Hi Maryam
I guess, although it's hard to say without looking at your data. I think
the upcoming V6 does much better on the midline. If you upload your
data I can take a look. For the command line you can check out the
recon-all help and just rerun the pial surface generation
cheers
Bruce
On Mon, 7 Mar 2016, maryam koochaki wrote:
> Hi Bruce,
> I am editing aseg to correct the boundaries that excluded the lateral
> ventricle. The problem with lateral ventricle has been solved after running
> the process with -noaseg flag.
> But the boundaries in the middle, is crossing to the other hemesphere in
> some cases.
>
> I even tried -autorecon2-cp, the problem still exists.
> aparc+aseg has not been updated after running the process.
>
> Does Celine's case apply to mine? Here is your answer to Celine:
>
> Hi Celine
> the only existing way to correct this would be to create two volumes in
> addition to brain.finalsurfs.mgz (say, lh.brain.finalsurfs.mgz and
> rh.brain.finalsurfs.mgz) and edit each of them to remove voxels in the
> contralateral hemisphere that are causing problems, then rerun
> mris_make_surfaces for each hemi, using the appropriate volume. At some
> point I guess we should put an intersection check into it for the contra
> hemi
> cheers
> Bruce
>
> Could you help me with the exact command line?
>
> Thank you in advance for your help,
> Maryam
>
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