wo mrt 27 18:26:01 CET 2019 /home/mrphys/ilecam/scripts /opt/freesurfer/6.0/bin/trac-all -prep -c /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/tracula_out/sub030/tracula_config.txt Subject sub030 SUBJECTS_DIR /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer FREESURFER_HOME /opt/freesurfer/6.0 Actual FREESURFER_HOME /opt/freesurfer/6.0 build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c ilecam dccn-c029.dccn.nl Linux dccn-c029.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize 52428800 kbytes stacksize 12288 kbytes coredumpsize unlimited memoryuse 52428800 kbytes vmemoryuse unlimited descriptors 32768 memorylocked unlimited maxproc 1030756 maxlocks unlimited maxsignal 1030756 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 263904216 21545584 218269052 1676364 24089580 239930160 Swap: 52428796 1721732 50707064 ######################################## Program versions: $Id: trac-all,v 1.60.2.1 2016/12/20 17:04:05 zkaufman Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/27-17:26:01-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: ilecam Machine: dccn-c029.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/27-17:26:01-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: dccn-c029.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/27-17:26:01-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: dccn-c029.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2019/03/27-17:26:01-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: dccn-c029.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/27-17:26:01-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: dccn-c029.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/03/27-17:26:01-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: dccn-c029.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2019/03/27-17:26:01-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: dccn-c029.dccn.nl Platform: Linux PlatformVersion: 4.4.121-1.el7.elrepo.x86_64 CompilerName: GCC CompilerVersion: 40400 New invocation of trac-preproc ilecam dccn-c029.dccn.nl Linux dccn-c029.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize 52428800 kbytes stacksize 12288 kbytes coredumpsize unlimited memoryuse 52428800 kbytes vmemoryuse unlimited descriptors 32768 memorylocked unlimited maxproc 1030756 maxlocks unlimited maxsignal 1030756 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 263904216 21606552 218208084 1676364 24089580 239869192 Swap: 52428796 1721732 50707064 #------------------------------------- /opt/freesurfer/6.0/bin/trac-preproc #------------------------------------- #@# Image corrections wo mrt 27 18:26:01 CET 2019 mri_convert --bvec-voxel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/sub030/FDT_Data/data.nii.gz /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/tracula_out/sub030/sub030/dmri/dwi_orig.nii.gz mri_convert.bin --bvec-voxel /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/sub030/FDT_Data/data.nii.gz /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/tracula_out/sub030/sub030/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/sub030/FDT_Data/data.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995489, -0.0948591, -0.00209126) j_ras = (-0.0945215, 0.989544, 0.108942) k_ras = (0.00826476, -0.108648, 0.994046) writing to /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/tracula_out/sub030/sub030/dmri/dwi_orig.nii.gz... cp /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/sub030/FDT_Data/bvecs /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/tracula_out/sub030/sub030/dmri/dwi_orig.bvecs cp /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/sub030/FDT_Data/bvals /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/tracula_out/sub030/sub030/dmri/dwi_orig.bvals mv -f /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/tracula_out/sub030/sub030/dmri/bvecs.tmp /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/tracula_out/sub030/sub030/dmri/dwi_orig.bvecs mv -f /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/tracula_out/sub030/sub030/dmri/bvals.tmp /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/tracula_out/sub030/sub030/dmri/dwi_orig.bvals orientLAS /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/tracula_out/sub030/sub030/dmri/dwi_orig.nii.gz /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/tracula_out/sub030/sub030/dmri/dwi_orig_las.nii.gz INFO: input image orientation is LAS INFO: input image determinant is -15.625 mri_convert -oni 128 -onj 128 -onk 64 -oid 0 0 0 -ojd 0 0 0 -okd 0 0 0 -oc -1 -14 18 -rt nearest /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/tracula_out/sub030/sub030/dmri/dwi_orig.nii.gz /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/tracula_out/sub030/sub030/dmri/dwi_orig_las.nii.gz mri_convert.bin -oni 128 -onj 128 -onk 64 -oid 0 0 0 -ojd 0 0 0 -okd 0 0 0 -oc -1 -14 18 -rt nearest /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/tracula_out/sub030/sub030/dmri/dwi_orig.nii.gz /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/tracula_out/sub030/sub030/dmri/dwi_orig_las.nii.gz mri_convert.bin: directions must have non-zero magnitude; out_i_direction = (0, 0, 0) type mri_convert.bin -u for usage INFO: found /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/tracula_out/sub030/sub030/dmri/dwi_orig.bvals, copying INFO: found /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/tracula_out/sub030/sub030/dmri/dwi_orig.bvecs, converting to LAS mv -f /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/tracula_out/sub030/sub030/dmri/dwi_orig_las.bvecs /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/tracula_out/sub030/sub030/dmri/bvecs mv -f /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/tracula_out/sub030/sub030/dmri/dwi_orig_las.bvals /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/tracula_out/sub030/sub030/dmri/bvals mv -f /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/tracula_out/sub030/sub030/dmri/dwi_orig_las.nii.gz /project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/tracula_out/sub030/sub030/dmri/dwi.nii.gz mv: cannot stat ���/project/3015068.01/ilecam/RUNDMC_dwi_2015/subset_declined_constant/test_tracula/freesurfer/tracula_out/sub030/sub030/dmri/dwi_orig_las.nii.gz���: No such file or directory Linux dccn-c029.dccn.nl 4.4.121-1.el7.elrepo.x86_64 #1 SMP Sun Mar 11 14:33:50 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux trac-preproc exited with ERRORS at wo mrt 27 18:26:20 CET 2019