It is a little hard to see what is going on, but the image looks pretty blurry. How does the aseg.mgz look?

On 10/24/2020 2:33 PM, Sierra Ann Jarvis wrote:

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Hello FreeSurfer Developers, 

I am attempting to run this subject through a longitudinal process. I have successfully ran and edited the cross-sectional and the .base. My problem occurs when I run the .longs. I do not receive an error in the recon-all.log, but the surfaces on the image when I pull it up on FreeView are very jumbled. Below I have attached a screenshot of a coronal slice to give you an idea of what I am dealing with. 

I ran the subject through: recon-all -long  sub_post/ sub.base -all

FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c

Recon-all log last line: recon-all -s sub-5504_post.long.sub-5504.base finished without error at Fri Oct 16 13:44:10 MDT 2020

Thank you for your time, 

Sierra Jarvis