did all of them fail? That seems unlikely. Our failure rates are usually
pretty low (less than a couple of percent). If they are all failing
something else is wrong


On Mon, 25 Mar 2019, Chhavi Yadav wrote:

>
>         External Email - Use Caution        
>
> HI Bruce,Thanks for your email.
> I actually have 3500 files. So cant do transform on them manually. Any other way? Like downloading the
> previous version of freesurfer?
> Chhavi
>
> On Mon, Mar 25, 2019 at 10:56 AM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
>       Hi Chhavi
>
>       the automated Talairach transform creation can sometimes fail,
>       particularly in the presence of very large ventricles or lots of
>       damaged white matter or
>       both. We have a tutorial on checking and correcting it here:
>
> https://urldefense.proofpoint.com/v2/url?u=https-3A__surfer.nmr.mgh.harvard.edu_fswiki_FsTutorial_Talair
> ach-5Ffreeview&d=DwIDaQ&c=slrrB7dE8n7gBJbeO0g-IQ&r=N9tx5lNt4OZx_Y6zKcYlyQ&m=jmk4B1izuOm3OQVTtDKbHktL7QrJ
>       JELPuLToS-_5lkY&s=LpBDOkEFGzHx0owj2xszaOGP5m2RG6gsMN9vq30fOBU&e=
>
>       cheers
>       Bruce
>
>       On
>       Mon, 25 Mar 2019, Chhavi Yadav wrote:
>
>       >
>       >         External Email - Use Caution        
>       >
>       > Hi,I am a beginner to freesurfer. Never used it before.
>       > Currently I am working on some dicoms from ADNI that I want to preprocess.
>       > But I am getting this 'talairach_afd: Talairach Transform: transforms/talairach.xfm
>       ***FAILED*** ' error.
>       > I am attaching the error log and other files for your reference. Please help me out.
>       >
>       > Regards,
>       > Chhavi
>       >
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