External Email - Use Caution
Here is the par file for Subject22,Run012
On Mon, Jan 4, 2021 at 7:07 AM Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edu> wrote:
Can you send the par file for run 012?_______________________________________________
On 12/28/2020 9:24 AM, Nina Khatibi wrote:
External Email - Use Caution
Sure. Yes, all subjects have a paradigm file generated by matlab. It's full terminal output for "selxavg3-sess -sf /Volumes/ADATA/FunctionalData/SubjectsList -analysis fsaverage5Con2Sec.lh -run-wise " for subject22
Surface data fsaverage lh
--------------------------------------------------------------
selxavg3-sess logfile is /Volumes/ADATA/FunctionalData/log/selxavg3-sess-bold-fsaverage5Con2Sec.lh-201228173226.log
--------------------------------------------------------------
selxavg3-sess log file
/Applications/freesurfer/7.1.1/fsfast/bin/selxavg3-sess
-sf /Volumes/ADATA/FunctionalData/SubjectsList -analysis fsaverage5Con2Sec.lh -run-wise
FreeSurferEnv.csh 7.1.1
uid=501(ninakhatibi) gid=20(staff) groups=20(staff),12(everyone),61(localaccounts),79(_appserverusr),80(admin),81(_appserveradm),98(_lpadmin),701(com.apple.sharepoint.group.1),33(_appstore),100(_lpoperator),204(_developer),250(_analyticsusers),395(com.apple.access_ftp),398(com.apple.access_screensharing),399(com.apple.access_ssh)
/Volumes/ADATA/FunctionalData
Darwin Ninas-MacBook-Pro.local 18.7.0 Darwin Kernel Version 18.7.0: Fri Oct 30 12:37:06 PDT 2020; root:xnu-4903.278.44.0.2~1/RELEASE_X86_64 x86_64
Mon Dec 28 17:32:29 +0330 2020
preproc-sess -s Subject22 -d /Volumes/ADATA/FunctionalData -a fsaverage5Con2Sec.lh -nolog
--------------------------------------------------------------
preproc-sess logfile is /dev/null
--------------------------------------------------------------
FreeSurferEnv.csh 7.1.1
ninakhatibi
setenv FREESURFER_HOME /Applications/freesurfer/7.1.1
setenv SUBJECTS_DIR /Users/ninakhatibi/Desktop/Project/Recon
Darwin Ninas-MacBook-Pro.local 18.7.0 Darwin Kernel Version 18.7.0: Fri Oct 30 12:37:06 PDT 2020; root:xnu-4903.278.44.0.2~1/RELEASE_X86_64 x86_64
/Volumes/ADATA/FunctionalData
/Applications/freesurfer/7.1.1/fsfast/bin/preproc-sess
-s Subject22 -d /Volumes/ADATA/FunctionalData -a fsaverage5Con2Sec.lh -nolog
Mon Dec 28 17:32:31 +0330 2020
instem f
mc 1 f fmcpr
stc 0 fmcpr
sm 0
mask 1 brain
Subject22 Template -----------------------------
mktemplate-sess -s Subject22 -d /Volumes/ADATA/FunctionalData -fsd bold -funcstem f -nolog -update
Session: /Volumes/ADATA/FunctionalData/Subject22 ----------------
Mon Dec 28 17:32:31 +0330 2020
Detected input format at nii
Subject22 Update not needed
Run: 003 ----------------
Mon Dec 28 17:32:32 +0330 2020
Subject22 003 Update not needed
Run: 004 ----------------
Mon Dec 28 17:32:32 +0330 2020
Subject22 004 Update not needed
Run: 005 ----------------
Mon Dec 28 17:32:32 +0330 2020
Subject22 005 Update not needed
Run: 006 ----------------
Mon Dec 28 17:32:32 +0330 2020
Subject22 006 Update not needed
Run: 007 ----------------
Mon Dec 28 17:32:32 +0330 2020
Subject22 007 Update not needed
Run: 008 ----------------
Mon Dec 28 17:32:32 +0330 2020
Subject22 008 Update not needed
Run: 009 ----------------
Mon Dec 28 17:32:32 +0330 2020
Subject22 009 Update not needed
Run: 010 ----------------
Mon Dec 28 17:32:32 +0330 2020
Subject22 010 Update not needed
Run: 011 ----------------
Mon Dec 28 17:32:32 +0330 2020
Subject22 011 Update not needed
Run: 012 ----------------
Mon Dec 28 17:32:32 +0330 2020
Subject22 012 Update not needed
Run: 013 ----------------
Mon Dec 28 17:32:33 +0330 2020
Subject22 013 Update not needed
Run: 014 ----------------
Mon Dec 28 17:32:33 +0330 2020
Subject22 014 Update not needed
Run: 015 ----------------
Mon Dec 28 17:32:33 +0330 2020
Subject22 015 Update not needed
Run: 016 ----------------
Mon Dec 28 17:32:33 +0330 2020
Subject22 016 Update not needed
Run: 017 ----------------
Mon Dec 28 17:32:33 +0330 2020
Subject22 017 Update not needed
Mon Dec 28 17:32:33 +0330 2020
mktemplate-sess completed
Subject22 Registration -----------------------------
register-sess -s Subject22 -d /Volumes/ADATA/FunctionalData -fsd bold -delete-dat -dof 6 -bold -per-run -nolog -update -init-coreg
--------------------------------------------------------------
register-sess logfile is /dev/null
--------------------------------------------------------------
Mon Dec 28 17:32:33 +0330 2020
setenv SUBJECTS_DIR /Users/ninakhatibi/Desktop/Project/Recon
cd /Volumes/ADATA/FunctionalData
/Applications/freesurfer/7.1.1/fsfast/bin/register-sess -s Subject22 -d /Volumes/ADATA/FunctionalData -fsd bold -delete-dat -dof 6 -bold -per-run -nolog -update -init-coreg
freesurfer-darwin-macOS-7.1.1-20200811-8b40551
Darwin Ninas-MacBook-Pro.local 18.7.0 Darwin Kernel Version 18.7.0: Fri Oct 30 12:37:06 PDT 2020; root:xnu-4903.278.44.0.2~1/RELEASE_X86_64 x86_64
Session: /Volumes/ADATA/FunctionalData/Subject22 ----------------
Mon Dec 28 17:32:33 +0330 2020
/Volumes/ADATA/FunctionalData/Subject22
Run: 003 ----------------
Mon Dec 28 17:32:33 +0330 2020
Update not needed
Run: 004 ----------------
Mon Dec 28 17:32:33 +0330 2020
Update not needed
Run: 005 ----------------
Mon Dec 28 17:32:33 +0330 2020
Update not needed
Run: 006 ----------------
Mon Dec 28 17:32:34 +0330 2020
Update not needed
Run: 007 ----------------
Mon Dec 28 17:32:34 +0330 2020
Update not needed
Run: 008 ----------------
Mon Dec 28 17:32:34 +0330 2020
Update not needed
Run: 009 ----------------
Mon Dec 28 17:32:34 +0330 2020
Update not needed
Run: 010 ----------------
Mon Dec 28 17:32:34 +0330 2020
Update not needed
Run: 011 ----------------
Mon Dec 28 17:32:34 +0330 2020
Update not needed
Run: 012 ----------------
Mon Dec 28 17:32:34 +0330 2020
Update not needed
Run: 013 ----------------
Mon Dec 28 17:32:34 +0330 2020
Update not needed
Run: 014 ----------------
Mon Dec 28 17:32:34 +0330 2020
Update not needed
Run: 015 ----------------
Mon Dec 28 17:32:34 +0330 2020
Update not needed
Run: 016 ----------------
Mon Dec 28 17:32:34 +0330 2020
Update not needed
Run: 017 ----------------
Mon Dec 28 17:32:34 +0330 2020
Update not needed
Mon Dec 28 17:32:34 +0330 2020
register-sess completed
Subject22 Mask ------------------------
mkbrainmask-sess -maskstem brain -fsd bold -s Subject22 -d /Volumes/ADATA/FunctionalData -per-run -nolog -update
------------------------------------------------
/Volumes/ADATA/FunctionalData/Subject22
Mon Dec 28 17:32:34 +0330 2020
Subject22 Update not needed for session-level mask
Subject22 Update not needed for run 003 mask
Subject22 Update not needed for run 004 mask
Subject22 Update not needed for run 005 mask
Subject22 Update not needed for run 006 mask
Subject22 Update not needed for run 007 mask
Subject22 Update not needed for run 008 mask
Subject22 Update not needed for run 009 mask
Subject22 Update not needed for run 010 mask
Subject22 Update not needed for run 011 mask
Subject22 Update not needed for run 012 mask
Subject22 Update not needed for run 013 mask
Subject22 Update not needed for run 014 mask
Subject22 Update not needed for run 015 mask
Subject22 Update not needed for run 016 mask
