My name is Ittai and I am currently working on my M.Sc. in the department of Neurobiology in Tel Aviv University.  I am a new FreeSurfer user.

My question regarding the software is- 

After successfully running my data (T1 image - MPRAGE) through FS, I would like to extract both cortical surfaces (adjacent to pia and white matter) to Matlab.

Is there a simple method of extracting these surface data to Matlab? or converting them to a format that is compatible with Matlab?

I would greatly appreciate any help in this matter.

Thanks in advance,

Ittai Shamir