# ---------- Using FSL's BET to Extract Brain------------------ #
/usr/local/freesurfer/subjects/Retinotopy/33333/Retinotopy
bet.fsl /tmp/mkbrainmask_14781/in.nii /tmp/mkbrainmask_14781/brain -m -f 0.1
/usr/lib/fsl/5.0/bin/bet2: error while loading shared libraries: libfslvtkio.so: cannot open shared object file: No such file or directory
It seems that something is wrong with the file libfslvtkio.so, or perhaps some path problem (I've manually set $FSLDIR to /usr/lib/fsl/5.0/). Any feedback would be greatly appreciated.
Below are the versions of software I'm using:
Linux debian 3.2.0-4-486 #1 Debian 3.2.57-3+deb7u1 i686 GNU/Linux (run in virtualbox with a Windows 8 Host)
FSL 5.0.6
freesurfer-Linux-centos4-stable-pub-v5.3.0
Many thanks,
Alan