Subject22 Update not needed for run 017 mask
Subject22 Update not needed for run 003 meanval
Subject22 Update not needed for run 004 meanval
Subject22 Update not needed for run 005 meanval
Subject22 Update not needed for run 006 meanval
Subject22 Update not needed for run 007 meanval
Subject22 Update not needed for run 008 meanval
Subject22 Update not needed for run 009 meanval
Subject22 Update not needed for run 010 meanval
Subject22 Update not needed for run 011 meanval
Subject22 Update not needed for run 012 meanval
Subject22 Update not needed for run 013 meanval
Subject22 Update not needed for run 014 meanval
Subject22 Update not needed for run 015 meanval
Subject22 Update not needed for run 016 meanval
Subject22 Update not needed for run 017 meanval
Mon Dec 28 17:32:36 +0330 2020
mkbrainmask-sess done
Subject22 MC -----------------------------
mc-sess -fstem f -fmcstem fmcpr -s Subject22 -d /Volumes/ADATA/FunctionalData -fsd bold -per-run -nolog -update
Logfile is /dev/null
-------------------------------------------
/Volumes/ADATA/FunctionalData/Subject22
RunList: 003 004 005 006 007 008 009 010 011 012 013 014 015 016 017
Subject22 003 Update not needed
Subject22 004 Update not needed
Subject22 005 Update not needed
Subject22 006 Update not needed
Subject22 007 Update not needed
Subject22 008 Update not needed
Subject22 009 Update not needed
Subject22 010 Update not needed
Subject22 011 Update not needed
Subject22 012 Update not needed
Subject22 013 Update not needed
Subject22 014 Update not needed
Subject22 015 Update not needed
Subject22 016 Update not needed
Subject22 017 Update not needed
Mon Dec 28 17:32:37 +0330 2020
mc-sess completed SUCCESSFULLY
Subject22 To Surface -----------------------------
rawfunc2surf-sess -fwhm 5 -s Subject22 -d /Volumes/ADATA/FunctionalData -fsd bold -hemi lh -trgsubject fsaverage -nolog -update -per-run
instem fmcpr
outstem fmcpr.sm5.fsaverage.hemi
------------------------------
1/1 Subject22
1/1 Subject22 003 lh ---------
Mon Dec 28 17:32:37 +0330 2020
/Volumes/ADATA/FunctionalData/Subject22/bold/003/masks/brain.fsaverage.lh.pr.nii.gz does not need updating
1/1 Subject22 004 lh ---------
Mon Dec 28 17:32:37 +0330 2020
/Volumes/ADATA/FunctionalData/Subject22/bold/004/masks/brain.fsaverage.lh.pr.nii.gz does not need updating
1/1 Subject22 005 lh ---------
Mon Dec 28 17:32:37 +0330 2020
/Volumes/ADATA/FunctionalData/Subject22/bold/005/masks/brain.fsaverage.lh.pr.nii.gz does not need updating
1/1 Subject22 006 lh ---------
Mon Dec 28 17:32:37 +0330 2020
/Volumes/ADATA/FunctionalData/Subject22/bold/006/masks/brain.fsaverage.lh.pr.nii.gz does not need updating
1/1 Subject22 007 lh ---------
Mon Dec 28 17:32:37 +0330 2020
/Volumes/ADATA/FunctionalData/Subject22/bold/007/masks/brain.fsaverage.lh.pr.nii.gz does not need updating
1/1 Subject22 008 lh ---------
Mon Dec 28 17:32:37 +0330 2020
/Volumes/ADATA/FunctionalData/Subject22/bold/008/masks/brain.fsaverage.lh.pr.nii.gz does not need updating
1/1 Subject22 009 lh ---------
Mon Dec 28 17:32:37 +0330 2020
/Volumes/ADATA/FunctionalData/Subject22/bold/009/masks/brain.fsaverage.lh.pr.nii.gz does not need updating
1/1 Subject22 010 lh ---------
Mon Dec 28 17:32:37 +0330 2020
/Volumes/ADATA/FunctionalData/Subject22/bold/010/masks/brain.fsaverage.lh.pr.nii.gz does not need updating
1/1 Subject22 011 lh ---------
Mon Dec 28 17:32:37 +0330 2020
/Volumes/ADATA/FunctionalData/Subject22/bold/011/masks/brain.fsaverage.lh.pr.nii.gz does not need updating
1/1 Subject22 012 lh ---------
Mon Dec 28 17:32:37 +0330 2020
/Volumes/ADATA/FunctionalData/Subject22/bold/012/masks/brain.fsaverage.lh.pr.nii.gz does not need updating
1/1 Subject22 013 lh ---------
Mon Dec 28 17:32:38 +0330 2020
/Volumes/ADATA/FunctionalData/Subject22/bold/013/masks/brain.fsaverage.lh.pr.nii.gz does not need updating
1/1 Subject22 014 lh ---------
Mon Dec 28 17:32:38 +0330 2020
/Volumes/ADATA/FunctionalData/Subject22/bold/014/masks/brain.fsaverage.lh.pr.nii.gz does not need updating
1/1 Subject22 015 lh ---------
Mon Dec 28 17:32:38 +0330 2020
/Volumes/ADATA/FunctionalData/Subject22/bold/015/masks/brain.fsaverage.lh.pr.nii.gz does not need updating
1/1 Subject22 016 lh ---------
Mon Dec 28 17:32:38 +0330 2020
/Volumes/ADATA/FunctionalData/Subject22/bold/016/masks/brain.fsaverage.lh.pr.nii.gz does not need updating
1/1 Subject22 017 lh ---------
Mon Dec 28 17:32:38 +0330 2020
/Volumes/ADATA/FunctionalData/Subject22/bold/017/masks/brain.fsaverage.lh.pr.nii.gz does not need updating
/Volumes/ADATA/FunctionalData/Subject22/bold/masks/brain.fsaverage.lh.pr.nii.gz does not need updating
1/1 Subject22 003 lh ---------
Mon Dec 28 17:32:38 +0330 2020
Subject22 003 Update not needed
1/1 Subject22 004 lh ---------
Mon Dec 28 17:32:38 +0330 2020
Subject22 004 Update not needed
1/1 Subject22 005 lh ---------
Mon Dec 28 17:32:38 +0330 2020
Subject22 005 Update not needed
1/1 Subject22 006 lh ---------
Mon Dec 28 17:32:38 +0330 2020
Subject22 006 Update not needed
1/1 Subject22 007 lh ---------
Mon Dec 28 17:32:38 +0330 2020
Subject22 007 Update not needed
1/1 Subject22 008 lh ---------
Mon Dec 28 17:32:38 +0330 2020
Subject22 008 Update not needed
1/1 Subject22 009 lh ---------
Mon Dec 28 17:32:38 +0330 2020
Subject22 009 Update not needed
1/1 Subject22 010 lh ---------
Mon Dec 28 17:32:38 +0330 2020
Subject22 010 Update not needed
1/1 Subject22 011 lh ---------
Mon Dec 28 17:32:38 +0330 2020
Subject22 011 Update not needed
1/1 Subject22 012 lh ---------
Mon Dec 28 17:32:38 +0330 2020
Subject22 012 Update not needed
1/1 Subject22 013 lh ---------
Mon Dec 28 17:32:38 +0330 2020
Subject22 013 Update not needed
1/1 Subject22 014 lh ---------
Mon Dec 28 17:32:38 +0330 2020
Subject22 014 Update not needed
1/1 Subject22 015 lh ---------
Mon Dec 28 17:32:38 +0330 2020
Subject22 015 Update not needed
1/1 Subject22 016 lh ---------
Mon Dec 28 17:32:38 +0330 2020
Subject22 016 Update not needed
1/1 Subject22 017 lh ---------
Mon Dec 28 17:32:38 +0330 2020
Subject22 017 Update not needed
Mon Dec 28 17:32:39 +0330 2020
rawfunc2surf-sess completed
----------------------------------------
Started at Mon Dec 28 17:32:31 +0330 2020
Ended at Mon Dec 28 17:32:39 +0330 2020
preproc-sess done
-------------------------------------------
1/1 /Volumes/ADATA/FunctionalData/Subject22
Mon Dec 28 17:32:40 +0330 2020
anadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh
DoGLMFit = 1
DoContrasts = 1
UpdateNeeded = 1
Subject22 Update needed
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/sxa3.config.txt
MLF is /tmp/selxavg3-sess-12836.m
------------------------------------------
% Mon Dec 28 17:32:39 +0330 2020
% /Volumes/ADATA/FunctionalData
% fsaverage5Con2Sec.lh
which fast_selxavg3
which fast_ldanaflac
which MRIread
fast_selxavg3b('/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/sxa3.config.txt')
if(~fast_fileexists('/tmp/selxavg3-sess-12836.ok')); quit; end
%--------------------------------
quit;
------------------------------------------
------------------------------------------
------- matlab output --------------------
< M A T L A B (R) >
Copyright 1984-2019 The MathWorks, Inc.
