Was gtmseg.mgz created with the gtmseg script?

Dear Freesurfer community,

 

An error has occured while applying PET partial volume correction using mri_gtmpvc. A snippet from the log file:

 

Reading /projects/PET/recon/ID247/mri/gtmseg.lta
Replacing 18
ERROR: CheckSegTissueType() tissue type for seg 29 Left-undetermined not set
Failed tissue type check

 

 

gtmseg was run as: gtmseg --s ID247 and completed without errors.

mri_gtmpvc was run as:

mri_gtmpvc --i /projects/PET/processed/ID247/ID247_PIBStatic.nii.gz --psf 2 --no-rescale --seg /projects/PET/recon/ID247/mri/gtmseg.mgz --reg /projects/PET/processed/ID247/PET2MRI.lta --default-seg-merge --o /projects/PET/processed/ID247/gtmpvcYES.output/SGTM/non_scaled --save-input --km-ref 8 47 --km-hb 11 12 13 50 51 52

 

How could this problem be solved?

 

Thank you.

 

Best regards,

Donatas

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