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Hi there,

I am attempting to concat a number of volume files that are filled cortical ribbons from a series of label files.

My workflow is to take the following steps:

Convert overlay file to label file

 mri_vol2label --i ${inDir}/Indi_Matched_ROIs/${net}/${sub}/${hemi}.${netMaskName}_native.mgh \
    --id 1 \
    --l ${inDir}/Indi_Matched_ROIs/${net}/${sub}/${hemi}.${netMaskName}_native.label \
    --surf ${sub} ${hemi} white \
    --dilate 2
  mri_label2label --srclabel ${inDir}/Indi_Matched_ROIs/${net}/${sub}/${hemi}.${netMaskName}_native.label \
    --s ${sub} \
    --hemi ${hemi} \
    --trglabel /${subDir}/${sub}/label/li2019/${hemi}.${netMaskName}_native.label \
    --regmethod surface

Convert label to volume

  mri_label2vol --label /${subDir}/${sub}/label/li2019/${hemi}.${netMaskName}_native.label \
  --identity \
  --fill-ribbon \
  --subject ${sub} \
  --hemi ${hemi} \
  --o /${subDir}/${sub}/mri/li2019_vols/${hemi}.${netMaskName}_native.mgz

Finally concatenate the vols together

mri_concat --f rois.txt  --o yeo2011_nat.mgz --sum
ninputs = 104
Checking inputs
nframestot = 104
Allocing output
Done allocing
Killed

Not sure why this is being killed.

OS: WSL2 Ubuntu

FS version:   freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b

Thanks for your help!

--

Benjamin L. Deck

Doctoral Student

Applied Cognitive and Brain Sciences

Department of Psychological and Brain Sciences

Drexel University

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