R2019b (9.7.0.1190202) 64-bit (maci64)
August 21, 2019
To get started, type doc.
For product information, visit MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be www.mathworks.com.
>> >> >> >> /Applications/freesurfer/7.1.1/fsfast/toolbox/fast_selxavg3.m
>> /Applications/freesurfer/7.1.1/fsfast/toolbox/fast_ldanaflac.m
>> /Applications/freesurfer/7.1.1/matlab/MRIread.m
>> >> >> starting fast_selxavg3b
#@# Subject22 ###############################
/Volumes/ADATA/FunctionalData/Subject22
-------------------------
fast_selxavg3b.m 7.1.1
-------------------------
outtop = /Volumes/ADATA/FunctionalData
Extension format = nii.gz
INFO: key nSliceGroups unrecognized, line 11, skipping
1 EastDirection.mat
2 NorthDirection.mat
3 NorthSouth.mat
4 SouthDirection.mat
5 WestDirection.mat
6 WestEast.mat
Excluding 4 points
nruns = 15
autostimdur =
outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003
Excluding 4 points
parfiles condition id list: 1 2 3 4 5
Found 149955/163842 (91.5) voxels in mask 1
Creating Design Matrix
... creation time = 0.002 sec
DoMCFit = 1
ntptot = 120, nX = 15, DOF = 105
Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/Xtmp.mat
XCond = 65.9772 (normalized)
Computing compensation for resdual AR1 bias
1 -0.5 -0.490734 (t=0.00982513)
2 -0.25 -0.271862 (t=0.0107347)
3 0 -0.0630477 (t=0.0121373)
4 0.25 0.131482 (t=0.0128401)
5 0.5 0.30087 (t=0.0164747)
AR1 Correction M: 0.0987533 1.25547
Computing contrast matrices
OLS Beta Pass
run 1 t= 0.0
reading data ... 0.57665
Global Mean 667.87
Global In-Mask Mean = 667.874 (850.594)
Rescale Target = 100
RescaleFactor = 0.149729
OLS Residual Pass
run 1 t= 0.0
reading data ... 0.576758
Saving rho1
Smoothing ACF
/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon
fsaverage lh white
Number of vertices 163842
Number of faces 327680
Total area 65416.984375
GroupSurface 82219.960938
AvgVtxArea 0.399269
AvgVtxDist 0.721953
StdVtxDist 0.195470
Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/mask.nii.gz
Found 149955 voxels in mask
Not Polynomial detrending
Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294
Only smoothing, so saving and exiting now
Found 7166 voxels with corrected AR1 > 0.90
Whitening
Computing whitening matrices
Alloc Sinv: 120 120 30 ... done t = 0.0013297 sec
seg 1 4999 nrho1 = 0.409
seg 2 4999 nrho1 = 0.473
seg 3 4999 nrho1 = 0.515
seg 4 4999 nrho1 = 0.550
seg 5 4999 nrho1 = 0.581
seg 6 4999 nrho1 = 0.604
seg 7 4999 nrho1 = 0.621
seg 8 4999 nrho1 = 0.634
seg 9 4999 nrho1 = 0.644
seg 10 4999 nrho1 = 0.656
seg 11 4999 nrho1 = 0.668
seg 12 4999 nrho1 = 0.680
seg 13 4999 nrho1 = 0.692
seg 14 4999 nrho1 = 0.704
seg 15 4999 nrho1 = 0.715
seg 16 4999 nrho1 = 0.725
seg 17 4999 nrho1 = 0.736
seg 18 4999 nrho1 = 0.746
seg 19 4999 nrho1 = 0.756
seg 20 4999 nrho1 = 0.766
seg 21 4999 nrho1 = 0.777
seg 22 4999 nrho1 = 0.790
seg 23 4999 nrho1 = 0.804
seg 24 4999 nrho1 = 0.816
seg 25 4999 nrho1 = 0.828
seg 26 4999 nrho1 = 0.841
seg 27 4999 nrho1 = 0.858
seg 28 4999 nrho1 = 0.875
seg 29 4999 nrho1 = 0.936
seg 30 4984 nrho1 = 0.996
GLS Beta Pass
run 1 t= 0.0
GLS Residual Pass
run 1 t= 0.0
Found 13887 zero-valued voxels
Computing contrasts
Starting contrasts
EastDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/EastDirection exists, deleting
Saving efficiency 8.41876
Testing Motion Correction Parameters
0.28 0.31 -0.01 0.24 1.14 0.38 -0.26 -0.37 -0.22 0.04 -0.14 -0.47 0.71 -0.14 -0.27 -0.37 0.26 0.37
NorthDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/NorthDirection exists, deleting
Saving efficiency 6.95623
Testing Motion Correction Parameters
0.10 0.64 0.80 0.71 -0.21 0.59 -0.06 -0.09 0.16 0.39 0.43 -0.48 -1.33 -0.74 -0.06 -0.09 0.06 0.10
NorthSouth J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/NorthSouth exists, deleting
Saving efficiency 4.58659
Testing Motion Correction Parameters
-0.26 0.15 0.41 0.19 -0.15 0.06 -0.18 -0.35 0.29 0.36 0.46 -0.07 -0.69 -0.28 -0.18 -0.35 0.18 0.36
SouthDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/SouthDirection exists, deleting
Saving efficiency 7.74553
Testing Motion Correction Parameters
0.71 0.27 -0.00 0.26 0.04 0.46 0.25 0.54 -0.33 -0.19 -0.32 -0.31 0.03 -0.12 0.25 0.53 -0.26 -0.55
WestDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/WestDirection exists, deleting
Saving efficiency 9.01186
Testing Motion Correction Parameters
-1.70 -2.18 -0.92 -2.10 -0.80 -2.67 0.07 -0.01 0.42 -0.24 0.04 2.29 0.39 1.57 0.07 -0.01 -0.06 0.02
WestEast J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/WestEast exists, deleting
Saving efficiency 5.89895
Testing Motion Correction Parameters
-1.16 -1.43 -0.45 -1.32 -1.32 -1.76 0.21 0.20 0.40 -0.17 0.12 1.67 -0.12 0.94 0.21 0.20 -0.20 -0.20
Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/h.dat
outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004
Excluding 4 points
parfiles condition id list: 1 2 3 4 5
Found 149955/163842 (91.5) voxels in mask 1
Creating Design Matrix
... creation time = 0.001 sec
DoMCFit = 1
ntptot = 120, nX = 15, DOF = 105
Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/Xtmp.mat
XCond = 95.1683 (normalized)
Computing compensation for resdual AR1 bias
1 -0.5 -0.482498 (t=0.00109856)
2 -0.25 -0.268426 (t=0.00193983)
3 0 -0.0620188 (t=0.00228293)
4 0.25 0.130658 (t=0.00255922)
5 0.5 0.29742 (t=0.00282913)
AR1 Correction M: 0.0980109 1.27332
Computing contrast matrices
OLS Beta Pass
run 2 t= 0.0
reading data ... 0.52949
Global Mean 670.01
Global In-Mask Mean = 670.015 (867.091)
Rescale Target = 100
RescaleFactor = 0.14925
OLS Residual Pass
run 2 t= 0.0
reading data ... 0.545993
Saving rho1
Smoothing ACF
/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon
fsaverage lh white
Number of vertices 163842
Number of faces 327680
Total area 65416.984375
GroupSurface 82219.960938
AvgVtxArea 0.399269
AvgVtxDist 0.721953
StdVtxDist 0.195470
Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/mask.nii.gz
Found 149955 voxels in mask
Not Polynomial detrending
Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294
Only smoothing, so saving and exiting now
Found 0 voxels with corrected AR1 > 0.90
Whitening
Computing whitening matrices
Alloc Sinv: 120 120 30 ... done t = 0.00130471 sec
seg 1 4999 nrho1 = 0.114
seg 2 4999 nrho1 = 0.173
seg 3 4999 nrho1 = 0.203
seg 4 4999 nrho1 = 0.220
seg 5 4999 nrho1 = 0.231
seg 6 4999 nrho1 = 0.239
seg 7 4999 nrho1 = 0.245
seg 8 4999 nrho1 = 0.251
seg 9 4999 nrho1 = 0.257
seg 10 4999 nrho1 = 0.262
seg 11 4999 nrho1 = 0.267
seg 12 4999 nrho1 = 0.272
seg 13 4999 nrho1 = 0.276
seg 14 4999 nrho1 = 0.281
seg 15 4999 nrho1 = 0.284
seg 16 4999 nrho1 = 0.288
seg 17 4999 nrho1 = 0.292
seg 18 4999 nrho1 = 0.295
seg 19 4999 nrho1 = 0.299
seg 20 4999 nrho1 = 0.303
seg 21 4999 nrho1 = 0.307
seg 22 4999 nrho1 = 0.311
seg 23 4999 nrho1 = 0.316
seg 24 4999 nrho1 = 0.320
seg 25 4999 nrho1 = 0.325
seg 26 4999 nrho1 = 0.330
seg 27 4999 nrho1 = 0.336
seg 28 4999 nrho1 = 0.343
seg 29 4999 nrho1 = 0.356
seg 30 4984 nrho1 = 0.386
GLS Beta Pass
run 2 t= 0.0
GLS Residual Pass
run 2 t= 0.0
Found 13887 zero-valued voxels
Computing contrasts
Starting contrasts
EastDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/EastDirection exists, deleting
Saving efficiency 8.20003
Testing Motion Correction Parameters
-0.41 -1.27 -1.18 1.30 -0.33 1.28 -0.13 -0.33 0.67 -0.71 0.09 1.28 0.32 0.28 -0.13 -0.33 0.14 0.35
NorthDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/NorthDirection exists, deleting
Saving efficiency 9.04583
Testing Motion Correction Parameters
0.19 -0.58 -0.53 0.61 -0.09 0.64 -0.06 -0.01 0.12 -0.96 -0.45 0.59 0.23 0.45 -0.05 -0.01 0.06 0.01
NorthSouth J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/NorthSouth exists, deleting
Saving efficiency 6.25977
Testing Motion Correction Parameters
0.31 -2.21 -2.07 2.33 -0.20 2.44 -0.34 -0.29 0.10 -3.33 -1.14 2.25 0.83 1.47 -0.34 -0.30 0.35 0.30
SouthDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/SouthDirection exists, deleting
Saving efficiency 9.31318
Testing Motion Correction Parameters
-0.28 3.04 2.85 -3.18 0.24 -3.33 0.53 0.53 -0.04 4.30 1.32 -3.08 -1.13 -1.92 0.53 0.54 -0.54 -0.53
WestDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/WestDirection exists, deleting
Saving efficiency 8.41973
Testing Motion Correction Parameters
0.52 -0.07 -0.08 0.07 0.18 0.11 -0.22 -0.09 -0.83 -0.59 -0.66 0.07 0.20 0.42 -0.22 -0.09 0.21 0.08
WestEast J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/WestEast exists, deleting
Saving efficiency 5.39385
Testing Motion Correction Parameters
0.60 0.54 0.50 -0.55 0.32 -0.51 -0.04 0.12 -0.98 0.04 -0.42 -0.55 -0.05 0.05 -0.04 0.12 0.03 -0.13
Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/h.dat
outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005
Excluding 4 points
parfiles condition id list: 1 2 3 4 5
Found 149955/163842 (91.5) voxels in mask 1
Creating Design Matrix
... creation time = 0.001 sec
DoMCFit = 1
ntptot = 120, nX = 15, DOF = 105
Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/Xtmp.mat
XCond = 165.337 (normalized)
Computing compensation for resdual AR1 bias
1 -0.5 -0.479228 (t=0.0020821)
2 -0.25 -0.263675 (t=0.00249911)
3 0 -0.0551031 (t=0.00277528)
4 0.25 0.141897 (t=0.00304782)
5 0.5 0.317421 (t=0.00331738)
AR1 Correction M: 0.0845885 1.24876
Computing contrast matrices
OLS Beta Pass
run 3 t= 0.0
reading data ... 0.510008
Global Mean 677.59
Global In-Mask Mean = 677.591 (883.711)
Rescale Target = 100
RescaleFactor = 0.147582
OLS Residual Pass
run 3 t= 0.0
reading data ... 0.521663
Saving rho1
Smoothing ACF
/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon
fsaverage lh white
Number of vertices 163842
Number of faces 327680
Total area 65416.984375
GroupSurface 82219.960938
AvgVtxArea 0.399269
AvgVtxDist 0.721953
StdVtxDist 0.195470
Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/mask.nii.gz
Found 149955 voxels in mask
Not Polynomial detrending
Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294
Only smoothing, so saving and exiting now
Found 0 voxels with corrected AR1 > 0.90
Whitening
Computing whitening matrices
Alloc Sinv: 120 120 30 ... done t = 0.00119298 sec
seg 1 4999 nrho1 = 0.108
seg 2 4999 nrho1 = 0.128
seg 3 4999 nrho1 = 0.140
seg 4 4999 nrho1 = 0.151
seg 5 4999 nrho1 = 0.159
seg 6 4999 nrho1 = 0.165
seg 7 4999 nrho1 = 0.172
seg 8 4999 nrho1 = 0.177
seg 9 4999 nrho1 = 0.181
seg 10 4999 nrho1 = 0.186
seg 11 4999 nrho1 = 0.192
seg 12 4999 nrho1 = 0.196
seg 13 4999 nrho1 = 0.201
seg 14 4999 nrho1 = 0.205
seg 15 4999 nrho1 = 0.208
seg 16 4999 nrho1 = 0.212
seg 17 4999 nrho1 = 0.215
seg 18 4999 nrho1 = 0.219
seg 19 4999 nrho1 = 0.222
seg 20 4999 nrho1 = 0.225
seg 21 4999 nrho1 = 0.228
seg 22 4999 nrho1 = 0.231
seg 23 4999 nrho1 = 0.234
seg 24 4999 nrho1 = 0.238
seg 25 4999 nrho1 = 0.243
seg 26 4999 nrho1 = 0.247
seg 27 4999 nrho1 = 0.252
seg 28 4999 nrho1 = 0.258
seg 29 4999 nrho1 = 0.268
seg 30 4984 nrho1 = 0.286
GLS Beta Pass
run 3 t= 0.0
GLS Residual Pass
run 3 t= 0.0
Found 13887 zero-valued voxels
Computing contrasts
Starting contrasts
EastDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/EastDirection exists, deleting
Saving efficiency 8.31283
Testing Motion Correction Parameters
1.27 1.46 -0.08 0.81 0.18 -0.74 0.04 -0.03 0.80 -0.78 -1.47 -0.05 0.19 -0.79 0.04 -0.03 -0.04 0.04
NorthDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/NorthDirection exists, deleting
Saving efficiency 7.55563
Testing Motion Correction Parameters
-0.61 -0.56 -0.04 -0.48 0.03 0.44 -0.11 -0.05 -0.38 0.43 0.53 -0.05 0.06 0.46 -0.11 -0.05 0.10 0.05
NorthSouth J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/NorthSouth exists, deleting
Saving efficiency 4.41766
Testing Motion Correction Parameters
-0.03 0.11 -0.17 -0.09 0.05 0.09 0.09 0.13 -0.05 0.08 -0.12 -0.16 0.23 0.09 0.09 0.13 -0.09 -0.13
SouthDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/SouthDirection exists, deleting
Saving efficiency 6.32341
Testing Motion Correction Parameters
-0.45 -0.82 0.24 -0.20 -0.06 0.18 -0.28 -0.29 -0.23 0.20 0.82 0.21 -0.33 0.20 -0.28 -0.29 0.28 0.29
WestDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/WestDirection exists, deleting
Saving efficiency 7.86352
Testing Motion Correction Parameters
0.12 0.29 -0.12 0.05 -0.13 -0.04 0.42 0.47 0.02 -0.04 -0.26 -0.11 0.08 -0.05 0.42 0.47 -0.42 -0.47
WestEast J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/WestEast exists, deleting
Saving efficiency 5.61933
Testing Motion Correction Parameters
-0.50 -0.44 -0.02 -0.36 -0.20 0.35 0.20 0.29 -0.40 0.36 0.46 -0.04 -0.06 0.36 0.20 0.29 -0.21 -0.30
Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/h.dat
outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006
Excluding 4 points
parfiles condition id list: 1 2 3 4 5
