 , v=0.00 , c=5.31 , q= 10.62 ) BEST FITNESS (o)is 249.19258 mri =0.000 curv = 5.234 unmri = -270.129 ( f=0.00 , v=0.00 , c=5.23 , q= 10.47 ) ( f=0.00 , v=0.00 , c=5.23 , q= 10.47 ) BEST FITNESS (o)is 249.25119 mri =0.000 curv = 5.234 unmri = -270.188 ( f=0.00 , v=0.00 , c=5.23 , q= 10.47 ) ( f=0.00 , v=0.00 , c=5.23 , q= 10.47 ) BEST FITNESS (o)is 411.65278 mri =0.000 curv = 5.239 unmri = -432.608 ( f=0.00 , v=0.00 , c=5.24 , q= 10.48 ) ( f=0.00 , v=0.00 , c=5.24 , q= 10.48 ) 458 patches have been generated - 258 self-intersected max face = 4801(4857) - loop = 2 (10) - ntries = [200,1930] BEST FITNESS (o)is 410.09438 mri =0.000 curv = 5.434 unmri = -431.832 ( f=0.00 , v=0.00 , c=5.43 , q= 10.87 ) ( f=0.00 , v=0.00 , c=5.43 , q= 10.87 ) BEST FITNESS (o)is 424.63556 mri =0.000 curv = 5.128 unmri = -445.146 ( f=0.00 , v=0.00 , c=5.13 , q= 10.26 ) ( f=0.00 , v=0.00 , c=5.13 , q= 10.26 ) BEST FITNESS (o)is 444.52915 mri =0.000 curv = 5.250 unmri = -465.530 ( f=0.00 , v=0.00 , c=5.25 , q= 10.50 ) ( f=0.00 , v=0.00 , c=5.25 , q= 10.50 ) BEST FITNESS (o)is 633.43051 mri =0.000 curv = 6.542 unmri = -659.599 ( f=0.00 , v=0.00 , c=6.54 , q= 13.08 ) ( f=0.00 , v=0.00 , c=6.54 , q= 13.08 ) BEST FITNESS (M) is 654.04085 mri =0.000 curv = 5.248 unmri = -675.034 ( f=0.00 , v=0.00 , c=5.25 , q= 10.50 ) ( f=0.00 , v=0.00 , c=5.25 , q= 10.50 ) 469 patches have been generated - 282 self-intersected max face = 4801(4949) - loop = 3 (10) - ntries = [200,1930] BEST FITNESS (o)is 652.30807 mri =0.000 curv = 5.487 unmri = -674.257 ( f=0.00 , v=0.00 , c=5.49 , q= 10.97 ) ( f=0.00 , v=0.00 , c=5.49 , q= 10.97 ) BEST FITNESS (o)is 674.33714 mri =0.000 curv = 4.986 unmri = -694.280 ( f=0.00 , v=0.00 , c=4.99 , q= 9.97 ) ( f=0.00 , v=0.00 , c=4.99 , q= 9.97 ) BEST FITNESS (o)is 730.26220 mri =0.000 curv = 5.566 unmri = -752.526 ( f=0.00 , v=0.00 , c=5.57 , q= 11.13 ) ( f=0.00 , v=0.00 , c=5.57 , q= 11.13 ) BEST FITNESS (o)is 828.00958 mri =0.000 curv = 9.601 unmri = -866.412 ( f=0.00 , v=0.00 , c=9.60 , q= 19.20 ) ( f=0.00 , v=0.00 , c=9.60 , q= 19.20 ) 473 patches have been generated - 295 self-intersected max face = 4801(5021) - loop = 4 (10) - ntries = [200,1930] BEST FITNESS (o)is 826.64932 mri =0.000 curv = 9.747 unmri = -865.636 ( f=0.00 , v=0.00 , c=9.75 , q= 19.49 ) ( f=0.00 , v=0.00 , c=9.75 , q= 19.49 ) BEST FITNESS (o)is 842.70539 mri =0.000 curv = 9.504 unmri = -880.722 ( f=0.00 , v=0.00 , c=9.50 , q= 19.01 ) ( f=0.00 , v=0.00 , c=9.50 , q= 19.01 ) BEST FITNESS (o)is 859.58319 mri =0.000 curv = 9.065 unmri = -895.845 ( f=0.00 , v=0.00 , c=9.07 , q= 18.13 ) ( f=0.00 , v=0.00 , c=9.07 , q= 18.13 ) 482 patches have been generated - 305 self-intersected max face = 4801(5317) - loop = 5 (10) - ntries = [200,1930] BEST FITNESS (o)is 858.23883 mri =0.000 curv = 9.207 unmri = -895.069 ( f=0.00 , v=0.00 , c=9.21 , q= 18.41 ) ( f=0.00 , v=0.00 , c=9.21 , q= 18.41 ) BEST FITNESS (o)is 866.05571 mri =0.000 curv = 8.975 unmri = -901.954 ( f=0.00 , v=0.00 , c=8.97 , q= 17.95 ) ( f=0.00 , v=0.00 , c=8.97 , q= 17.95 ) BEST FITNESS (o)is 866.08946 mri =0.000 curv = 8.975 unmri = -901.988 ( f=0.00 , v=0.00 , c=8.97 , q= 17.95 ) ( f=0.00 , v=0.00 , c=8.97 , q= 17.95 ) BEST FITNESS (o)is 903.27272 mri =0.000 curv = 10.692 unmri = -946.043 ( f=0.00 , v=0.00 , c=10.69 , q= 21.38 ) ( f=0.00 , v=0.00 , c=10.69 , q= 21.38 ) 477 patches have been generated - 306 self-intersected max face = 4801(5381) - loop = 6 (10) - ntries = [200,1930] BEST FITNESS (o)is 898.55091 mri =0.000 curv = 10.873 unmri = -942.043 ( f=0.00 , v=0.00 , c=10.87 , q= 21.75 ) ( f=0.00 , v=0.00 , c=10.87 , q= 21.75 ) BEST FITNESS (o)is 899.24613 mri =0.000 curv = 11.072 unmri = -943.532 ( f=0.00 , v=0.00 , c=11.07 , q= 22.14 ) ( f=0.00 , v=0.00 , c=11.07 , q= 22.14 ) BEST FITNESS (o)is 901.75835 mri =0.000 curv = 10.885 unmri = -945.298 ( f=0.00 , v=0.00 , c=10.88 , q= 21.77 ) ( f=0.00 , v=0.00 , c=10.88 , q= 21.77 ) BEST FITNESS (o)is 902.92865 mri =0.000 curv = 11.942 unmri = -950.697 ( f=0.00 , v=0.00 , c=11.94 , q= 23.88 ) ( f=0.00 , v=0.00 , c=11.94 , q= 23.88 ) BEST FITNESS (o)is 904.49875 mri =0.000 curv = 10.322 unmri = -945.788 ( f=0.00 , v=0.00 , c=10.32 , q= 20.64 ) ( f=0.00 , v=0.00 , c=10.32 , q= 20.64 ) BEST FITNESS (o)is 909.80093 mri =0.000 curv = 10.588 unmri = -952.152 ( f=0.00 , v=0.00 , c=10.59 , q= 21.18 ) ( f=0.00 , v=0.00 , c=10.59 , q= 21.18 ) BEST FITNESS (o)is 909.83469 mri =0.000 curv = 10.588 unmri = -952.186 ( f=0.00 , v=0.00 , c=10.59 , q= 21.18 ) ( f=0.00 , v=0.00 , c=10.59 , q= 21.18 ) 484 patches have been generated - 320 self-intersected max face = 4801(5425) - loop = 7 (10) - ntries = [200,1930] BEST FITNESS (o)is 897.43477 mri =0.000 curv = 11.267 unmri = -942.505 ( f=0.00 , v=0.00 , c=11.27 , q= 22.53 ) ( f=0.00 , v=0.00 , c=11.27 , q= 22.53 ) BEST FITNESS (o)is 899.01980 mri =0.000 curv = 10.240 unmri = -939.980 ( f=0.00 , v=0.00 , c=10.24 , q= 20.48 ) ( f=0.00 , v=0.00 , c=10.24 , q= 20.48 ) BEST FITNESS (o)is 908.32129 mri =0.000 curv = 10.780 unmri = -951.441 ( f=0.00 , v=0.00 , c=10.78 , q= 21.56 ) ( f=0.00 , v=0.00 , c=10.78 , q= 21.56 ) BEST FITNESS (o)is 917.93974 mri =0.000 curv = 10.132 unmri = -958.467 ( f=0.00 , v=0.00 , c=10.13 , q= 20.26 ) ( f=0.00 , v=0.00 , c=10.13 , q= 20.26 ) 489 patches have been generated - 326 self-intersected max face = 4801(5633) - loop = 8 (10) - ntries = [200,1930] BEST FITNESS (o)is 633.49259 mri =0.000 curv = 10.051 unmri = -673.699 ( f=0.00 , v=0.00 , c=10.05 , q= 20.10 ) ( f=0.00 , v=0.00 , c=10.05 , q= 20.10 ) BEST FITNESS (o)is 670.39356 mri =0.000 curv = 9.906 unmri = -710.016 ( f=0.00 , v=0.00 , c=9.91 , q= 19.81 ) ( f=0.00 , v=0.00 , c=9.91 , q= 19.81 ) BEST FITNESS (o)is 809.20056 mri =0.000 curv = 9.799 unmri = -848.398 ( f=0.00 , v=0.00 , c=9.80 , q= 19.60 ) ( f=0.00 , v=0.00 , c=9.80 , q= 19.60 ) BEST FITNESS (o)is 809.57715 mri =0.000 curv = 9.995 unmri = -849.558 ( f=0.00 , v=0.00 , c=10.00 , q= 19.99 ) ( f=0.00 , v=0.00 , c=10.00 , q= 19.99 ) BEST FITNESS (o)is 849.73507 mri =0.000 curv = 9.987 unmri = -889.684 ( f=0.00 , v=0.00 , c=9.99 , q= 19.97 ) ( f=0.00 , v=0.00 , c=9.99 , q= 19.97 ) BEST FITNESS (o)is 871.04442 mri =0.000 curv = 9.703 unmri = -909.858 ( f=0.00 , v=0.00 , c=9.70 , q= 19.41 ) ( f=0.00 , v=0.00 , c=9.70 , q= 19.41 ) BEST FITNESS (o)is 897.87513 mri =0.000 curv = 12.924 unmri = -949.571 ( f=0.00 , v=0.00 , c=12.92 , q= 25.85 ) ( f=0.00 , v=0.00 , c=12.92 , q= 25.85 ) BEST FITNESS (o)is 901.23411 mri =0.000 curv = 9.717 unmri = -940.101 ( f=0.00 , v=0.00 , c=9.72 , q= 19.43 ) ( f=0.00 , v=0.00 , c=9.72 , q= 19.43 ) 489 patches have been generated - 327 self-intersected max face = 4801(5865) - loop = 9 (10) - ntries = [200,1930] BEST FITNESS (o)is 616.75145 mri =0.000 curv = 9.645 unmri = -655.332 ( f=0.00 , v=0.00 , c=9.65 , q= 19.29 ) ( f=0.00 , v=0.00 , c=9.65 , q= 19.29 ) BEST FITNESS (o)is 646.43819 mri =0.000 curv = 9.501 unmri = -684.441 ( f=0.00 , v=0.00 , c=9.50 , q= 19.00 ) ( f=0.00 , v=0.00 , c=9.50 , q= 19.00 ) BEST FITNESS (o)is 724.02573 mri =0.000 curv = 21.608 unmri = -810.460 ( f=0.00 , v=0.00 , c=21.61 , q= 43.22 ) ( f=0.00 , v=0.00 , c=21.61 , q= 43.22 ) BEST FITNESS (o)is 794.68270 mri =0.000 curv = 10.276 unmri = -835.786 ( f=0.00 , v=0.00 , c=10.28 , q= 20.55 ) ( f=0.00 , v=0.00 , c=10.28 , q= 20.55 ) 499 patches have been generated - 346 self-intersected max face = 4801(6073) - loop = 10 (10) - ntries = [200,1930] BEST FITNESS (o)is 510.21859 mri =0.000 curv = 10.200 unmri = -551.018 ( f=0.00 , v=0.00 , c=10.20 , q= 20.40 ) ( f=0.00 , v=0.00 , c=10.20 , q= 20.40 ) BEST FITNESS (o)is 519.54894 mri =0.000 curv = 10.216 unmri = -560.414 ( f=0.00 , v=0.00 , c=10.22 , q= 20.43 ) ( f=0.00 , v=0.00 , c=10.22 , q= 20.43 ) BEST FITNESS (o)is 525.97531 mri =0.000 curv = 10.090 unmri = -566.334 ( f=0.00 , v=0.00 , c=10.09 , q= 20.18 ) ( f=0.00 , v=0.00 , c=10.09 , q= 20.18 ) BEST FITNESS (o)is 618.81313 mri =0.000 curv = 10.152 unmri = -659.421 ( f=0.00 , v=0.00 , c=10.15 , q= 20.30 ) ( f=0.00 , v=0.00 , c=10.15 , q= 20.30 ) BEST FITNESS (o)is 637.50071 mri =0.000 curv = 10.134 unmri = -678.037 ( f=0.00 , v=0.00 , c=10.13 , q= 20.27 ) ( f=0.00 , v=0.00 , c=10.13 , q= 20.27 ) 538 patches have been generated - 429 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : 637.50073 # generated patches : 4858 (3194 self-intersecting) AFTER CORRECTION, EULER IS -234 Surface Diagnostics: eno=-234 (nv=157830, nf=316128, ne=474192) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 27 with euler number -3 (2 loops) computing statistics for defect 27: 135 vertices location: [ (147,151,92) - average intensity = 86.743 ] -gray ( 81.56 , 3.07 ) -white ( 93.00 , 2.99 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (81.561592 [log = -2.041016 ]- 93.001610 [log = -1.996679 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 243(243) - loop = 1 (2) - ntries = [37,107] BEST FITNESS (o)is -9.52333 mri =0.000 curv = 2.448 unmri = -0.268 ( f=0.00 , v=0.00 , c=2.45 , q= 4.90 ) ( f=0.00 , v=0.00 , c=2.45 , q= 4.90 ) BEST FITNESS (o)is -9.00191 mri =0.000 curv = 0.872 unmri = 5.515 ( f=0.00 , v=0.00 , c=0.87 , q= 1.74 ) ( f=0.00 , v=0.00 , c=0.87 , q= 1.74 ) BEST FITNESS (o)is -4.10089 mri =0.000 curv = 1.211 unmri = -0.741 ( f=0.00 , v=0.00 , c=1.21 , q= 2.42 ) ( f=0.00 , v=0.00 , c=1.21 , q= 2.42 ) BEST FITNESS (o)is -3.08890 mri =0.000 curv = 1.296 unmri = -2.093 ( f=0.00 , v=0.00 , c=1.30 , q= 2.59 ) ( f=0.00 , v=0.00 , c=1.30 , q= 2.59 ) BEST FITNESS (o)is -2.03678 mri =0.000 curv = 1.511 unmri = -4.008 ( f=0.00 , v=0.00 , c=1.51 , q= 3.02 ) ( f=0.00 , v=0.00 , c=1.51 , q= 3.02 ) BEST FITNESS (o)is -1.82134 mri =0.000 curv = 1.628 unmri = -4.692 ( f=0.00 , v=0.00 , c=1.63 , q= 3.26 ) ( f=0.00 , v=0.00 , c=1.63 , q= 3.26 ) 75 patches have been generated - 38 self-intersected max face = 243(315) - loop = 2 (2) - ntries = [37,107] BEST FITNESS (o)is -5.45408 mri =0.000 curv = 2.603 unmri = -4.956 ( f=0.00 , v=0.00 , c=2.60 , q= 5.21 ) ( f=0.00 , v=0.00 , c=2.60 , q= 5.21 ) BEST FITNESS (o)is -4.26192 mri =0.000 curv = 2.478 unmri = -5.651 ( f=0.00 , v=0.00 , c=2.48 , q= 4.96 ) ( f=0.00 , v=0.00 , c=2.48 , q= 4.96 ) BEST FITNESS (o)is -2.85377 mri =0.000 curv = 2.085 unmri = -5.486 ( f=0.00 , v=0.00 , c=2.08 , q= 4.17 ) ( f=0.00 , v=0.00 , c=2.08 , q= 4.17 ) BEST FITNESS (o)is -2.85377 mri =0.000 curv = 2.085 unmri = -5.486 ( f=0.00 , v=0.00 , c=2.08 , q= 4.17 ) ( f=0.00 , v=0.00 , c=2.08 , q= 4.17 ) 75 patches have been generated - 38 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -2.85377 # generated patches : 150 (76 self-intersecting) AFTER CORRECTION, EULER IS -230 Surface Diagnostics: eno=-230 (nv=157898, nf=316256, ne=474384) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 28 with euler number -1 (1 loops) computing statistics for defect 28: 123 vertices location: [ (155,154,92) - average intensity = 85.055 ] -gray ( 79.95 , 3.53 ) -white ( 90.91 , 4.36 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (79.953064 [log = -2.179819 ]- 90.910683 [log = -2.321452 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 209(209) - loop = 1 (1) - ntries = [32,94] BEST FITNESS (o)is -2.62648 mri =0.000 curv = 0.397 unmri = 1.038 ( f=0.00 , v=0.00 , c=0.40 , q= 0.79 ) ( f=0.00 , v=0.00 , c=0.40 , q= 0.79 ) BEST FITNESS (M) is 4.22293 mri =0.000 curv = 1.085 unmri = -8.563 ( f=0.00 , v=0.00 , c=1.09 , q= 2.17 ) ( f=0.00 , v=0.00 , c=1.09 , q= 2.17 ) BEST FITNESS (M) is 5.01028 mri =0.000 curv = 1.072 unmri = -9.298 ( f=0.00 , v=0.00 , c=1.07 , q= 2.14 ) ( f=0.00 , v=0.00 , c=1.07 , q= 2.14 ) 64 patches have been generated - 19 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : 5.01028 # generated patches : 64 (19 self-intersecting) AFTER CORRECTION, EULER IS -228 Surface Diagnostics: eno=-228 (nv=157932, nf=316320, ne=474480) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 29 with euler number -1 (1 loops) computing statistics for defect 29: 44 vertices location: [ (153,93,92) - average intensity = 86.177 ] -gray ( 80.73 , 5.31 ) -white ( 92.59 , 3.77 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (80.733124 [log = -2.441790 ]- 92.589462 [log = -2.215855 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 70(70) - loop = 1 (1) - ntries = [12,38] BEST FITNESS (o)is -1.66987 mri =0.000 curv = 0.212 unmri = 0.822 ( f=0.00 , v=0.00 , c=0.21 , q= 0.42 ) ( f=0.00 , v=0.00 , c=0.21 , q= 0.42 ) 24 patches have been generated - 5 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -1.66987 # generated patches : 24 (5 self-intersecting) AFTER CORRECTION, EULER IS -226 Surface Diagnostics: eno=-226 (nv=157954, nf=316360, ne=474540) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 30 with euler number -1 (1 loops) computing statistics for defect 30: 73 vertices location: [ (136,110,93) - average intensity = 85.158 ] -gray ( 80.73 , 3.69 ) -white ( 91.96 , 2.91 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (80.731819 [log = -2.263646 ]- 91.960213 [log = -2.042672 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 117(117) - loop = 1 (1) - ntries = [19,57] BEST FITNESS (o)is -1.82915 mri =0.000 curv = 0.500 unmri = -0.170 ( f=0.00 , v=0.00 , c=0.50 , q= 1.00 ) ( f=0.00 , v=0.00 , c=0.50 , q= 1.00 ) BEST FITNESS (M) is 0.43021 mri =0.000 curv = 1.674 unmri = -7.127 ( f=0.00 , v=0.00 , c=1.67 , q= 3.35 ) ( f=0.00 , v=0.00 , c=1.67 , q= 3.35 ) 38 patches have been generated - 12 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : 0.43021 # generated patches : 38 (12 self-intersecting) AFTER CORRECTION, EULER IS -224 Surface Diagnostics: eno=-224 (nv=157976, nf=316400, ne=474600) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 31 with euler number 1 (0 loops) Nothing to correct for defect 31!! AFTER CORRECTION, EULER IS -224 Surface Diagnostics: eno=-224 (nv=157976, nf=316400, ne=474600) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 32 with euler number 1 (0 loops) Nothing to correct for defect 32!! AFTER CORRECTION, EULER IS -224 Surface Diagnostics: eno=-224 (nv=157976, nf=316400, ne=474600) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 33 with euler number -1 (1 loops) computing statistics for defect 33: 54 vertices location: [ (132,95,98) - average intensity = 88.836 ] -gray ( 84.33 , 3.72 ) -white ( 94.97 , 4.21 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (84.330383 [log = -2.222599 ]- 94.969849 [log = -2.409806 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 86(86) - loop = 1 (1) - ntries = [14,44] BEST FITNESS (o)is -4.77949 mri =0.000 curv = 0.946 unmri = 0.997 ( f=0.00 , v=0.00 , c=0.95 , q= 1.89 ) ( f=0.00 , v=0.00 , c=0.95 , q= 1.89 ) 28 patches have been generated - 11 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -4.77949 # generated patches : 28 (11 self-intersecting) AFTER CORRECTION, EULER IS -222 Surface Diagnostics: eno=-222 (nv=157998, nf=316440, ne=474660) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 34 with euler number -3 (2 loops) computing statistics for defect 34: 217 vertices location: [ (160,148,102) - average intensity = 80.988 ] -gray ( 74.17 , 7.98 ) -white ( 86.28 , 10.05 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (74.170700 [log = -2.812971 ]- 86.283348 [log = -3.622623 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 373(373) - loop = 1 (2) - ntries = [57,159] BEST FITNESS (o)is -1.10004 mri =0.000 curv = 0.752 unmri = -1.910 ( f=0.00 , v=0.00 , c=0.75 , q= 1.50 ) ( f=0.00 , v=0.00 , c=0.75 , q= 1.50 ) BEST FITNESS (M) is 1.82478 mri =0.000 curv = 4.060 unmri = -18.063 ( f=0.00 , v=0.00 , c=4.06 , q= 8.12 ) ( f=0.00 , v=0.00 , c=4.06 , q= 8.12 ) BEST FITNESS (M) is 10.57567 mri =0.000 curv = 1.843 unmri = -17.949 ( f=0.00 , v=0.00 , c=1.84 , q= 3.69 ) ( f=0.00 , v=0.00 , c=1.84 , q= 3.69 ) 114 