On Tue, Apr 24, 2012 at 4:02 PM, Anastasia Yendiki <ayendiki@nmr.mgh.harvard.edu> wrote:

Hi Richard - I'd check your bedpostx output files, run mri_info on them to make sure they have the right number of slices. The monitoring script that produces the "slices processed" messages checks only every once in a while, so you won't see a separate message for each slice.

The warnings from the -path part you can definitely ignore.

Hope this helps,
a.y

On Tue, 24 Apr 2012, Richard Binney wrote:

Hi Anastasia,

I ran bedpost directly: bedpostx dmri

It seemed to run fine, not exiting with any errors. the only thing that concerned me was that the last output in the terminal was

50 slices processed  [when I have 54]
queing post-processing stage

then it exited. It seemed to run rather quicker than I expected and I expected it to at least output  "all slices processed" and/or something after queing post

Is there any reason to be concerned?

Furthermore, in running the -path, the terminal window constantly outputting...

ERROR: Degenerate spline segment
58 81 24
56 69 24
......
ERROR: Degenerate spline segment
......

but it seems to continue on without exiting. Is there any reason to be concerned about this? what doe sit mean?

Thanks for your help

R

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