On Nov 18, 2021, at 15:55, Georgia Kapizioni <geo.kapizioni@gmail.com> wrote:

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Thank you so much for your reply Eugenio.

I have 16 GB of RAM. Do you think this would be a problem?

Thanks again,

Georgia

On 18 Nov 2021, at 10:04 PM, Georgia Kapizioni <geo.kapizioni@gmail.com> wrote:

Dear Freesurfer experts, 

I am trying to run hippocampal subfields segmentation, using the command: segmentHA_T1.sh subject

The analysis is running for approximately 20 mins and then the following error appears:

f this problem is reproducible, please submit a Service Request via: MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://www.mathworks.com/support/contact_us/ A technical support engineer might contact you with further information. Thank you for your help.** This crash report has been saved to disk as /Users/theodore/matlab_crash_dump.4118-1 ** MATLAB is exiting because of fatal error /Applications/freesurfer/7.1.1/bin/run_segmentSubjectT1_autoEstimateAlveusML.sh: line 33: 4118 Killed: 9 /Applications/freesurfer/7.1.1/bin/segmentSubjectT1_autoEstimateAlveusML.app/Contents/MacOS/segmentSubjectT1_autoEstimateAlveusML 6529 /Users/xxx/Downloads/xxx/qcache 0.333333333333333333333333333333333333 /Applications/freesurfer/7.1.1/average/HippoSF/atlas/AtlasMesh.gz /Applications/freesurfer/7.1.1/average/HippoSF/atlas/AtlasDump.mgz /Applications/freesurfer/7.1.1/average/HippoSF/atlas/compressionLookupTable.txt 0.05 left L-BFGS v21 '/Applications/freesurfer/7.1.1/bin/fs_run_from_mcr /Applications/freesurfer/7.1.1/bin/' 0 Darwin MacBook-Pro-Theodore.local 20.3.0 Darwin Kernel Version 20.3.0: Thu Jan 21 00:07:06 PST 2021; root:xnu-7195.81.3~1/RELEASE_X86_64 x86_64 T1 hippocampal subfields exited with ERRORS at Πεμ 18 Νοε 2021 15:34:58 EET

Attached please also find the script output. I am using the 7. 1. version of FS.

Could you please help me resolve this issue? 

Thank you in advance,

Georgia

<hippocampal-subfields-T1.log>

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