patches have been generated - 43 self-intersected max face = 373(437) - loop = 2 (2) - ntries = [57,159] BEST FITNESS (o)is -1.25163 mri =0.000 curv = 2.422 unmri = -8.436 ( f=0.00 , v=0.00 , c=2.42 , q= 4.84 ) ( f=0.00 , v=0.00 , c=2.42 , q= 4.84 ) BEST FITNESS (o)is 6.52932 mri =0.000 curv = 2.641 unmri = -17.094 ( f=0.00 , v=0.00 , c=2.64 , q= 5.28 ) ( f=0.00 , v=0.00 , c=2.64 , q= 5.28 ) BEST FITNESS (o)is 7.06112 mri =0.000 curv = 3.766 unmri = -22.124 ( f=0.00 , v=0.00 , c=3.77 , q= 7.53 ) ( f=0.00 , v=0.00 , c=3.77 , q= 7.53 ) 122 patches have been generated - 44 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : 7.06112 # generated patches : 236 (87 self-intersecting) AFTER CORRECTION, EULER IS -218 Surface Diagnostics: eno=-218 (nv=158076, nf=316588, ne=474882) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 35 with euler number -1 (1 loops) computing statistics for defect 35: 58 vertices location: [ (178,162,101) - average intensity = 87.437 ] -gray ( 80.52 , 2.99 ) -white ( 91.96 , 2.65 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (80.523582 [log = -2.088796 ]- 91.961159 [log = -1.863117 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 100(100) - loop = 1 (1) - ntries = [16,50] BEST FITNESS (o)is -48.73612 mri =0.000 curv = 11.240 unmri = 3.776 ( f=0.00 , v=0.00 , c=11.24 , q= 22.48 ) ( f=0.00 , v=0.00 , c=11.24 , q= 22.48 ) BEST FITNESS (o)is -3.60594 mri =0.000 curv = 1.848 unmri = -3.788 ( f=0.00 , v=0.00 , c=1.85 , q= 3.70 ) ( f=0.00 , v=0.00 , c=1.85 , q= 3.70 ) BEST FITNESS (M) is -2.00400 mri =0.000 curv = 1.632 unmri = -4.526 ( f=0.00 , v=0.00 , c=1.63 , q= 3.26 ) ( f=0.00 , v=0.00 , c=1.63 , q= 3.26 ) 32 patches have been generated - 11 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -2.00400 # generated patches : 32 (11 self-intersecting) AFTER CORRECTION, EULER IS -216 Surface Diagnostics: eno=-216 (nv=158106, nf=316644, ne=474966) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 36 with euler number -1 (1 loops) computing statistics for defect 36: 43 vertices location: [ (136,122,102) - average intensity = 88.227 ] -gray ( 84.16 , 3.91 ) -white ( 95.45 , 3.42 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (84.163574 [log = -2.074118 ]- 95.445671 [log = -2.025256 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 68(68) - loop = 1 (1) - ntries = [11,37] BEST FITNESS (o)is -2.07036 mri =0.000 curv = 0.615 unmri = -0.389 ( f=0.00 , v=0.00 , c=0.61 , q= 1.23 ) ( f=0.00 , v=0.00 , c=0.61 , q= 1.23 ) BEST FITNESS (o)is -2.02054 mri =0.000 curv = 0.602 unmri = -0.389 ( f=0.00 , v=0.00 , c=0.60 , q= 1.20 ) ( f=0.00 , v=0.00 , c=0.60 , q= 1.20 ) 22 patches have been generated - 5 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -2.02054 # generated patches : 22 (5 self-intersecting) AFTER CORRECTION, EULER IS -214 Surface Diagnostics: eno=-214 (nv=158128, nf=316684, ne=475026) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 37 with euler number 1 (0 loops) Nothing to correct for defect 37!! AFTER CORRECTION, EULER IS -214 Surface Diagnostics: eno=-214 (nv=158128, nf=316684, ne=475026) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 38 with euler number 1 (0 loops) Nothing to correct for defect 38!! AFTER CORRECTION, EULER IS -214 Surface Diagnostics: eno=-214 (nv=158128, nf=316684, ne=475026) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 39 with euler number -3 (2 loops) computing statistics for defect 39: 321 vertices location: [ (159,164,109) - average intensity = 83.749 ] -gray ( 77.91 , 3.99 ) -white ( 89.11 , 4.48 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (77.909904 [log = -2.319229 ]- 89.105888 [log = -2.376381 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 587(587) - loop = 1 (2) - ntries = [89,245] BEST FITNESS (o)is -3.27067 mri =0.000 curv = 0.989 unmri = -0.685 ( f=0.00 , v=0.00 , c=0.99 , q= 1.98 ) ( f=0.00 , v=0.00 , c=0.99 , q= 1.98 ) BEST FITNESS (M) is 3.24940 mri =0.000 curv = 1.289 unmri = -8.404 ( f=0.00 , v=0.00 , c=1.29 , q= 2.58 ) ( f=0.00 , v=0.00 , c=1.29 , q= 2.58 ) BEST FITNESS (M) is 4.51207 mri =0.000 curv = 1.477 unmri = -10.418 ( f=0.00 , v=0.00 , c=1.48 , q= 2.95 ) ( f=0.00 , v=0.00 , c=1.48 , q= 2.95 ) BEST FITNESS (M) is 12.30746 mri =0.000 curv = 1.082 unmri = -16.635 ( f=0.00 , v=0.00 , c=1.08 , q= 2.16 ) ( f=0.00 , v=0.00 , c=1.08 , q= 2.16 ) 187 patches have been generated - 55 self-intersected max face = 587(659) - loop = 2 (2) - ntries = [89,245] BEST FITNESS (o)is 13.34410 mri =0.000 curv = 0.979 unmri = -17.259 ( f=0.00 , v=0.00 , c=0.98 , q= 1.96 ) ( f=0.00 , v=0.00 , c=0.98 , q= 1.96 ) BEST FITNESS (M) is 18.57989 mri =0.000 curv = 1.179 unmri = -23.297 ( f=0.00 , v=0.00 , c=1.18 , q= 2.36 ) ( f=0.00 , v=0.00 , c=1.18 , q= 2.36 ) BEST FITNESS (M) is 19.27524 mri =0.000 curv = 1.510 unmri = -25.316 ( f=0.00 , v=0.00 , c=1.51 , q= 3.02 ) ( f=0.00 , v=0.00 , c=1.51 , q= 3.02 ) BEST FITNESS (M) is 19.56964 mri =0.000 curv = 1.455 unmri = -25.389 ( f=0.00 , v=0.00 , c=1.45 , q= 2.91 ) ( f=0.00 , v=0.00 , c=1.45 , q= 2.91 ) 200 patches have been generated - 70 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : 19.56964 # generated patches : 387 (125 self-intersecting) AFTER CORRECTION, EULER IS -210 Surface Diagnostics: eno=-210 (nv=158208, nf=316836, ne=475254) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 40 with euler number -1 (1 loops) computing statistics for defect 40: 55 vertices location: [ (170,164,107) - average intensity = 87.192 ] -gray ( 79.90 , 2.83 ) -white ( 92.45 , 2.92 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (79.896683 [log = -1.966051 ]- 92.446968 [log = -1.967758 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 91(91) - loop = 1 (1) - ntries = [15,46] BEST FITNESS (o)is 0.43404 mri =0.000 curv = 0.584 unmri = -2.770 ( f=0.00 , v=0.00 , c=0.58 , q= 1.17 ) ( f=0.00 , v=0.00 , c=0.58 , q= 1.17 ) BEST FITNESS (o)is 0.43746 mri =0.000 curv = 0.583 unmri = -2.769 ( f=0.00 , v=0.00 , c=0.58 , q= 1.17 ) ( f=0.00 , v=0.00 , c=0.58 , q= 1.17 ) 30 patches have been generated - 9 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : 0.43746 # generated patches : 30 (9 self-intersecting) AFTER CORRECTION, EULER IS -208 Surface Diagnostics: eno=-208 (nv=158230, nf=316876, ne=475314) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 41 with euler number -3 (2 loops) computing statistics for defect 41: 88 vertices location: [ (189,125,111) - average intensity = 87.180 ] -gray ( 82.25 , 2.92 ) -white ( 94.43 , 3.71 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (82.253975 [log = -2.037870 ]- 94.428719 [log = -2.125604 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 152(152) - loop = 1 (2) - ntries = [24,71] BEST FITNESS (o)is -4.64727 mri =0.000 curv = 0.667 unmri = 1.981 ( f=0.00 , v=0.00 , c=0.67 , q= 1.33 ) ( f=0.00 , v=0.00 , c=0.67 , q= 1.33 ) BEST FITNESS (o)is -4.42238 mri =0.000 curv = 0.441 unmri = 2.657 ( f=0.00 , v=0.00 , c=0.44 , q= 0.88 ) ( f=0.00 , v=0.00 , c=0.44 , q= 0.88 ) BEST FITNESS (o)is -4.28593 mri =0.000 curv = 0.436 unmri = 2.542 ( f=0.00 , v=0.00 , c=0.44 , q= 0.87 ) ( f=0.00 , v=0.00 , c=0.44 , q= 0.87 ) BEST FITNESS (o)is -1.75797 mri =0.000 curv = 1.012 unmri = -2.291 ( f=0.00 , v=0.00 , c=1.01 , q= 2.02 ) ( f=0.00 , v=0.00 , c=1.01 , q= 2.02 ) 48 patches have been generated - 15 self-intersected max face = 152(232) - loop = 2 (2) - ntries = [24,71] BEST FITNESS (o)is -3.34851 mri =0.000 curv = 0.914 unmri = -0.309 ( f=0.00 , v=0.00 , c=0.91 , q= 1.83 ) ( f=0.00 , v=0.00 , c=0.91 , q= 1.83 ) 48 patches have been generated - 24 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -3.34851 # generated patches : 96 (39 self-intersecting) AFTER CORRECTION, EULER IS -204 Surface Diagnostics: eno=-204 (nv=158294, nf=316996, ne=475494) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 42 with euler number 1 (0 loops) Nothing to correct for defect 42!! AFTER CORRECTION, EULER IS -204 Surface Diagnostics: eno=-204 (nv=158294, nf=316996, ne=475494) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 43 with euler number 1 (0 loops) Nothing to correct for defect 43!! AFTER CORRECTION, EULER IS -204 Surface Diagnostics: eno=-204 (nv=158294, nf=316996, ne=475494) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 44 with euler number -1 (1 loops) computing statistics for defect 44: 45 vertices location: [ (170,110,113) - average intensity = 85.802 ] -gray ( 79.59 , 5.09 ) -white ( 90.50 , 3.19 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (79.588211 [log = -2.242445 ]- 90.498032 [log = -2.047421 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 73(73) - loop = 1 (1) - ntries = [12,39] BEST FITNESS (o)is -1.25832 mri =0.000 curv = 0.721 unmri = -1.625 ( f=0.00 , v=0.00 , c=0.72 , q= 1.44 ) ( f=0.00 , v=0.00 , c=0.72 , q= 1.44 ) BEST FITNESS (o)is -1.23329 mri =0.000 curv = 0.715 unmri = -1.625 ( f=0.00 , v=0.00 , c=0.71 , q= 1.43 ) ( f=0.00 , v=0.00 , c=0.71 , q= 1.43 ) 24 patches have been generated - 7 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -1.23329 # generated patches : 24 (7 self-intersecting) AFTER CORRECTION, EULER IS -202 Surface Diagnostics: eno=-202 (nv=158316, nf=317036, ne=475554) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 45 with euler number -1 (1 loops) computing statistics for defect 45: 50 vertices location: [ (176,109,115) - average intensity = 85.910 ] -gray ( 80.74 , 11.44 ) -white ( 90.93 , 12.39 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (80.735016 [log = -2.233772 ]- 90.934570 [log = -2.163885 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 80(80) - loop = 1 (1) - ntries = [13,42] BEST FITNESS (o)is -38.73790 mri =0.000 curv = 9.795 unmri = -0.442 ( f=0.00 , v=0.00 , c=9.79 , q= 19.59 ) ( f=0.00 , v=0.00 , c=9.79 , q= 19.59 ) BEST FITNESS (o)is -5.99704 mri =0.000 curv = 1.127 unmri = 1.488 ( f=0.00 , v=0.00 , c=1.13 , q= 2.25 ) ( f=0.00 , v=0.00 , c=1.13 , q= 2.25 ) 26 patches have been generated - 7 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -5.99704 # generated patches : 26 (7 self-intersecting) AFTER CORRECTION, EULER IS -200 Surface Diagnostics: eno=-200 (nv=158354, nf=317108, ne=475662) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 46 with euler number -1 (1 loops) computing statistics for defect 46: 156 vertices location: [ (172,141,116) - average intensity = 90.025 ] -gray ( 81.51 , 3.86 ) -white ( 94.80 , 3.67 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (81.505371 [log = -2.250417 ]- 94.803642 [log = -2.245246 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 261(261) - loop = 1 (1) - ntries = [40,114] BEST FITNESS (o)is 2.14871 mri =0.000 curv = 0.243 unmri = -3.120 ( f=0.00 , v=0.00 , c=0.24 , q= 0.49 ) ( f=0.00 , v=0.00 , c=0.24 , q= 0.49 ) BEST FITNESS (M) is 8.29278 mri =0.000 curv = 0.926 unmri = -11.998 ( f=0.00 , v=0.00 , c=0.93 , q= 1.85 ) ( f=0.00 , v=0.00 , c=0.93 , q= 1.85 ) BEST FITNESS (M) is 9.55179 mri =0.000 curv = 1.250 unmri = -14.551 ( f=0.00 , v=0.00 , c=1.25 , q= 2.50 ) ( f=0.00 , v=0.00 , c=1.25 , q= 2.50 ) BEST FITNESS (M) is 10.06639 mri =0.000 curv = 0.977 unmri = -13.974 ( f=0.00 , v=0.00 , c=0.98 , q= 1.95 ) ( f=0.00 , v=0.00 , c=0.98 , q= 1.95 ) BEST FITNESS (M) is 10.66865 mri =0.000 curv = 0.821 unmri = -13.952 ( f=0.00 , v=0.00 , c=0.82 , q= 1.64 ) ( f=0.00 , v=0.00 , c=0.82 , q= 1.64 ) BEST FITNESS (M) is 10.68462 mri =0.000 curv = 0.984 unmri = -14.620 ( f=0.00 , v=0.00 , c=0.98 , q= 1.97 ) ( f=0.00 , v=0.00 , c=0.98 , q= 1.97 ) BEST FITNESS (M) is 10.77381 mri =0.000 curv = 0.794 unmri = -13.949 ( f=0.00 , v=0.00 , c=0.79 , q= 1.59 ) ( f=0.00 , v=0.00 , c=0.79 , q= 1.59 ) BEST FITNESS (M) is 11.03801 mri =0.000 curv = 0.722 unmri = -13.928 ( f=0.00 , v=0.00 , c=0.72 , q= 1.44 ) ( f=0.00 , v=0.00 , c=0.72 , q= 1.44 ) 81 patches have been generated - 13 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : 11.03801 # generated patches : 81 (13 self-intersecting) AFTER CORRECTION, EULER IS -198 Surface Diagnostics: eno=-198 (nv=158400, nf=317196, ne=475794) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 47 with euler number -5 (3 loops) computing statistics for defect 47: 399 vertices location: [ (154,155,116) - average intensity = 84.548 ] -gray ( 73.99 , 8.82 ) -white ( 86.98 , 8.37 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (73.991730 [log = -3.329855 ]- 86.977745 [log = -3.117210 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 699(699) - loop = 1 (3) - ntries = [106,290] BEST FITNESS (o)is 6.98766 mri =0.000 curv = 1.748 unmri = -13.980 ( f=0.00 , v=0.00 , c=1.75 , q= 3.50 ) ( f=0.00 , v=0.00 , c=1.75 , q= 3.50 ) BEST FITNESS (o)is 9.33229 mri =0.000 curv = 1.825 unmri = -16.632 ( f=0.00 , v=0.00 , c=1.83 , q= 3.65 ) ( f=0.00 , v=0.00 , c=1.83 , q= 3.65 ) BEST FITNESS (M) is 43.94017 mri =0.000 curv = 5.990 unmri = -67.899 ( f=0.00 , v=0.00 , c=5.99 , q= 11.98 ) ( f=0.00 , v=0.00 , c=5.99 , q= 11.98 ) BEST FITNESS (M) is 62.12707 mri =0.000 curv = 3.477 unmri = -76.034 ( f=0.00 , v=0.00 , c=3.48 , q= 6.95 ) ( f=0.00 , v=0.00 , c=3.48 , q= 6.95 ) BEST FITNESS (M) is 84.21435 mri =0.000 curv = 2.413 unmri = -93.868 ( f=0.00 , v=0.00 , c=2.41 , q= 4.83 ) ( f=0.00 , v=0.00 , c=2.41 , q= 4.83 ) BEST FITNESS (M) is 84.21435 mri =0.000 curv = 2.413 unmri = -93.868 ( f=0.00 , v=0.00 , c=2.41 , q= 4.83 ) ( f=0.00 , v=0.00 , c=2.41 , q= 4.83 ) 215 patches have been generated - 82 self-intersected max face = 699(743) - loop = 2 (3) - ntries = [106,290] BEST FITNESS (o)is 63.95690 mri =0.000 curv = 3.735 unmri = -78.898 ( f=0.00 , v=0.00 , c=3.74 , q= 7.47 ) ( f=0.00 , v=0.00 , c=3.74 , q= 7.47 ) BEST FITNESS (o)is 99.20030 mri =0.000 curv = 2.143 unmri = -107.772 ( f=0.00 , v=0.00 , c=2.14 , q= 4.29 ) ( f=0.00 , v=0.00 , c=2.14 , q= 4.29 ) BEST FITNESS (o)is 101.60655 mri =0.000 curv = 2.166 unmri = -110.271 ( f=0.00 , v=0.00 , c=2.17 , q= 4.33 ) ( f=0.00 , v=0.00 , c=2.17 , q= 4.33 ) BEST FITNESS (M) is 130.39876 mri =0.000 curv = 2.685 unmri = -141.139 ( f=0.00 , v=0.00 , c=2.69 , q= 5.37 ) ( f=0.00 , v=0.00 , c=2.69 , q= 5.37 ) BEST FITNESS (M) is 134.64919 mri =0.000 curv = 2.404 unmri = -144.267 ( f=0.00 , v=0.00 , c=2.40 , q= 4.81 ) ( f=0.00 , v=0.00 , c=2.40 , q= 4.81 ) BEST FITNESS (M) is 141.23164 mri =0.000 curv = 5.000 unmri = -161.231 ( f=0.00 , v=0.00 , c=5.00 , q= 10.00 ) ( f=0.00 , v=0.00 , c=5.00 , q= 10.00 ) BEST FITNESS (M) is 143.17924 mri =0.000 curv = 2.381 unmri = -152.705 ( f=0.00 , v=0.00 , c=2.38 , q= 4.76 ) ( f=0.00 , v=0.00 , c=2.38 , q= 4.76 ) 217 patches have been generated - 81 self-intersected max face = 699(819) - loop = 3 (3) - ntries = [106,290] BEST FITNESS (o)is 91.30161 mri =0.000 curv = 4.327 unmri = -108.609 ( f=0.00 , v=0.00 , c=4.33 , q= 8.65 ) ( f=0.00 , v=0.00 , c=4.33 , q= 8.65 ) BEST FITNESS (M) is 110.71134 mri =0.000 curv = 2.901 unmri = -122.317 ( f=0.00 , v=0.00 , c=2.90 , q= 5.80 ) ( f=0.00 , v=0.00 , c=2.90 , q= 5.80 ) BEST FITNESS (M) is 118.45969 mri =0.000 curv = 3.900 unmri = -134.061 ( f=0.00 , v=0.00 , c=3.90 , q= 7.80 ) ( f=0.00 , v=0.00 , c=3.90 , q= 7.80 ) BEST FITNESS (M) is 124.07521 mri =0.000 curv = 2.599 unmri = -134.472 ( f=0.00 , v=0.00 , c=2.60 , q= 5.20 ) ( f=0.00 , v=0.00 , c=2.60 , q= 5.20 ) 278 patches have been generated - 201 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : 124.07521 # generated patches : 710 (364 self-intersecting) AFTER CORRECTION, EULER IS -192 Surface Diagnostics: eno=-192 (nv=158532, nf=317448, ne=476172) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 48 with euler number 1 (0 loops) Nothing to correct for defect 48!! AFTER CORRECTION, EULER IS -192 Surface Diagnostics: eno=-192 (nv=158532, nf=317448, ne=476172) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 49 with euler number 1 (0 loops) Nothing