I'm not sure it's fixable then. Any idea what they are?BruceThey are bright in orig.mgz. You can see in the pictured attachmentsOn Mon, Oct 21, 2013 at 1:51 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
why are they so bright? Are they that way before intensity normalization (e.g. in the orig.mgz)?The information in this e-mail is intended only for the person to whom it is
On Mon, 21 Oct 2013, Jonathan Holt wrote:
FS experts,
Freesurfer has been omitting extremely bright/intense white and grey matter voxels (avg intensity ~150).
Mostly this happens in areas that should be encompassed by the surfaces. Is there a way to tell recon-all
to include these areas?
I fear it may believe they are dura because of the similar intensity values.
jon
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
<Screen Shot 2013-10-21 at 2.01.00 PM.png><Screen Shot 2013-10-21 at 2.00.45 PM.png>_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer