I ran the process, but it came up with an error that says "error: make_roi_paths did not complete successfully." I have attached the recon-all.log so hopefully someone can take a look at it and give me some pointers on what I can do to fix this.

Thank you again!

On Sat, Mar 5, 2016 at 8:35 AM, Ankita Chatterjee <achat04@gmail.com> wrote:

That's perfect. I think that solved the issue. It was not referencing the matlab files from freesurfer I guess. Thank you so much! It seems to be processing now!

Thanks!
Ankita

On Sat, Mar 5, 2016 at 8:05 AM, Ankita Chatterjee <achat04@gmail.com> wrote:
Thank you for the pointer Woo-Suk. So to do that, I just do an EXPORT PATH on Matlab? I am not very familiar with linux...

Thanks!
Ankita