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Hi there,

Having issues with the following command:

mri_label2vol --annot lh.yeo_2011.annot --temp /mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/mri/orig.mgz  --hemi lh --fill-ribbon --identity --subject sub-DAEK --o lh.sub-DAEK_annot_nat.nii.gz

produces the following error:

Number of labels: 0
Annot File:      lh.yeo_2011.annot
Template Volume: /mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/mri/orig.mgz
Outut Volume: lh.sub-DAEK_annot_nat.nii.gz
Registration File: (null)
Fill Threshold: 0
Label Vox Vol:  1
ProjType:       (null)
ProjTypeId:     0
ProjStart:      0
ProjStop:       0
ProjDelta:      0.1
Subject:  sub-DAEK
Hemi:     lh
UseNewASeg2Vol:  0
DoLabelStatVol  0
LabelCodeOffset  0
setenv SUBJECTS_DIR /mnt/c/Users/Ben/freesurfer/subjects
7.2.0
Template RAS-to-Vox: --------
-1.25000  -0.00000  -0.00000   160.00000;
-0.00000  -0.00000  -1.25000   160.00000;
-0.00000   1.25000  -0.00000   160.00000;
-0.00000  -0.00000  -0.00000   1.00000;
Template Voxel Volume: 0.512
nHits Thresh: 0
Using Identity Matrix
RegMat: --------
 1.00000   0.00000   0.00000   0.00000;
 0.00000   1.00000   0.00000   0.00000;
 0.00000   0.00000   1.00000   0.00000;
 0.00000   0.00000   0.00000   1.00000;
Label RAS-to-Vox: --------
-1.25000   0.00000   0.00000   160.00000;
 0.00000   0.00000  -1.25000   160.00000;
 0.00000   1.25000   0.00000   160.00000;
 0.00000   0.00000   0.00000   1.00000;
  INFO: loading surface  /mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/surf/lh.white
nvertices = 253237
Reading thickness /mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/surf/lh.thickness
Loading annotations from lh.yeo_2011.annot
annotidmax = 48
nlabels = 48
Loading /mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/mri/ribbon.mgz
Mapping
Segmentation fault

But when I run the same command without fill-ribbon the process runs to completion.

Not sure if this is a memory issue or something else.

Ben

--

Benjamin L. Deck

Doctoral Student

Applied Cognitive and Brain Sciences

Department of Psychological and Brain Sciences

Drexel University

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