to correct for defect 49!! AFTER CORRECTION, EULER IS -192 Surface Diagnostics: eno=-192 (nv=158532, nf=317448, ne=476172) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 50 with euler number -3 (2 loops) computing statistics for defect 50: 166 vertices location: [ (153,95,119) - average intensity = 86.072 ] -gray ( 80.73 , 4.16 ) -white ( 92.46 , 3.80 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (80.730675 [log = -2.396952 ]- 92.457893 [log = -2.291109 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 287(287) - loop = 1 (2) - ntries = [44,125] BEST FITNESS (o)is -12.46700 mri =0.000 curv = 1.293 unmri = 7.294 ( f=0.00 , v=0.00 , c=1.29 , q= 2.59 ) ( f=0.00 , v=0.00 , c=1.29 , q= 2.59 ) BEST FITNESS (o)is -8.09364 mri =0.000 curv = 2.159 unmri = -0.542 ( f=0.00 , v=0.00 , c=2.16 , q= 4.32 ) ( f=0.00 , v=0.00 , c=2.16 , q= 4.32 ) BEST FITNESS (M) is -3.19406 mri =0.000 curv = 2.997 unmri = -8.792 ( f=0.00 , v=0.00 , c=3.00 , q= 5.99 ) ( f=0.00 , v=0.00 , c=3.00 , q= 5.99 ) BEST FITNESS (M) is -0.43168 mri =0.000 curv = 2.403 unmri = -9.179 ( f=0.00 , v=0.00 , c=2.40 , q= 4.81 ) ( f=0.00 , v=0.00 , c=2.40 , q= 4.81 ) 90 patches have been generated - 33 self-intersected max face = 287(355) - loop = 2 (2) - ntries = [44,125] BEST FITNESS (o)is -51.11258 mri =0.000 curv = 7.780 unmri = 19.992 ( f=0.00 , v=0.00 , c=7.78 , q= 15.56 ) ( f=0.00 , v=0.00 , c=7.78 , q= 15.56 ) BEST FITNESS (o)is -10.01701 mri =0.000 curv = 1.917 unmri = 2.348 ( f=0.00 , v=0.00 , c=1.92 , q= 3.83 ) ( f=0.00 , v=0.00 , c=1.92 , q= 3.83 ) BEST FITNESS (M) is -7.04071 mri =0.000 curv = 2.768 unmri = -4.030 ( f=0.00 , v=0.00 , c=2.77 , q= 5.54 ) ( f=0.00 , v=0.00 , c=2.77 , q= 5.54 ) BEST FITNESS (M) is 0.36033 mri =0.000 curv = 3.689 unmri = -15.114 ( f=0.00 , v=0.00 , c=3.69 , q= 7.38 ) ( f=0.00 , v=0.00 , c=3.69 , q= 7.38 ) BEST FITNESS (M) is 5.81916 mri =0.000 curv = 2.367 unmri = -15.289 ( f=0.00 , v=0.00 , c=2.37 , q= 4.73 ) ( f=0.00 , v=0.00 , c=2.37 , q= 4.73 ) BEST FITNESS (M) is 6.92536 mri =0.000 curv = 2.071 unmri = -15.210 ( f=0.00 , v=0.00 , c=2.07 , q= 4.14 ) ( f=0.00 , v=0.00 , c=2.07 , q= 4.14 ) 88 patches have been generated - 24 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : 6.92536 # generated patches : 178 (57 self-intersecting) AFTER CORRECTION, EULER IS -188 Surface Diagnostics: eno=-188 (nv=158636, nf=317648, ne=476472) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 51 with euler number 1 (0 loops) Nothing to correct for defect 51!! AFTER CORRECTION, EULER IS -188 Surface Diagnostics: eno=-188 (nv=158636, nf=317648, ne=476472) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 52 with euler number -1 (1 loops) computing statistics for defect 52: 54 vertices location: [ (175,130,118) - average intensity = 88.464 ] -gray ( 81.14 , 3.13 ) -white ( 93.83 , 2.65 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (81.143806 [log = -2.090407 ]- 93.832863 [log = -1.937802 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 92(92) - loop = 1 (1) - ntries = [15,47] BEST FITNESS (o)is -550.24173 mri =0.000 curv = 137.217 unmri = 1.375 ( f=0.00 , v=0.00 , c=137.22 , q= 274.43 ) ( f=0.00 , v=0.00 , c=137.22 , q= 274.43 ) BEST FITNESS (o)is -243.62283 mri =0.000 curv = 60.633 unmri = 1.093 ( f=0.00 , v=0.00 , c=60.63 , q= 121.27 ) ( f=0.00 , v=0.00 , c=60.63 , q= 121.27 ) BEST FITNESS (o)is -7.85563 mri =0.000 curv = 1.277 unmri = 2.746 ( f=0.00 , v=0.00 , c=1.28 , q= 2.55 ) ( f=0.00 , v=0.00 , c=1.28 , q= 2.55 ) BEST FITNESS (o)is -7.84460 mri =0.000 curv = 1.276 unmri = 2.739 ( f=0.00 , v=0.00 , c=1.28 , q= 2.55 ) ( f=0.00 , v=0.00 , c=1.28 , q= 2.55 ) 30 patches have been generated - 6 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -7.84460 # generated patches : 30 (6 self-intersecting) AFTER CORRECTION, EULER IS -186 Surface Diagnostics: eno=-186 (nv=158662, nf=317696, ne=476544) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 53 with euler number 1 (0 loops) Nothing to correct for defect 53!! AFTER CORRECTION, EULER IS -186 Surface Diagnostics: eno=-186 (nv=158662, nf=317696, ne=476544) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 54 with euler number 1 (0 loops) Nothing to correct for defect 54!! AFTER CORRECTION, EULER IS -186 Surface Diagnostics: eno=-186 (nv=158662, nf=317696, ne=476544) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 55 with euler number 1 (0 loops) Nothing to correct for defect 55!! AFTER CORRECTION, EULER IS -186 Surface Diagnostics: eno=-186 (nv=158662, nf=317696, ne=476544) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 56 with euler number -1 (1 loops) computing statistics for defect 56: 137 vertices location: [ (163,169,122) - average intensity = 86.847 ] -gray ( 77.83 , 3.76 ) -white ( 89.38 , 4.31 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (77.825760 [log = -2.198506 ]- 89.380463 [log = -2.146518 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 247(247) - loop = 1 (1) - ntries = [38,109] BEST FITNESS (o)is -33.57758 mri =0.000 curv = 0.962 unmri = 29.731 ( f=0.00 , v=0.00 , c=0.96 , q= 1.92 ) ( f=0.00 , v=0.00 , c=0.96 , q= 1.92 ) BEST FITNESS (o)is 19.41789 mri =0.000 curv = 0.744 unmri = -22.393 ( f=0.00 , v=0.00 , c=0.74 , q= 1.49 ) ( f=0.00 , v=0.00 , c=0.74 , q= 1.49 ) BEST FITNESS (M) is 31.03453 mri =0.000 curv = 0.868 unmri = -34.508 ( f=0.00 , v=0.00 , c=0.87 , q= 1.74 ) ( f=0.00 , v=0.00 , c=0.87 , q= 1.74 ) 76 patches have been generated - 24 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : 31.03453 # generated patches : 76 (24 self-intersecting) AFTER CORRECTION, EULER IS -184 Surface Diagnostics: eno=-184 (nv=158708, nf=317784, ne=476676) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 57 with euler number 1 (0 loops) Nothing to correct for defect 57!! AFTER CORRECTION, EULER IS -184 Surface Diagnostics: eno=-184 (nv=158708, nf=317784, ne=476676) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 58 with euler number -1 (1 loops) computing statistics for defect 58: 63 vertices location: [ (182,173,123) - average intensity = 88.484 ] -gray ( 78.80 , 4.83 ) -white ( 95.10 , 4.81 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (78.795677 [log = -2.416375 ]- 95.103447 [log = -2.391264 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 105(105) - loop = 1 (1) - ntries = [17,52] BEST FITNESS (o)is -27.01510 mri =0.000 curv = 6.794 unmri = -0.161 ( f=0.00 , v=0.00 , c=6.79 , q= 13.59 ) ( f=0.00 , v=0.00 , c=6.79 , q= 13.59 ) BEST FITNESS (o)is -26.78471 mri =0.000 curv = 6.737 unmri = -0.162 ( f=0.00 , v=0.00 , c=6.74 , q= 13.47 ) ( f=0.00 , v=0.00 , c=6.74 , q= 13.47 ) BEST FITNESS (o)is -26.76214 mri =0.000 curv = 6.731 unmri = -0.161 ( f=0.00 , v=0.00 , c=6.73 , q= 13.46 ) ( f=0.00 , v=0.00 , c=6.73 , q= 13.46 ) BEST FITNESS (o)is -7.03433 mri =0.000 curv = 0.886 unmri = 3.491 ( f=0.00 , v=0.00 , c=0.89 , q= 1.77 ) ( f=0.00 , v=0.00 , c=0.89 , q= 1.77 ) BEST FITNESS (o)is -6.71646 mri =0.000 curv = 0.967 unmri = 2.850 ( f=0.00 , v=0.00 , c=0.97 , q= 1.93 ) ( f=0.00 , v=0.00 , c=0.97 , q= 1.93 ) 35 patches have been generated - 15 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -6.71646 # generated patches : 35 (15 self-intersecting) AFTER CORRECTION, EULER IS -182 Surface Diagnostics: eno=-182 (nv=158746, nf=317856, ne=476784) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 59 with euler number -1 (1 loops) computing statistics for defect 59: 64 vertices location: [ (184,120,124) - average intensity = 87.612 ] -gray ( 80.27 , 5.88 ) -white ( 94.43 , 2.99 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (80.270935 [log = -3.164995 ]- 94.425613 [log = -2.034710 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 101(101) - loop = 1 (1) - ntries = [16,50] BEST FITNESS (o)is -7.46539 mri =0.000 curv = 1.895 unmri = -0.113 ( f=0.00 , v=0.00 , c=1.89 , q= 3.79 ) ( f=0.00 , v=0.00 , c=1.89 , q= 3.79 ) BEST FITNESS (o)is -7.28462 mri =0.000 curv = 1.850 unmri = -0.114 ( f=0.00 , v=0.00 , c=1.85 , q= 3.70 ) ( f=0.00 , v=0.00 , c=1.85 , q= 3.70 ) 32 patches have been generated - 5 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -7.28462 # generated patches : 32 (5 self-intersecting) AFTER CORRECTION, EULER IS -180 Surface Diagnostics: eno=-180 (nv=158774, nf=317908, ne=476862) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 60 with euler number 1 (0 loops) Nothing to correct for defect 60!! AFTER CORRECTION, EULER IS -180 Surface Diagnostics: eno=-180 (nv=158774, nf=317908, ne=476862) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 61 with euler number -1 (1 loops) computing statistics for defect 61: 250 vertices location: [ (180,161,126) - average intensity = 87.931 ] -gray ( 80.76 , 3.97 ) -white ( 94.25 , 3.64 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (80.759415 [log = -2.384043 ]- 94.246529 [log = -2.196208 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 451(451) - loop = 1 (1) - ntries = [69,190] BEST FITNESS (o)is -46.08174 mri =0.000 curv = 1.192 unmri = 41.314 ( f=0.00 , v=0.00 , c=1.19 , q= 2.38 ) ( f=0.00 , v=0.00 , c=1.19 , q= 2.38 ) BEST FITNESS (M) is -32.84838 mri =0.000 curv = 4.318 unmri = 15.577 ( f=0.00 , v=0.00 , c=4.32 , q= 8.64 ) ( f=0.00 , v=0.00 , c=4.32 , q= 8.64 ) BEST FITNESS (M) is -12.47370 mri =0.000 curv = 1.597 unmri = 6.087 ( f=0.00 , v=0.00 , c=1.60 , q= 3.19 ) ( f=0.00 , v=0.00 , c=1.60 , q= 3.19 ) BEST FITNESS (M) is -8.43582 mri =0.000 curv = 0.861 unmri = 4.993 ( f=0.00 , v=0.00 , c=0.86 , q= 1.72 ) ( f=0.00 , v=0.00 , c=0.86 , q= 1.72 ) 145 patches have been generated - 49 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -8.43582 # generated patches : 145 (49 self-intersecting) AFTER CORRECTION, EULER IS -178 Surface Diagnostics: eno=-178 (nv=158836, nf=318028, ne=477042) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 62 with euler number -3 (2 loops) computing statistics for defect 62: 250 vertices location: [ (175,172,127) - average intensity = 87.373 ] -gray ( 77.52 , 12.04 ) -white ( 93.39 , 13.83 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (77.524384 [log = -2.485222 ]- 93.391953 [log = -2.191880 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 436(436) - loop = 1 (2) - ntries = [66,184] BEST FITNESS (o)is 5.42342 mri =0.000 curv = 0.248 unmri = -6.415 ( f=0.00 , v=0.00 , c=0.25 , q= 0.50 ) ( f=0.00 , v=0.00 , c=0.25 , q= 0.50 ) BEST FITNESS (M) is 11.46668 mri =0.000 curv = 0.766 unmri = -14.531 ( f=0.00 , v=0.00 , c=0.77 , q= 1.53 ) ( f=0.00 , v=0.00 , c=0.77 , q= 1.53 ) BEST FITNESS (M) is 19.92835 mri =0.000 curv = 0.731 unmri = -22.851 ( f=0.00 , v=0.00 , c=0.73 , q= 1.46 ) ( f=0.00 , v=0.00 , c=0.73 , q= 1.46 ) BEST FITNESS (M) is 20.28623 mri =0.000 curv = 0.784 unmri = -23.421 ( f=0.00 , v=0.00 , c=0.78 , q= 1.57 ) ( f=0.00 , v=0.00 , c=0.78 , q= 1.57 ) 136 patches have been generated - 40 self-intersected max face = 436(584) - loop = 2 (2) - ntries = [66,184] BEST FITNESS (o)is 25.18678 mri =0.000 curv = 0.720 unmri = -28.068 ( f=0.00 , v=0.00 , c=0.72 , q= 1.44 ) ( f=0.00 , v=0.00 , c=0.72 , q= 1.44 ) BEST FITNESS (M) is 26.47268 mri =0.000 curv = 1.114 unmri = -30.929 ( f=0.00 , v=0.00 , c=1.11 , q= 2.23 ) ( f=0.00 , v=0.00 , c=1.11 , q= 2.23 ) BEST FITNESS (M) is 26.53883 mri =0.000 curv = 1.193 unmri = -31.309 ( f=0.00 , v=0.00 , c=1.19 , q= 2.39 ) ( f=0.00 , v=0.00 , c=1.19 , q= 2.39 ) BEST FITNESS (M) is 26.63147 mri =0.000 curv = 1.084 unmri = -30.969 ( f=0.00 , v=0.00 , c=1.08 , q= 2.17 ) ( f=0.00 , v=0.00 , c=1.08 , q= 2.17 ) 151 patches have been generated - 60 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : 26.63147 # generated patches : 287 (100 self-intersecting) AFTER CORRECTION, EULER IS -174 Surface Diagnostics: eno=-174 (nv=158940, nf=318228, ne=477342) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 63 with euler number 1 (0 loops) Nothing to correct for defect 63!! AFTER CORRECTION, EULER IS -174 Surface Diagnostics: eno=-174 (nv=158940, nf=318228, ne=477342) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 64 with euler number -1 (1 loops) computing statistics for defect 64: 364 vertices location: [ (158,178,129) - average intensity = 85.809 ] -gray ( 79.21 , 3.42 ) -white ( 91.83 , 3.20 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (79.210861 [log = -2.187668 ]- 91.833687 [log = -2.129163 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 686(686) - loop = 1 (1) - ntries = [104,284] BEST FITNESS (o)is -11.25011 mri =0.000 curv = 3.682 unmri = -3.477 ( f=0.00 , v=0.00 , c=3.68 , q= 7.36 ) ( f=0.00 , v=0.00 , c=3.68 , q= 7.36 ) BEST FITNESS (M) is -7.98082 mri =0.000 curv = 3.860 unmri = -7.460 ( f=0.00 , v=0.00 , c=3.86 , q= 7.72 ) ( f=0.00 , v=0.00 , c=3.86 , q= 7.72 ) BEST FITNESS (M) is -7.21656 mri =0.000 curv = 3.782 unmri = -7.911 ( f=0.00 , v=0.00 , c=3.78 , q= 7.56 ) ( f=0.00 , v=0.00 , c=3.78 , q= 7.56 ) 223 patches have been generated - 55 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -7.21656 # generated patches : 223 (55 self-intersecting) AFTER CORRECTION, EULER IS -172 Surface Diagnostics: eno=-172 (nv=158976, nf=318296, ne=477444) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 65 with euler number -1 (1 loops) computing statistics for defect 65: 44 vertices location: [ (188,117,127) - average intensity = 88.785 ] -gray ( 83.23 , 3.72 ) -white ( 94.68 , 3.20 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (83.228546 [log = -2.120578 ]- 94.681229 [log = -2.134346 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 70(70) - loop = 1 (1) - ntries = [12,38] BEST FITNESS (o)is -135.77480 mri =0.000 curv = 33.686 unmri = 1.030 ( f=0.00 , v=0.00 , c=33.69 , q= 67.37 ) ( f=0.00 , v=0.00 , c=33.69 , q= 67.37 ) BEST FITNESS (o)is -8.39098 mri =0.000 curv = 1.609 unmri = 1.955 ( f=0.00 , v=0.00 , c=1.61 , q= 3.22 ) ( f=0.00 , v=0.00 , c=1.61 , q= 3.22 ) BEST FITNESS (o)is -7.18649 mri =0.000 curv = 1.309 unmri = 1.951 ( f=0.00 , v=0.00 , c=1.31 , q= 2.62 ) ( f=0.00 , v=0.00 , c=1.31 , q= 2.62 ) 24 patches have been generated - 12 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -7.18649 # generated patches : 24 (12 self-intersecting) AFTER CORRECTION, EULER IS -170 Surface Diagnostics: eno=-170 (nv=159010, nf=318360, ne=477540) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 66 with euler number -3 (2 loops) computing statistics for defect 66: 161 vertices location: [ (145,148,128) - average intensity = 83.255 ] -gray ( 77.13 , 8.56 ) -white ( 86.95 , 6.29 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (77.130333 [log = -3.030755 ]- 86.949913 [log = -2.989076 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 295(295) - loop = 1 (2) - ntries = [45,128] BEST FITNESS (o)is -27.11031 mri =0.000 curv = 5.830 unmri = 3.791 ( f=0.00 , v=0.00 , c=5.83 , q= 11.66 ) ( f=0.00 , v=0.00 , c=5.83 , q= 11.66 ) BEST FITNESS (o)is -23.31820 mri =0.000 curv = 4.994 unmri = 3.341 ( f=0.00 , v=0.00 , c=4.99 , q= 9.99 ) ( f=0.00 , v=0.00 , c=4.99 , q= 9.99 ) BEST FITNESS (M) is -19.43209 mri =0.000 curv = 5.865 unmri = -4.029 ( f=0.00 , v=0.00 , c=5.87 , q= 11.73 ) ( f=0.00 , v=0.00 , c=5.87 , q= 11.73 ) BEST FITNESS (o)is -7.00585 mri =0.000 curv = 6.410 unmri = -18.633 ( f=0.00 , v=0.00 , c=6.41 , q= 12.82 ) ( f=0.00 , v=0.00 , c=6.41 , q= 12.82 ) BEST FITNESS (o)is -2.52496 mri =0.000 curv = 3.728 unmri = -12.387 ( f=0.00 , v=0.00 , c=3.73 , q= 7.46 ) ( f=0.00 , v=0.00 , c=3.73 , q= 7.46 ) BEST FITNESS (o)is 2.65139 mri =0.000 curv = 7.806 unmri = -33.874 ( f=0.00 , v=0.00 , c=7.81 , q= 15.61 ) ( f=0.00 , v=0.00 , c=7.81 , q= 15.61 ) 96 patches have been generated - 47 self-intersected max face = 295(411) - loop = 2 (2) - ntries = [45,128] BEST FITNESS (o)is -4.17539 mri =0.000 curv = 6.994 unmri = -23.802 ( f=0.00 , v=0.00 , c=6.99 , q= 13.99 ) ( f=0.00 , v=0.00 , c=6.99 , q= 13.99 ) BEST FITNESS (M) is 5.46956 mri =0.000 curv = 7.854 unmri = -36.887 ( f=0.00 , v=0.00 , c=7.85 , q= 15.71 ) ( f=0.00 , v=0.00 , c=7.85 , q= 15.71 ) BEST FITNESS (o)is 8.44724 mri =0.000 curv = 6.535 unmri = -34.588 ( f=0.00 , v=0.00 , c=6.54 , q= 13.07 ) ( f=0.00 , v=0.00 , c=6.54 , q= 13.07 ) BEST FITNESS (o)is 12.18381 mri =0.000 curv = 5.738 unmri = -35.136 ( f=0.00 , v=0.00 , c=5.74 , q= 11.48 ) ( f=0.00 , v=0.00 , c=5.74 , q= 11.48 ) BEST FITNESS (o)is 15.17722 mri =0.000 curv = 8.000 unmri = -47.176 ( f=0.00 , v=0.00 , c=8.00 , q= 16.00 ) ( f=0.00 , v=0.00 , c=8.00 , q= 16.00 ) 95 patches have been generated - 43 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : 15.17722 # generated patches : 191 (90 self-intersecting) AFTER CORRECTION, EULER IS -166 Surface Diagnostics: eno=-166 (nv=159104, nf=318540, ne=477810) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 67 with euler number -1 (1 loops) computing statistics for defect 67: 341 vertices location: [ (176,146,132) - average intensity = 87.392 ] -gray ( 80.82 , 3.70 ) -white ( 92.89 , 3.20 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (80.823753 [log = -2.224257 ]- 92.889259 [log = -2.111515 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 589(589) - loop = 1 (1) - ntries = [89,246] BEST FITNESS (o)is -6.46265 mri =0.000 curv = 0.298 unmri = 5.271 ( f=0.00 , v=0.00 , c=0.30 , q= 0.60 ) ( f=0.00 , v=0.00 , c=0.30 , q= 0.60 ) BEST FITNESS (M) is 2.99885 mri =0.000 curv = 0.669 unmri = -5.676 ( f=0.00 , v=0.00 , c=0.67 , q= 1.34 ) ( f=0.00 , v=0.00 , c=0.67 , q= 1.34 ) BEST FITNESS (M) is 3.90532 mri =0.000 curv = 0.464 unmri = -5.760 ( f=0.00 , v=0.00 , c=0.46 , q= 0.93 ) ( f=0.00 , v=0.00 , c=0.46 , q= 0.93 ) BEST FITNESS (M) is 3.98895 mri =0.000 curv = 0.506 unmri = -6.012 ( f=0.00 , v=0.00 , c=0.51 , q= 1.01 ) ( f=0.00 , v=0.00 , c=0.51 , q= 1.01 ) BEST FITNESS (M) is 4.10886 mri =0.000 curv = 0.757 unmri = -7.138 ( f=0.00 , v=0.00 , c=0.76 , q= 1.51 ) ( f=0.00 , v=0.00 , c=0.76 , q= 1.51 ) BEST FITNESS (M) is 4.26506 mri =0.000 curv = 0.682 unmri = -6.991 ( f=0.00 , v=0.00 , c=0.68 , q= 1.36 ) ( f=0.00 , v=0.00 , c=0.68 , q= 1.36 ) 191 patches have been generated - 22 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : 4.26506 # generated patches : 191 (22 self-intersecting) AFTER CORRECTION, EULER IS -164 Surface Diagnostics: eno=-164 (nv=159138, nf=318604, ne=477906) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 68 with euler number -1 (1 loops) computing statistics for defect 68: 139 vertices location: [ (147,165,129) - average intensity = 86.116 ] -gray ( 77.82 , 5.36 ) -white ( 85.70 , 7.98 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (77.816116 [log = -2.723801 ]- 85.697716 [log = -3.362934 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 245(245) - loop = 1 (1) - ntries = [38,108] BEST FITNESS (o)is -6.18269 mri =0.000 curv = 4.609 unmri = -12.254 ( f=0.00 , v=0.00 , c=4.61 , q= 9.22 ) ( f=0.00 , v=0.00 , c=4.61 , q= 9.22 ) 76 patches have been generated - 26 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -6.18269 # generated patches : 76 (26 self-intersecting) AFTER CORRECTION, EULER IS -162 Surface Diagnostics: eno=-162 (nv=159162, nf=318648, ne=477972) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 69 with euler number -1 (1 loops) computing statistics for defect 69: 55 vertices location: [ (135,85,130) - average intensity = 87.842 ] -gray ( 83.39 , 3.24 ) -white ( 93.57 , 2.99 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (83.386971 [log = -2.169272 ]- 93.565063 [log = -2.062904 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 85(85) - loop = 1 (1) - ntries = [14,44] BEST FITNESS (o)is -6.79568 mri =0.000 curv = 1.607 unmri = 0.368 ( f=0.00 , v=0.00 , c=1.61 , q= 3.21 ) ( f=0.00 , v=0.00 , c=1.61 , q= 3.21 ) BEST FITNESS (o)is -3.32885 mri =0.000 curv = 0.956 unmri = -0.496 ( f=0.00 , v=0.00 , c=0.96 , q= 1.91 ) ( f=0.00 , v=0.00 , c=0.96 , q= 1.91 ) BEST FITNESS (o)is -0.84694 mri =0.000 curv = 0.778 unmri = -2.266 ( f=0.00 , v=0.00 , c=0.78 , q= 1.56 ) ( f=0.00 , v=0.00 , c=0.78 , q= 1.56 ) 28 patches have been generated - 5 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : -0.84694 # generated patches : 28 (5 self-intersecting) AFTER CORRECTION, EULER IS -160 Surface Diagnostics: eno=-160 (nv=159200, nf=318720, ne=478080) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 70 with euler number 1 (0 loops) Nothing to correct for defect 70!! AFTER CORRECTION, EULER IS -160 Surface Diagnostics: eno=-160 (nv=159200, nf=318720, ne=478080) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 71 with euler number -5 (3 loops) computing statistics for defect 71: 111 vertices location: [ (153,152,130) - average intensity = 85.609 ] -gray ( 81.38 , 7.23 ) -white ( 90.11 , 8.04 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (81.377998 [log = -2.501109 ]- 90.108353 [log = -2.541853 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 191(191) - loop = 1 (3) - ntries = [30,86] BEST FITNESS (o)is -11.89085 mri =0.000 curv = 3.107 unmri = -0.538 ( f=0.00 , v=0.00 , c=3.11 , q= 6.21 ) ( f=0.00 , v=0.00 , c=3.11 , q= 6.21 ) BEST FITNESS (o)is -11.10982 mri =0.000 curv = 2.347 unmri = 1.721 ( f=0.00 , v=0.00 , c=2.35 , q= 4.69 ) ( f=0.00 , v=0.00 , c=2.35 , q= 4.69 ) 61 patches have been generated - 30 self-intersected max face = 191(275) - loop = 2 (3) - ntries = [30,86] BEST FITNESS (o)is -21.32440 mri =0.000 curv = 1.894 unmri = 13.748 ( f=0.00 , v=0.00 , c=1.89 , q= 3.79 ) ( f=0.00 , v=0.00 , c=1.89 , q= 3.79 ) BEST FITNESS (M) is -9.54338 mri =0.000 curv = 4.722 unmri = -9.346 ( f=0.00 , v=0.00 , c=4.72 , q= 9.44 ) ( f=0.00 , v=0.00 , c=4.72 , q= 9.44 ) BEST FITNESS (o)is -8.17349 mri =0.000 curv = 2.090 unmri = -0.188 ( f=0.00 , v=0.00 , c=2.09 , q= 4.18 ) ( f=0.00 , v=0.00 , c=2.09 , q= 4.18 ) BEST FITNESS (o)is -4.88248 mri =0.000 curv = 3.722 unmri = -10.007 ( f=0.00 , v=0.00 , c=3.72 , q= 7.44 ) ( f=0.00 , v=0.00 , c=3.72 , q= 7.44 ) BEST FITNESS (o)is 0.25602 mri =0.000 curv = 2.515 unmri = -10.316 ( f=0.00 , v=0.00 , c=2.52 , q= 5.03 ) ( f=0.00 , v=0.00 , c=2.52 , q= 5.03 ) BEST FITNESS (o)is 2.03947 mri =0.000 curv = 2.043 unmri = -10.213 ( f=0.00 , v=0.00 , c=2.04 , q= 4.09 ) ( f=0.00 , v=0.00 , c=2.04 , q= 4.09 ) 64 patches have been generated - 33 self-intersected max face = 191(335) - loop = 3 (3) - ntries = [30,86] BEST FITNESS (o)is -5.03071 mri =0.000 curv = 1.777 unmri = -2.079 ( f=0.00 , v=0.00 , c=1.78 , q= 3.55 ) ( f=0.00 , v=0.00 , c=1.78 , q= 3.55 ) BEST FITNESS (o)is -4.72238 mri =0.000 curv = 4.898 unmri = -14.869 ( f=0.00 , v=0.00 , c=4.90 , q= 9.80 ) ( f=0.00 , v=0.00 , c=4.90 , q= 9.80 ) BEST FITNESS (o)is 3.51135 mri =0.000 curv = 2.597 unmri = -13.900 ( f=0.00 , v=0.00 , c=2.60 , q= 5.19 ) ( f=0.00 , v=0.00 , c=2.60 , q= 5.19 ) 65 patches have been generated - 33 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : 3.51135 # generated patches : 190 (96 self-intersecting) AFTER CORRECTION, EULER IS -154 Surface Diagnostics: eno=-154 (nv=159306, nf=318920, ne=478380) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 72 with euler number 1 (0 loops) Nothing to correct for defect 72!! AFTER CORRECTION, EULER IS -154 Surface Diagnostics: eno=-154 (nv=159306, nf=318920, ne=478380) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 73 with euler number 1 (0 loops) Nothing to correct for defect 73!! AFTER CORRECTION, EULER IS -154 Surface Diagnostics: eno=-154 (nv=159306, nf=318920, ne=478380) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 74 with euler number -3 (2 loops) computing statistics for defect 74: 149 vertices location: [ (130,142,134) - average intensity = 83.592 ] -gray ( 71.33 , 12.01 ) -white ( 79.65 , 15.07 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (71.328972 [log = -3.523459 ]- 79.649864 [log = -3.496193 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 259(259) - loop = 1 (2) - ntries = [40,114] BEST FITNESS (o)is -22.86800 mri =0.000 curv = 1.509 unmri = 16.833 ( f=0.00 , v=0.00 , c=1.51 , q= 3.02 ) ( f=0.00 , v=0.00 , c=1.51 , q= 3.02 ) BEST FITNESS (M) is -2.49718 mri =0.000 curv = 3.791 unmri = -12.667 ( f=0.00 , v=0.00 , c=3.79 , q= 7.58 ) ( f=0.00 , v=0.00 , c=3.79 , q= 7.58 ) BEST FITNESS (o)is 6.27072 mri =0.000 curv = 2.071 unmri = -14.556 ( f=0.00 , v=0.00 , c=2.07 , q= 4.14 ) ( f=0.00 , v=0.00 , c=2.07 , q= 4.14 ) BEST FITNESS (o)is 6.89691 mri =0.000 curv = 1.427 unmri = -12.607 ( f=0.00 , v=0.00 , c=1.43 , q= 2.85 ) ( f=0.00 , v=0.00 , c=1.43 , q= 2.85 ) BEST FITNESS (o)is 93.07730 mri =0.000 curv = 1.706 unmri = -99.900 ( f=0.00 , v=0.00 , c=1.71 , q= 3.41 ) ( f=0.00 , v=0.00 , c=1.71 , q= 3.41 ) BEST FITNESS (M) is 314.33689 mri =0.000 curv = 1.467 unmri = -320.205 ( f=0.00 , v=0.00 , c=1.47 , q= 2.93 ) ( f=0.00 , v=0.00 , c=1.47 , q= 2.93 ) 84 patches have been generated - 37 self-intersected max face = 259(391) - loop = 2 (2) - ntries = [40,114] BEST FITNESS (o)is 296.81244 mri =0.000 curv = 1.594 unmri = -303.188 ( f=0.00 , v=0.00 , c=1.59 , q= 3.19 ) ( f=0.00 , v=0.00 , c=1.59 , q= 3.19 ) BEST FITNESS (M) is 318.53964 mri =0.000 curv = 3.210 unmri = -331.378 ( f=0.00 , v=0.00 , c=3.21 , q= 6.42 ) ( f=0.00 , v=0.00 , c=3.21 , q= 6.42 ) BEST FITNESS (o)is 335.93468 mri =0.000 curv = 1.255 unmri = -340.954 ( f=0.00 , v=0.00 , c=1.25 , q= 2.51 ) ( f=0.00 , v=0.00 , c=1.25 , q= 2.51 ) BEST FITNESS (M) is 355.06954 mri =0.000 curv = 4.350 unmri = -372.471 ( f=0.00 , v=0.00 , c=4.35 , q= 8.70 ) ( f=0.00 , v=0.00 , c=4.35 , q= 8.70 ) BEST FITNESS (M) is 368.30011 mri =0.000 curv = 3.207 unmri = -381.129 ( f=0.00 , v=0.00 , c=3.21 , q= 6.41 ) ( f=0.00 , v=0.00 , c=3.21 , q= 6.41 ) 84 patches have been generated - 35 self-intersected INITIAL FITNESS : 0.00000 FINAL FITNESS : 368.30011 # generated patches : 168 (72 self-intersecting) AFTER CORRECTION, EULER IS -150 Surface Diagnostics: eno=-150 (nv=159414, nf=319128, ne=478692) # of border vertices [ #v ~ #f ] 0 # of edges with single face 0 # of edges with more than 2 faces 0 # of corner configurations 0 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Correcting Topology of defect 75 with euler number -39 (20 loops) computing statistics for defect 75: 4636 vertices location: [ (164,151,151) - average intensity = 87.477 ] -gray ( 82.03 , 3.55 ) -white ( 92.43 , 3.28 ) -gray ( 82.73 , 19.24 ) -white ( 95.35 , 17.58 ) -intensity (82.027794 [log = -2.192922 ]- 92.432129 [log = -2.104327 ]) -curv (k1=-0.185 (0.669) , r1 = 5.417 | k2=-0.055 (0.166), r2 = 18.074 ) -curv (k1=-0.149 (0.706) , r1 = 6.697 | k2=-0.029 (0.248), r2 = 34.012 ) max face = 8885(8885) - loop = 1 (20) - ntries = [100,3564] BEST FITNESS (o)is -5.37787 mri =0.000 curv = 1.200 unmri = 0.578 ( f=0.00 , v=0.00 , c=1.20 , q= 2.40 ) ( f=0.00 , v=0.00 , c=1.20 , q= 2.40 ) BEST FITNESS (M) is 8.02237 mri =0.000 curv = 1.249 unmri = -13.019 ( f=0.00 , v=0.00 , c=1.25 , q= 2.50 ) ( f=0.00 , v=0.00 , c=1.25 , q= 2.50 ) BEST FITNESS (M) is 10.66971 mri =0.000 curv = 1.178 unmri = -15.382 ( f=0.00 , v=0.00 , c=1.18 , q= 2.36 ) ( f=0.00 , v=0.00 , c=1.18 , q= 2.36 ) BEST FITNESS (M) is 14.45333 mri =0.000 curv = 1.250 unmri = -19.455 ( f=0.00 , v=0.00 , c=1.25 , q= 2.50 ) ( f=0.00 , v=0.00 , c=1.25 , q= 2.50 ) BEST FITNESS (M) is 71.35248 mri =0.000 curv = 1.665 unmri = -78.012 ( f=0.00 , v=0.00 , c=1.66 , q= 3.33 ) ( f=0.00 , v=0.00 , c=1.66 , q= 3.33 ) BEST FITNESS (o)is 303.81482 mri =0.000 curv = 1.158 unmri = -308.445 ( f=0.00 , v=0.00 , c=1.16 , q= 2.32 ) ( f=0.00 , v=0.00 , c=1.16 , q= 2.32 ) BEST FITNESS (o)is 430.76973 mri =0.000 curv = 1.160 unmri = -435.408 ( f=0.00 , v=0.00 , c=1.16 , q= 2.32 ) ( f=0.00 , v=0.00 , c=1.16 , q= 2.32 ) BEST FITNESS (M) is 655.65808 mri =0.000 curv = 1.190 unmri = -660.417 ( f=0.00 , v=0.00 , c=1.19 , q= 2.38 ) ( f=0.00 , v=0.00 , c=1.19 , q= 2.38 ) 224 patches have been generated - 103 self-intersected max face = 8885(8977) - loop = 2 (20) - ntries = [100,3564] BEST FITNESS (o)is 654.96224 mri =0.000 curv = 1.219 unmri = -659.839 ( f=0.00 , v=0.00 , c=1.22 , q= 2.44 ) ( f=0.00 , v=0.00 , c=1.22 , q= 2.44 ) BEST FITNESS (o)is 656.91377 mri =0.000 curv = 1.186 unmri = -661.660 ( f=0.00 , v=0.00 , c=1.19 , q= 2.37 ) ( f=0.00 , v=0.00 , c=1.19 , q= 2.37 ) BEST FITNESS (M) is 658.60419 mri =0.000 curv = 1.226 unmri = -663.506 ( f=0.00 , v=0.00 , c=1.23 , q= 2.45 ) ( f=0.00 , v=0.00 , c=1.23 , q= 2.45 ) BEST FITNESS (M) is 671.00884 mri =0.000 curv = 1.198 unmri = -675.799 ( f=0.00 , v=0.00 , c=1.20 , q= 2.40 ) ( f=0.00 , v=0.00 , c=1.20 , q= 2.40 ) BEST FITNESS (M) is 675.63041 mri =0.000 curv = 1.259 unmri = -680.665 ( f=0.00 , v=0.00 , c=1.26 , q= 2.52 ) ( f=0.00 , v=0.00 , c=1.26 , q= 2.52 ) BEST FITNESS (M) is 681.88151 mri =0.000 curv = 1.429 unmri = -687.596 ( f=0.00 , v=0.00 , c=1.43 , q= 2.86 ) ( f=0.00 , v=0.00 , c=1.43 , q= 2.86 ) BEST FITNESS (M) is 733.58556 mri =0.000 curv = 1.610 unmri = -740.024 ( f=0.00 , v=0.00 , c=1.61 , q= 3.22 ) ( f=0.00 , v=0.00 , c=1.61 , q= 3.22 ) 221 patches have been generated - 101 self-intersected max face = 8885(9089) - loop = 3 (20) - ntries = [100,3564] BEST FITNESS (o)is 732.89991 mri =0.000 curv = 1.637 unmri = -739.446 ( f=0.00 , v=0.00 , c=1.64 , q= 3.27 ) ( f=0.00 , v=0.00 , c=1.64 , q= 3.27 ) BEST FITNESS (o)is 742.27192 mri =0.000 curv = 1.908 unmri = -749.905 ( f=0.00 , v=0.00 , c=1.91 , q= 3.82 ) ( f=0.00 , v=0.00 , c=1.91 , q= 3.82 ) BEST FITNESS (o)is 746.24435 mri =0.000 curv = 2.301 unmri = -755.447 ( f=0.00 , v=0.00 , c=2.30 , q= 4.60 ) ( f=0.00 , v=0.00 , c=2.30 , q= 4.60 ) BEST FITNESS (M) is 763.88117 mri =0.000 curv = 1.831 unmri = -771.203 ( f=0.00 , v=0.00 , c=1.83 , q= 3.66 ) ( f=0.00 , v=0.00 , c=1.83 , q= 3.66 ) 219 patches have been generated - 99 self-intersected max face = 8885(9241) - loop = 4 (20) - ntries = [100,3564] BEST FITNESS (o)is 763.20189 mri =0.000 curv = 1.856 unmri = -770.625 ( f=0.00 , v=0.00 , c=1.86 , q= 3.71 ) ( f=0.00 , v=0.00 , c=1.86 , q= 3.71 ) BEST FITNESS (M) is 804.13259 mri =0.000 curv = 1.872 unmri = -811.622 ( f=0.00 , v=0.00 , c=1.87 , q= 3.74 ) ( f=0.00 , v=0.00 , c=1.87 , q= 3.74 ) 229 patches have been generated - 120 self-intersected max face = 8885(9337) - loop = 5 (20) - ntries = [100,3564] BEST FITNESS (o)is 803.45528 mri =0.000 curv = 1.897 unmri = -811.044 ( f=0.00 , v=0.00 , c=1.90 , q= 3.79 ) ( f=0.00 , v=0.00 , c=1.90 , q= 3.79 ) BEST FITNESS (M) is 823.35786 mri =0.000 curv = 1.908 unmri = -830.990 ( f=0.00 , v=0.00 , c=1.91 , q= 3.82 ) ( f=0.00 , v=0.00 , c=1.91 , q= 3.82 ) 220 patches have been generated - 102 self-intersected max face = 8885(9401) - loop = 6 (20) - ntries = [100,3564] BEST FITNESS (o)is 822.64929 mri =0.000 curv = 1.940 unmri = -830.411 ( f=0.00 , v=0.00 , c=1.94 , q= 3.88 ) ( f=0.00 , v=0.00 , c=1.94 , q= 3.88 ) BEST FITNESS (o)is 828.29276 mri =0.000 curv = 2.715 unmri = -839.155 ( f=0.00 , v=0.00 , c=2.72 , q= 5.43 ) ( f=0.00 , v=0.00 , c=2.72 , q= 5.43 ) BEST FITNESS (o)is 828.37479 mri =0.000 curv = 2.091 unmri = -836.738 ( f=0.00 , v=0.00 , c=2.09 , q= 4.18 ) ( f=0.00 , v=0.00 , c=2.09 , q= 4.18 ) BEST FITNESS (M) is 840.16941 mri =0.000 curv = 1.948 unmri = -847.962 ( f=0.00 , v=0.00 , c=1.95 , q= 3.90 ) ( f=0.00 , v=0.00 , c=1.95 , q= 3.90 ) BEST FITNESS (M) is 840.36709 mri =0.000 curv = 1.936 unmri = -848.111 ( f=0.00 , v=0.00 , c=1.94 , q= 3.87 ) ( f=0.00 , v=0.00 , c=1.94 , q= 3.87 ) 224 patches have been generated - 109 self-intersected max face = 8885(9449) - loop = 7 (20) - ntries = [100,3564] ERROR: _FindFacePath: could not find path! Linux fedoraneuro.lim.local 2.6.23.14-64.fc7 #1 SMP Sun Jan 20 22:20:19 EST 2008 x86_64 x86_64 x86_64 GNU/Linux recon-all exited with ERRORS at Tue Sep 16 07:31:33 CEST 2008