x $ mri_glmfit --y rh.resilience_extra.volume.10.mgh --fsgd resilience_WMC2_extra.fsgd --C resilience.mtx --surf fsaverage rh --cortex --glmdir rh.resilience_WMC2_extra.volume.10.glmdir
gdfRead(): reading resilience_WMC2_extra.fsgd
INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done.
Continuous Variable Means (all subjects)
0 resilience 5.89838e-10 0.995227
1 ICV -3.20198e-09 0.995227
2 Age -4.87836e-10 0.995227
Class Means of each Continuous Variable
1 1   0.0000  -0.0000  -0.0000 
INFO: gd2mtx_method is dods
Reading source surface /data/Psychiatrie/Meike_Hettwer/CTFreesurfer/WMC2_new_n4/fsaverage/surf/rh.white
Number of vertices 163842
Number of faces    327680
Total area         65020.839844
AvgVtxArea       0.396851
AvgVtxDist       0.717994
StdVtxDist       0.193566
$Id: mri_glmfit.c,v 1.241.2.4 2016/12/08 22:02:40 zkaufman Exp $
cwd /data/Psychiatrie/Meike_Hettwer/CTFreesurfer/WMC2_new_n4
cmdline mri_glmfit.bin --y rh.resilience_extra.volume.10.mgh --fsgd resilience_WMC2_extra.fsgd --C resilience.mtx --surf fsaverage rh --cortex --glmdir rh.resilience_WMC2_extra.volume.10.glmdir 
sysname  Linux
hostname beo-05
machine  x86_64
user     mhettwer
FixVertexAreaFlag = 1
UseMaskWithSmoothing     1
OneSampleGroupMean 0
y    /data/Psychiatrie/Meike_Hettwer/CTFreesurfer/WMC2_new_n4/rh.resilience_extra.volume.10.mgh
logyflag 0
usedti  0
FSGD resilience_WMC2_extra.fsgd
labelmask  /data/Psychiatrie/Meike_Hettwer/CTFreesurfer/WMC2_new_n4/fsaverage/label/rh.cortex.label
maskinv 0
glmdir rh.resilience_WMC2_extra.volume.10.glmdir
IllCondOK 0
ReScaleX 1
DoFFx 0
Creating output directory rh.resilience_WMC2_extra.volume.10.glmdir
Loading y from /data/Psychiatrie/Meike_Hettwer/CTFreesurfer/WMC2_new_n4/rh.resilience_extra.volume.10.mgh
   ... done reading.
INFO: gd2mtx_method is dods
Saving design matrix to rh.resilience_WMC2_extra.volume.10.glmdir/Xg.dat
Computing normalized matrix
Normalized matrix condition is 1.21685
Matrix condition is 1.21685
Found 149926 points in label.
Pruning voxels by thr: 1.175494e-38
Found 148496 voxels in mask
Saving mask to rh.resilience_WMC2_extra.volume.10.glmdir/mask.mgh
Reshaping mriglm->mask...
search space = 73652.696318
ERROR: dimension mismatch between y and X.
  y has 102 inputs, X has 105 rows.