The name of which label?

On 07/02/2014 02:00 PM, Corinna Bauer wrote:
> Whereby the label name is derived from which, the GM labels? i.e.
> lh.rostralmiddlefrontal_div3
>
>
> On Wed, Jul 2, 2014 at 11:45 AM, Bruce Fischl

> <fischl@nmr.mgh.harvard.edu <mailto:fischl@nmr.mgh.harvard.edu>> wrote:
>
>     yes, or mri_binarize --match
>
>
>     cheers
>     Bruce
>
>
>     On Wed, 2 Jul 2014, Corinna Bauer wrote:
>
>         And then for breaking the individual labels up, would
>         mri_extract_label be
>         the best option?
>
>
>         On Wed, Jul 2, 2014 at 11:01 AM, Bruce Fischl

>         <fischl@nmr.mgh.harvard.edu <mailto:fischl@nmr.mgh.harvard.edu>>

>         wrote:
>               Hi Corinna
>
>               you need to give some output extension so it knows what file
>               type to write (e.g. .mgz, .nii, .nii.gz. mgh, ...)
>
>               cheers
>               Bruce
>
>               On Wed, 2 Jul 2014, Corinna Bauer wrote:
>
>                     Hi Bruce,
>
>                     I am trying to do just that using the following
>                     command line:
>                     mri_aparc2aseg --s ${subject} --labelwm --hypo-as-wm
>                     --rip-unknown --volmask
>                     --o ${subj_dir}/mri/wmdivided --annot aparc.split
>
>                     After the slice labeling, I get the following:
>
>                     Used brute-force search on 872 voxels
>                     Fixing Parahip LH WM
>                       Found 0 clusters
>                     Fixing Parahip RH WM
>                       Found 0 clusters
>                     Writing output aseg to
>
>         /home/bauer/freesurfer_subjects/FSH_09062013/mri/wmdivided
>                     unknown file type for file
>
>         (/home/bauer/freesurfer_subjects/FSH_09062013/mri/wmdivided)
>                     subject = FSH_09062013
>                     annotation = wmdivided
>                     hemi = lh
>                     outdir =
>
>         /home/bauer/freesurfer_subjects/FSH_09062013/wm_hardi_labels
>                     surface   = white
>
>                     Any suggestions?
>
>                     Thanks,
>                     Corinna
>
>
>
>                     On Tue, Jul 1, 2014 at 6:55 PM, Bruce Fischl
>                     <fischl@nmr.mgh.harvard.edu

>         <mailto:fischl@nmr.mgh.harvard.edu>>

>                     wrote:
>                           Hi Corinna
>
>                           not really, as that is a surface-based
>                     utility. You could divide
>                           the
>                           cortical labels and then recrate the wmparc
>                     from it, which might
>                           do what
>                           you want.
>
>                           cheers
>                           Bruce
>
>
>                           On Tue, 1 Jul 2014, Corinna
>                           Bauer wrote:
>
>                           > hello,
>                           > I was wondering if it was possible to use
>                           mris_divide_parcellation on white
>                           > matter labels.
>                           >
>                           > Thanks,
>                           >
>                           > Corinna
>                           >
>                           >
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