Thank you, you are correct, I figured that my analysis was actually using a subset of the runs which doesn't contain all 69 conditions.  I would still like to use this subset of runs so I think I will make new para files that assign less conditions (some conditions are stimuli of similar types that can probably be put together, like multiple different faces, multiple different bodies, etc.).

Cheers,

Gabe


On Wed, Jul 14, 2010 at 6:34 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:
Within a given session you must have all conditions represented. They all do not need to be in the same run, but they must all appear at least once across all runs. It looks like only 33 of the 69 are there. BTW, 69 is probably not a realistic number of conditions, way too big.

doug

Gabriel A. Tobon wrote:
Sorry about that, I attached the wrong error msg from while I was trying "selxavg3-sess".  They are numbered 1-69.

Wed Jul 14 18:24:59 EDT 2010
INFO (kan_ecev_207ab): RunList = 008 009 010 011 012 013 014 015 016 017 018 019 020 021
ERROR: there are 33 non-null conditions in the
paradigm file. However, 69 non-null conditions were
specified when mkanalysis was run. These must be made
consistent in order to run selxavg-sess.

What is the difference between "selxavg-sess" and "selxavg3-sess"?  The error from "selxavg3-sess" says:

??? Error using ==> svd
Input to SVD must not contain NaN or Inf.

Error in ==> cond at 40
  s = svd(A);

Error in ==> fast_selxavg3 at 248
 XCond = cond(XtX);

>> ------------------------------------------
ERROR: fast_selxavg3() failed\n


Thank you,

Gabe

On Wed, Jul 14, 2010 at 6:21 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> wrote:

   69 conditions? Are they numbered 1-69? That output does not have
   the right error msg in it.

   Gabriel A. Tobon wrote:

       Hello,

       I have event related data with 69 different conditions, and
       every condition does not appear in every run.  This causes
       selxavg-sess to throw an error.  Part of the relevant debug
       output is below.  Why does every condition need to appear in
       every run?

       Thank you,

       Gabe


       echo "$sess " | & tee -a $LF
       echo
       /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab
       tee -a
       /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log
       /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab
       date | & tee -a $LF
       date
       tee -a
       /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log
       Wed Jul 14 18:10:48 EDT 2010

       if ( ! -d $sess ) then
       if ( ! -d
       /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab
       ) then

       set funcdir = $sess/$fsd
       set funcdir =
       /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold
       set anadir = $sess/$fsd/$analysisname
       set anadir =
       /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold/mc_analyze
       if ( $#OutParent == 0 ) then
       if ( 0 == 0 ) then
       set anadir = $sess/$fsd/$analysisname
       set anadir =
       /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold/mc_analyze
       else
       else
       echo anadir = $anadir | tee -a $LF
       echo anadir =
       /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold/mc_analyze
       tee -a
       /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log
       anadir =
       /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold/mc_analyze
       if ( -e $anadir && $DoGLMFit ) then
       if ( -e
       /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold/mc_analyze
       && 1 ) then
       echo "analysis $analysis alread exists for $sessbase" | tee -a $LF
       echo analysis mc_analyze alread exists for kan_ecev_207ab
       tee -a
       /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log
       analysis mc_analyze alread exists for kan_ecev_207ab
       if ( $Skip == 0 && $Overwrite == 0 && ! $monly && ! $perrun &&
       ! $jkrun ) then
       if ( 0 == 0 && 0 == 0 && ! 0 && ! 0 && ! 0 ) then
       echo "ERROR: analysis $analysis already exists. You must " |
       tee -a $LF
       echo ERROR: analysis mc_analyze already exists. You must
       tee -a
       /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log
       ERROR: analysis mc_analyze already exists. You must
       echo "       specify whether to -skip or -overwrite" | tee -a $LF
       echo        specify whether to -skip or -overwrite
       tee -a
       /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log
             specify whether to -skip or -overwrite
       exit 1 ;
       exit 1

       ------------------------------------------------------------------------

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   --     Douglas N. Greve, Ph.D.
   MGH-NMR Center
   greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>

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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358 Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html