Hi Anna,

no, you would still do:

recon-all -long tpid baseid -localGI

just not use the '-all'.

Best, Martin



On 03/26/2014 11:12 AM, Anna Jonsson wrote:
thank you. But if the lnog process has already been done and these induviduals already have long directories so to speak, I would just put the lgi flag on as normal but just replace the subject name with the long subject name eg ?
recon-all -s XXXX_long -localGI

Thank you


On Sat, Mar 15, 2014 at 2:07 PM, Martin Reuter <mreuter@nmr.mgh.harvard.edu> wrote:
Hi Anna,

for the image processing, you just add the lgi flag to the regular longitudinal recon-all command
recon-all -long ……     -lgi

for the analysis after that you use the long directories.

Best, Martin

On Mar 15, 2014, at 10:04 AM, Anna Jonsson <ajonsson09@gmail.com> wrote:

Dear group,

If I want conduct gyrification analyses on the long runs that have been through the longitudinal stream, do I just perform the "normal" baseline command on the .long data?

thank you,

kind wishes

Anna
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