I was using FreeSurfer v6 for my research. Recently, I started
move to FreeSurfer v7.2.
Some patients, that had extra large error (xL error),
were running fine (recon-all) in freesurfer 6 (it took time,
but the process finished, and the segmentation was fine too)
but in freesurfer 7, same patient recon-all encountered the
extra large error (e.g., CORRECTING DEFECT 35
(vertices=9718, convex hull=1801, v0=40087 Command
terminated by signal 11) and after couple of hours recon-all
exited (recon-all -s 8375 exited with ERRORS ). I am not
sure why recon-all is existing for freesurfer 7.2 and how
can I stop that.
Thank you
Rahul