Found 149955/163842 (91.5) voxels in mask 1
Creating Design Matrix
... creation time = 0.001 sec
DoMCFit = 1
ntptot = 120, nX = 15, DOF = 105
Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/Xtmp.mat
XCond = 60.7405 (normalized)
Computing compensation for resdual AR1 bias
1 -0.5 -0.475928 (t=0.00136245)
2 -0.25 -0.264094 (t=0.00370552)
3 0 -0.0585378 (t=0.004074)
4 0.25 0.133993 (t=0.00442966)
5 0.5 0.301425 (t=0.00478028)
AR1 Correction M: 0.0927915 1.27762
Computing contrast matrices
OLS Beta Pass
run 4 t= 0.0
reading data ... 0.513164
Global Mean 678.87
Global In-Mask Mean = 678.868 (883.905)
Rescale Target = 100
RescaleFactor = 0.147304
OLS Residual Pass
run 4 t= 0.0
reading data ... 0.518631
Saving rho1
Smoothing ACF
/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon
fsaverage lh white
Number of vertices 163842
Number of faces 327680
Total area 65416.984375
GroupSurface 82219.960938
AvgVtxArea 0.399269
AvgVtxDist 0.721953
StdVtxDist 0.195470
Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/mask.nii.gz
Found 149955 voxels in mask
Not Polynomial detrending
Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294
Only smoothing, so saving and exiting now
Found 0 voxels with corrected AR1 > 0.90
Whitening
Computing whitening matrices
Alloc Sinv: 120 120 30 ... done t = 0.00132119 sec
seg 1 4999 nrho1 = 0.109
seg 2 4999 nrho1 = 0.124
seg 3 4999 nrho1 = 0.132
seg 4 4999 nrho1 = 0.136
seg 5 4999 nrho1 = 0.140
seg 6 4999 nrho1 = 0.143
seg 7 4999 nrho1 = 0.146
seg 8 4999 nrho1 = 0.149
seg 9 4999 nrho1 = 0.153
seg 10 4999 nrho1 = 0.155
seg 11 4999 nrho1 = 0.158
seg 12 4999 nrho1 = 0.161
seg 13 4999 nrho1 = 0.164
seg 14 4999 nrho1 = 0.166
seg 15 4999 nrho1 = 0.169
seg 16 4999 nrho1 = 0.172
seg 17 4999 nrho1 = 0.175
seg 18 4999 nrho1 = 0.177
seg 19 4999 nrho1 = 0.180
seg 20 4999 nrho1 = 0.183
seg 21 4999 nrho1 = 0.185
seg 22 4999 nrho1 = 0.188
seg 23 4999 nrho1 = 0.191
seg 24 4999 nrho1 = 0.193
seg 25 4999 nrho1 = 0.197
seg 26 4999 nrho1 = 0.200
seg 27 4999 nrho1 = 0.204
seg 28 4999 nrho1 = 0.209
seg 29 4999 nrho1 = 0.214
seg 30 4984 nrho1 = 0.225
GLS Beta Pass
run 4 t= 0.0
GLS Residual Pass
run 4 t= 0.0
Found 13887 zero-valued voxels
Computing contrasts
Starting contrasts
EastDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/EastDirection exists, deleting
Saving efficiency 7.0708
Testing Motion Correction Parameters
-2.33 0.08 -0.51 -1.63 -2.43 -2.36 -0.14 -0.14 -0.35 2.32 1.42 -1.74 -0.27 1.29 -0.13 -0.14 0.13 0.14
NorthDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/NorthDirection exists, deleting
Saving efficiency 8.47542
Testing Motion Correction Parameters
-1.17 0.62 -0.06 -0.59 -0.53 -1.20 -0.60 -0.45 -2.06 1.20 1.07 -0.69 -0.18 0.42 -0.60 -0.45 0.58 0.43
NorthSouth J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/NorthSouth exists, deleting
Saving efficiency 5.23588
Testing Motion Correction Parameters
-3.21 0.33 -0.84 -2.36 -1.90 -2.95 -0.52 -0.37 -2.17 3.23 1.72 -2.58 0.04 1.94 -0.51 -0.37 0.49 0.35
SouthDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/SouthDirection exists, deleting
Saving efficiency 7.88643
Testing Motion Correction Parameters
3.93 -0.02 1.58 3.42 2.67 3.41 0.25 0.16 1.27 -3.90 -1.54 3.62 -0.26 -2.96 0.24 0.16 -0.23 -0.15
WestDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/WestDirection exists, deleting
Saving efficiency 8.82303
Testing Motion Correction Parameters
0.42 -0.77 -0.55 -0.06 0.53 0.70 0.47 0.45 0.88 -0.45 -1.10 -0.01 1.11 0.18 0.46 0.45 -0.46 -0.44
WestEast J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/WestEast exists, deleting
Saving efficiency 4.94523
Testing Motion Correction Parameters
1.64 -0.44 0.01 0.75 1.80 1.92 0.34 0.34 0.74 -1.67 -1.65 0.85 0.78 -0.49 0.34 0.34 -0.34 -0.33
Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/h.dat
outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007
Excluding 4 points
parfiles condition id list: 1 2 3 4 5
Found 149955/163842 (91.5) voxels in mask 1
Creating Design Matrix
... creation time = 0.005 sec
DoMCFit = 1
ntptot = 120, nX = 15, DOF = 105
Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/Xtmp.mat
XCond = 124.613 (normalized)
Computing compensation for resdual AR1 bias
1 -0.5 -0.486086 (t=0.00162174)
2 -0.25 -0.270277 (t=0.00303463)
3 0 -0.0627359 (t=0.0033982)
4 0.25 0.131466 (t=0.00375891)
5 0.5 0.300554 (t=0.00411693)
AR1 Correction M: 0.0977823 1.26308
Computing contrast matrices
OLS Beta Pass
run 5 t= 0.0
reading data ... 0.520289
Global Mean 676.09
Global In-Mask Mean = 676.093 (877.252)
Rescale Target = 100
RescaleFactor = 0.147909
OLS Residual Pass
run 5 t= 0.0
reading data ... 0.519612
Saving rho1
Smoothing ACF
/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon
fsaverage lh white
Number of vertices 163842
Number of faces 327680
Total area 65416.984375
GroupSurface 82219.960938
AvgVtxArea 0.399269
AvgVtxDist 0.721953
StdVtxDist 0.195470
Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/mask.nii.gz
Found 149955 voxels in mask
Not Polynomial detrending
Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294
Only smoothing, so saving and exiting now
Found 0 voxels with corrected AR1 > 0.90
Whitening
Computing whitening matrices
Alloc Sinv: 120 120 30 ... done t = 0.00187968 sec
seg 1 4999 nrho1 = 0.085
seg 2 4999 nrho1 = 0.105
seg 3 4999 nrho1 = 0.115
seg 4 4999 nrho1 = 0.123
seg 5 4999 nrho1 = 0.130
seg 6 4999 nrho1 = 0.137
seg 7 4999 nrho1 = 0.142
seg 8 4999 nrho1 = 0.146
seg 9 4999 nrho1 = 0.150
seg 10 4999 nrho1 = 0.153
seg 11 4999 nrho1 = 0.157
seg 12 4999 nrho1 = 0.160
seg 13 4999 nrho1 = 0.163
seg 14 4999 nrho1 = 0.165
seg 15 4999 nrho1 = 0.168
seg 16 4999 nrho1 = 0.170
seg 17 4999 nrho1 = 0.173
seg 18 4999 nrho1 = 0.175
seg 19 4999 nrho1 = 0.178
seg 20 4999 nrho1 = 0.181
seg 21 4998 nrho1 = 0.184
seg 22 5000 nrho1 = 0.187
seg 23 4999 nrho1 = 0.189
seg 24 4999 nrho1 = 0.192
seg 25 4999 nrho1 = 0.196
seg 26 4999 nrho1 = 0.200
seg 27 4999 nrho1 = 0.204
seg 28 4999 nrho1 = 0.208
seg 29 4999 nrho1 = 0.212
seg 30 4984 nrho1 = 0.221
GLS Beta Pass
run 5 t= 0.0
GLS Residual Pass
run 5 t= 0.0
Found 13887 zero-valued voxels
Computing contrasts
Starting contrasts
EastDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/EastDirection exists, deleting
Saving efficiency 8.32033
Testing Motion Correction Parameters
-0.23 1.71 1.63 -1.15 0.51 -0.83 0.71 0.66 -0.01 0.56 1.08 -1.21 -0.60 1.24 0.71 0.67 -0.72 -0.67
NorthDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/NorthDirection exists, deleting
Saving efficiency 8.00595
Testing Motion Correction Parameters
-0.23 -0.44 -0.55 0.66 0.65 0.38 0.13 0.27 -0.51 0.15 -0.13 0.64 0.81 -0.78 0.13 0.27 -0.14 -0.29
NorthSouth J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/NorthSouth exists, deleting
Saving efficiency 4.89576
Testing Motion Correction Parameters
-0.14 0.52 0.36 -0.27 0.67 -0.28 -0.19 -0.07 -1.09 0.26 0.32 -0.29 0.03 0.24 -0.19 -0.07 0.18 0.06
SouthDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/SouthDirection exists, deleting
Saving efficiency 7.34061
Testing Motion Correction Parameters
0.02 -1.94 -1.65 1.51 -0.41 1.15 0.54 0.43 1.22 -0.28 -0.83 1.55 0.67 -1.57 0.54 0.43 -0.52 -0.42
WestDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/WestDirection exists, deleting
Saving efficiency 7.63854
Testing Motion Correction Parameters
0.49 0.66 0.65 -1.02 -0.70 -0.67 -2.05 -2.12 -0.44 -0.35 0.05 -0.99 -0.93 1.14 -2.04 -2.11 2.06 2.12
WestEast J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/WestEast exists, deleting
Saving efficiency 5.18212
Testing Motion Correction Parameters
0.45 -0.28 -0.26 0.02 -0.78 0.03 -1.76 -1.75 -0.23 -0.57 -0.47 0.03 -0.11 -0.01 -1.75 -1.76 1.77 1.76
Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/h.dat
outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008
Excluding 4 points
parfiles condition id list: 1 2 3 4 5
Found 149955/163842 (91.5) voxels in mask 1
Creating Design Matrix
... creation time = 0.001 sec
DoMCFit = 1
ntptot = 120, nX = 15, DOF = 105
Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/Xtmp.mat
XCond = 51.8534 (normalized)
Computing compensation for resdual AR1 bias
1 -0.5 -0.476763 (t=0.00135744)
2 -0.25 -0.264159 (t=0.00379904)
3 0 -0.0568164 (t=0.00417289)
4 0.25 0.138914 (t=0.00453842)
5 0.5 0.31205 (t=0.0048956)
AR1 Correction M: 0.0874009 1.2602
Computing contrast matrices
OLS Beta Pass
run 6 t= 0.0
reading data ... 0.525443
Global Mean 675.22
Global In-Mask Mean = 675.219 (879.593)
Rescale Target = 100
RescaleFactor = 0.1481
OLS Residual Pass
run 6 t= 0.0
reading data ... 0.518304
Saving rho1
Smoothing ACF
/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon
fsaverage lh white
Number of vertices 163842
Number of faces 327680
Total area 65416.984375
GroupSurface 82219.960938
AvgVtxArea 0.399269
AvgVtxDist 0.721953
StdVtxDist 0.195470
Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/mask.nii.gz
Found 149955 voxels in mask
Not Polynomial detrending
Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294
Only smoothing, so saving and exiting now
Found 0 voxels with corrected AR1 > 0.90
Whitening
Computing whitening matrices
Alloc Sinv: 120 120 30 ... done t = 0.00163141 sec
seg 1 4999 nrho1 = 0.065
seg 2 4999 nrho1 = 0.079
seg 3 4999 nrho1 = 0.097
seg 4 4999 nrho1 = 0.104
seg 5 4999 nrho1 = 0.109
seg 6 4999 nrho1 = 0.113
seg 7 4999 nrho1 = 0.118
seg 8 4999 nrho1 = 0.122
seg 9 4999 nrho1 = 0.126
seg 10 4999 nrho1 = 0.129
seg 11 4999 nrho1 = 0.132
seg 12 4999 nrho1 = 0.135
seg 13 4999 nrho1 = 0.138
seg 14 4999 nrho1 = 0.141
seg 15 4999 nrho1 = 0.143
seg 16 4999 nrho1 = 0.145
seg 17 4999 nrho1 = 0.147
seg 18 4999 nrho1 = 0.150
seg 19 4999 nrho1 = 0.152
seg 20 4999 nrho1 = 0.154
seg 21 4999 nrho1 = 0.156
seg 22 4999 nrho1 = 0.158
seg 23 4999 nrho1 = 0.160
seg 24 4999 nrho1 = 0.162
seg 25 4999 nrho1 = 0.164
seg 26 4999 nrho1 = 0.166
seg 27 4999 nrho1 = 0.169
seg 28 4999 nrho1 = 0.172
seg 29 4999 nrho1 = 0.176
seg 30 4984 nrho1 = 0.183
GLS Beta Pass
run 6 t= 0.0
GLS Residual Pass
run 6 t= 0.0
Found 13887 zero-valued voxels
Computing contrasts
Starting contrasts
EastDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/EastDirection exists, deleting
Saving efficiency 8.35905
Testing Motion Correction Parameters
-0.20 0.68 0.46 -0.61 1.27 -0.67 0.32 0.32 -0.15 0.47 0.76 -0.65 -0.11 0.40 0.32 0.32 -0.32 -0.32
NorthDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/NorthDirection exists, deleting
Saving efficiency 7.88911
Testing Motion Correction Parameters
5.39 0.46 1.48 -0.63 1.58 -2.64 0.81 0.76 0.58 -4.78 -0.37 -0.53 -0.75 -0.47 0.80 0.77 -0.80 -0.75
NorthSouth J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/NorthSouth exists, deleting
Saving efficiency 5.12416
Testing Motion Correction Parameters
3.95 2.59 3.69 -2.79 2.10 -4.95 1.82 1.69 0.70 -2.27 0.98 -2.68 -2.25 0.65 1.82 1.69 -1.81 -1.67
SouthDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/SouthDirection exists, deleting
Saving efficiency 7.5691
Testing Motion Correction Parameters
-1.07 -4.06 -4.12 4.05 -1.49 4.61 -1.98 -1.82 -0.50 0.07 -3.06 4.06 2.81 -2.36 -1.98 -1.82 1.97 1.81
WestDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/WestDirection exists, deleting
Saving efficiency 8.57407
Testing Motion Correction Parameters
-2.13 1.40 0.61 -1.24 -1.33 -0.07 0.24 0.20 0.11 3.21 2.60 -1.33 -1.09 2.80 0.25 0.20 -0.24 -0.19
WestEast J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/WestEast exists, deleting
Saving efficiency 5.89219
Testing Motion Correction Parameters
-0.78 0.21 0.05 -0.19 -1.83 0.30 -0.03 -0.06 0.17 0.94 0.54 -0.20 -0.44 0.85 -0.03 -0.06 0.04 0.06
Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/h.dat
outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009
Excluding 4 points
parfiles condition id list: 1 2 3 4 5
Found 149955/163842 (91.5) voxels in mask 1
Creating Design Matrix
... creation time = 0.000 sec
DoMCFit = 1
ntptot = 120, nX = 15, DOF = 105
Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/Xtmp.mat
XCond = 101.806 (normalized)
Computing compensation for resdual AR1 bias
1 -0.5 -0.477022 (t=0.00238827)
2 -0.25 -0.26476 (t=0.00292959)
3 0 -0.057918 (t=0.00329708)
4 0.25 0.137004 (t=0.00365946)
5 0.5 0.308384 (t=0.00401563)
AR1 Correction M: 0.0896574 1.26523
Computing contrast matrices
OLS Beta Pass
run 7 t= 0.0
reading data ... 0.528405
Global Mean 669.23
Global In-Mask Mean = 669.226 (876.627)
Rescale Target = 100
RescaleFactor = 0.149426
OLS Residual Pass
run 7 t= 0.0
reading data ... 0.542751
Saving rho1
Smoothing ACF
/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon
fsaverage lh white
Number of vertices 163842
Number of faces 327680
Total area 65416.984375
GroupSurface 82219.960938
AvgVtxArea 0.399269
AvgVtxDist 0.721953
StdVtxDist 0.195470
Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/mask.nii.gz
Found 149955 voxels in mask
Not Polynomial detrending
Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294
Only smoothing, so saving and exiting now
Found 0 voxels with corrected AR1 > 0.90
Whitening
Computing whitening matrices
Alloc Sinv: 120 120 30 ... done t = 0.00116701 sec
seg 1 4999 nrho1 = 0.075
seg 2 4999 nrho1 = 0.091
seg 3 4999 nrho1 = 0.100
seg 4 4999 nrho1 = 0.105
seg 5 4999 nrho1 = 0.108
seg 6 4999 nrho1 = 0.112
seg 7 4999 nrho1 = 0.115
seg 8 4999 nrho1 = 0.117
seg 9 4999 nrho1 = 0.119
seg 10 4999 nrho1 = 0.121
seg 11 4999 nrho1 = 0.123
seg 12 4999 nrho1 = 0.125
seg 13 4998 nrho1 = 0.127
seg 14 5000 nrho1 = 0.128
seg 15 4999 nrho1 = 0.130
seg 16 4999 nrho1 = 0.131
seg 17 4999 nrho1 = 0.132
seg 18 4999 nrho1 = 0.134
seg 19 4999 nrho1 = 0.135
seg 20 4999 nrho1 = 0.136
seg 21 4999 nrho1 = 0.138
seg 22 4999 nrho1 = 0.139
seg 23 4999 nrho1 = 0.141
seg 24 4999 nrho1 = 0.143
seg 25 4999 nrho1 = 0.145
seg 26 4999 nrho1 = 0.147
seg 27 4999 nrho1 = 0.149
seg 28 4999 nrho1 = 0.152
seg 29 4999 nrho1 = 0.155
seg 30 4984 nrho1 = 0.163
GLS Beta Pass
run 7 t= 0.0
GLS Residual Pass
run 7 t= 0.0
Found 13887 zero-valued voxels
Computing contrasts
Starting contrasts
EastDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/EastDirection exists, deleting
Saving efficiency 7.5071
Testing Motion Correction Parameters
-1.36 -2.08 -1.90 1.12 -1.53 -0.31 0.07 0.12 0.22 1.06 -0.39 1.94 1.41 -0.79 0.07 0.12 -0.07 -0.12
NorthDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/NorthDirection exists, deleting
Saving efficiency 7.74585
Testing Motion Correction Parameters
0.09 -0.14 -0.39 -0.32 0.76 0.40 -0.01 -0.07 0.16 -0.16 -0.65 0.00 0.59 0.36 -0.01 -0.07 0.01 0.08
NorthSouth J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/NorthSouth exists, deleting
Saving efficiency 5.17157
Testing Motion Correction Parameters
-0.72 -1.55 -1.86 0.32 -0.06 0.06 -0.09 -0.19 0.37 0.47 -0.91 1.17 1.86 -0.16 -0.09 -0.19 0.10 0.19
SouthDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/SouthDirection exists, deleting
Saving efficiency 7.90149
Testing Motion Correction Parameters
1.74 2.88 2.86 -1.20 1.01 0.26 0.15 0.23 -0.44 -1.30 0.73 -2.53 -2.43 0.80 0.15 0.23 -0.16 -0.24
WestDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/WestDirection exists, deleting
Saving efficiency 9.82655
Testing Motion Correction Parameters
-0.25 -0.08 0.07 0.40 -0.41 -0.40 -0.27 -0.34 -0.02 0.30 0.39 0.18 -0.15 -0.41 -0.27 -0.34 0.27 0.34
WestEast J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/WestEast exists, deleting
Saving efficiency 5.87919
Testing Motion Correction Parameters
0.51 1.01 1.12 -0.32 0.47 -0.01 -0.20 -0.28 -0.15 -0.35 0.52 -0.82 -0.95 0.18 -0.20 -0.28 0.20 0.28
Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/h.dat
outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010
Excluding 4 points
parfiles condition id list: 1 2 3 4 5
Found 149955/163842 (91.5) voxels in mask 1
Creating Design Matrix
... creation time = 0.000 sec
DoMCFit = 1
ntptot = 120, nX = 15, DOF = 105
Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/Xtmp.mat
XCond = 61.9774 (normalized)
Computing compensation for resdual AR1 bias
1 -0.5 -0.484824 (t=0.00132304)
2 -0.25 -0.268378 (t=0.00370903)
3 0 -0.0601149 (t=0.0041002)
4 0.25 0.135279 (t=0.00446539)
5 0.5 0.307195 (t=0.00483421)
AR1 Correction M: 0.0931041 1.25531
Computing contrast matrices
OLS Beta Pass
run 8 t= 0.0
reading data ... 0.514232
Global Mean 669.69
Global In-Mask Mean = 669.692 (876.682)
Rescale Target = 100
RescaleFactor = 0.149322
OLS Residual Pass
run 8 t= 0.0
reading data ... 0.519384
Saving rho1
Smoothing ACF
/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon
fsaverage lh white
Number of vertices 163842
Number of faces 327680
Total area 65416.984375
GroupSurface 82219.960938
AvgVtxArea 0.399269
AvgVtxDist 0.721953
StdVtxDist 0.195470
Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/mask.nii.gz
Found 149955 voxels in mask
Not Polynomial detrending
Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294
Only smoothing, so saving and exiting now
Found 0 voxels with corrected AR1 > 0.90
Whitening
Computing whitening matrices
Alloc Sinv: 120 120 30 ... done t = 0.00128195 sec
seg 1 4999 nrho1 = 0.082
seg 2 4999 nrho1 = 0.094
seg 3 4999 nrho1 = 0.100
seg 4 4999 nrho1 = 0.105
seg 5 4999 nrho1 = 0.110
seg 6 4999 nrho1 = 0.113
seg 7 4999 nrho1 = 0.116
seg 8 4999 nrho1 = 0.118
seg 9 4999 nrho1 = 0.120
seg 10 4999 nrho1 = 0.122
seg 11 4999 nrho1 = 0.123
seg 12 4999 nrho1 = 0.125
seg 13 4999 nrho1 = 0.127
seg 14 4999 nrho1 = 0.128
seg 15 4999 nrho1 = 0.130
seg 16 4999 nrho1 = 0.131
seg 17 4999 nrho1 = 0.133
seg 18 4999 nrho1 = 0.134
seg 19 4999 nrho1 = 0.136
seg 20 4999 nrho1 = 0.137
seg 21 4999 nrho1 = 0.140
seg 22 4999 nrho1 = 0.141
seg 23 4999 nrho1 = 0.143
seg 24 4999 nrho1 = 0.145
seg 25 4999 nrho1 = 0.148
seg 26 4999 nrho1 = 0.150
seg 27 4999 nrho1 = 0.153
seg 28 4999 nrho1 = 0.156
seg 29 4999 nrho1 = 0.161
seg 30 4984 nrho1 = 0.168
GLS Beta Pass
run 8 t= 0.0
GLS Residual Pass
run 8 t= 0.0
Found 13887 zero-valued voxels
Computing contrasts
Starting contrasts
EastDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/EastDirection exists, deleting
Saving efficiency 8.63898
Testing Motion Correction Parameters
0.03 0.56 -0.60 -0.05 -1.54 -0.43 -1.32 -1.28 -0.41 0.10 -0.53 -0.21 0.25 -0.05 -1.31 -1.28 1.31 1.27
NorthDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/NorthDirection exists, deleting
Saving efficiency 8.62758
Testing Motion Correction Parameters
-0.27 -1.52 1.94 0.78 -0.04 1.19 1.04 0.90 1.42 -0.04 1.95 1.39 -1.89 -0.31 1.04 0.89 -1.03 -0.89
NorthSouth J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/NorthSouth exists, deleting
Saving efficiency 5.84006
Testing Motion Correction Parameters
-0.08 -1.03 1.26 0.51 -1.18 0.92 0.46 0.36 0.86 -0.12 1.12 0.91 -1.68 -0.18 0.46 0.36 -0.45 -0.35
SouthDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/SouthDirection exists, deleting
Saving efficiency 8.40369
Testing Motion Correction Parameters
-0.10 0.23 -0.24 -0.10 2.28 -0.29 0.07 0.11 -0.12 0.16 -0.13 -0.18 0.67 0.01 0.06 0.11 -0.07 -0.11
WestDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/WestDirection exists, deleting
Saving efficiency 8.82888
Testing Motion Correction Parameters
0.38 0.23 -0.40 -0.48 -0.24 -0.12 0.04 0.05 -0.45 -0.23 -0.64 -0.59 0.31 0.36 0.04 0.05 -0.04 -0.05
WestEast J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/WestEast exists, deleting
Saving efficiency 6.07489
Testing Motion Correction Parameters
0.19 -0.14 0.07 -0.22 0.53 0.15 0.73 0.72 -0.01 -0.21 -0.03 -0.16 0.02 0.24 0.73 0.72 -0.73 -0.72
Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/h.dat
outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011
Excluding 4 points
parfiles condition id list: 1 2 3 4 5
Found 149955/163842 (91.5) voxels in mask 1
Creating Design Matrix
... creation time = 0.000 sec
DoMCFit = 1
ntptot = 120, nX = 15, DOF = 105
Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/Xtmp.mat
XCond = 67.2393 (normalized)
Computing compensation for resdual AR1 bias
1 -0.5 -0.482103 (t=0.000481254)
2 -0.25 -0.268489 (t=0.00095232)
3 0 -0.0609972 (t=0.00129186)
4 0.25 0.133733 (t=0.00162726)
5 0.5 0.303554 (t=0.00196589)
AR1 Correction M: 0.0946469 1.26431
Computing contrast matrices
OLS Beta Pass
run 9 t= 0.0
reading data ... 0.509026
Global Mean 669.50
Global In-Mask Mean = 669.496 (870.252)
Rescale Target = 100
RescaleFactor = 0.149366
OLS Residual Pass
run 9 t= 0.0
reading data ... 0.521533
Saving rho1
Smoothing ACF
/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon
fsaverage lh white
Number of vertices 163842
Number of faces 327680
Total area 65416.984375
GroupSurface 82219.960938
AvgVtxArea 0.399269
AvgVtxDist 0.721953
StdVtxDist 0.195470
Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/mask.nii.gz
Found 149955 voxels in mask
Not Polynomial detrending
Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294
Only smoothing, so saving and exiting now
Found 0 voxels with corrected AR1 > 0.90
Whitening
Computing whitening matrices
Alloc Sinv: 120 120 30 ... done t = 0.0011589 sec
seg 1 4999 nrho1 = 0.083
seg 2 4999 nrho1 = 0.096
seg 3 4999 nrho1 = 0.103
seg 4 4999 nrho1 = 0.109
seg 5 4999 nrho1 = 0.113
seg 6 4999 nrho1 = 0.116
seg 7 4999 nrho1 = 0.118
seg 8 4999 nrho1 = 0.120
seg 9 4999 nrho1 = 0.121
seg 10 4999 nrho1 = 0.123
seg 11 4999 nrho1 = 0.125
seg 12 4999 nrho1 = 0.126
seg 13 4999 nrho1 = 0.128
seg 14 4999 nrho1 = 0.130
seg 15 4999 nrho1 = 0.131
seg 16 4999 nrho1 = 0.133
seg 17 4999 nrho1 = 0.134
seg 18 4999 nrho1 = 0.136
seg 19 4999 nrho1 = 0.137
seg 20 4999 nrho1 = 0.138
seg 21 4999 nrho1 = 0.139
seg 22 4999 nrho1 = 0.141
seg 23 4999 nrho1 = 0.142
seg 24 4999 nrho1 = 0.144
seg 25 4999 nrho1 = 0.145
seg 26 4999 nrho1 = 0.147
seg 27 4999 nrho1 = 0.149
seg 28 4999 nrho1 = 0.151
seg 29 4999 nrho1 = 0.155
seg 30 4984 nrho1 = 0.164
GLS Beta Pass
run 9 t= 0.0
GLS Residual Pass
run 9 t= 0.0
Found 13887 zero-valued voxels
Computing contrasts
Starting contrasts
EastDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/EastDirection exists, deleting
Saving efficiency 8.37828
Testing Motion Correction Parameters
-0.43 -0.20 0.33 -0.04 -0.67 -0.07 0.25 0.07 2.13 0.56 0.88 0.05 -0.61 0.01 0.25 0.07 -0.23 -0.06
NorthDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/NorthDirection exists, deleting
Saving efficiency 8.30357
Testing Motion Correction Parameters
-0.11 -0.10 -0.03 0.07 -0.04 -0.09 0.02 0.11 -0.52 0.11 0.08 0.08 0.02 -0.08 0.02 0.11 -0.03 -0.11
NorthSouth J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/NorthSouth exists, deleting
Saving efficiency 5.34095
Testing Motion Correction Parameters
-0.22 -0.11 0.19 -0.03 -0.41 -0.03 -0.19 -0.17 -0.14 0.28 0.45 0.02 -0.35 0.01 -0.19 -0.17 0.19 0.17
SouthDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/SouthDirection exists, deleting
Saving efficiency 7.74613
Testing Motion Correction Parameters
0.24 0.08 -0.39 0.12 0.69 -0.03 0.38 0.46 -0.18 -0.35 -0.69 0.04 0.68 -0.10 0.37 0.46 -0.38 -0.46
WestDirection J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/WestDirection exists, deleting
Saving efficiency 8.64267
Testing Motion Correction Parameters
0.26 0.22 0.08 -0.17 0.01 0.22 -0.87 -0.84 -0.67 -0.26 -0.16 -0.19 -0.08 0.18 -0.87 -0.84 0.86 0.82
WestEast J=1 -------------
/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/WestEast exists, deleting
Saving efficiency 5.84935
Testing Motion Correction Parameters
0.45 0.27 -0.13 -0.07 0.37 0.18 -0.70 -0.51 -1.84 -0.53 -0.63 -0.15 0.26 0.10 -0.70 -0.51 0.68 0.49
Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/h.dat
outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr012
Excluding 4 points
ERROR: fast_st2fir: two or more presentations are simultaneous
ERROR: creating FIR design matrix for Condition01
Dot indexing is not supported for variables of this type.
Error in flac_customize (line 354)
if(~isempty(flacnew.TFmtx))
Error in fast_selxavg3b (line 179)
flac = flac_customize(flac);
>> ------------------------------------------
ERROR: fast_selxavg3() failed\n
Ninas-MacBook-Pro:FunctionalData ninakhatibi$
On Wed, Dec 23, 2020 at 9:27 PM Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edu> wrote:
Can you send the full terminal output? Do all subjects have the same paradigm files?_______________________________________________
On 12/21/2020 5:24 AM, Nina Khatibi wrote:
External Email - Use Caution
No, I have checked them all.
On Thu, Dec 17, 2020 at 6:05 PM Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edu> wrote:
Are there presentations that are simultaneous?_______________________________________________
On 12/12/2020 3:19 AM, Nina Khatibi wrote:
External Email - Use Caution
Hi,I'm using a functional analyse with selxavg3-sess, i have 25 subjects and each subject contains 15 runs, I've done plenty of analyses with different paradigm files, but now with a paradigm file of 5 conditions, I face an error on subject 22 run 12, which I can not solve.I wonder if you can help me.I'm using macbook pro 2018, macOS Mojave 10.14.6 and freesurfer-darwin-macOS-7.1.1-20200811-8b40551
outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr012
Excluding 4 points
ERROR: fast_st2fir: two or more presentations are simultaneous
ERROR: creating FIR design matrix for Condition01
Dot indexing is not supported for variables of this type.
Error in flac_customize (line 354)
if(~isempty(flacnew.TFmtx))
Error in fast_selxavg3b (line 179)
flac = flac_customize(flac);
>> ------------------------------------------
ERROR: fast_selxavg3() failed\n
Regards,
Nina
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer