FreeSurfer BIDS App is now available on the OpenNeuro.org platform. This means that you can run recon-all on your datasets (with longitudinal pipeline and study specific template estimation) in the cloud for free (see example results here).

You can learn more about OpenNeuro.org in the FAQ and about the details of the FreeSurfer BIDS App here.

Let us know if you have any questions!

Best,

The OpenNeuro Team

PS If you are developing a neuroimaging pipeline and would like to host it on OpenNeuro.org please get in touch. We a non-profit project dedicated to enabling access to cutting edge neuroimaging methods and incentivizing data sharing.