Douglas

Ideally, when we run recon-all, it creates following sub-directories underneath each subject directory, and "tmp" folder is one of them where we usually save our control.dat file. For me when I ran recon-all it created "tmp" folder for some of them whereas skipped for rest.

bem
label
mri
scripts
src
stats
surf
tmp
touch
trash

Thanks,

Sneha

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Douglas Greve <greve@nmr.mgh.harvard.edu>
Sent: Friday, October 28, 2016 11:27:25 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] tmp directory not created

which tmp folder?

On 10/26/16 11:26 AM, Sneha Pandya wrote:

Hi all,

I am running recon-all stream for ~200 subjects and after successful run of them I observed that for some of the patients recon-all ran successfully without error but it did not create "tmp" sub-folder. Can anyone please advice when recon-all stream does not create "tmp" folder and do I need to run these subjects again even after its successful completion?

Thanks,
Sneha
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
MailScanner has detected a possible fraud attempt from "urldefense.proofpoint.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer