Hi, there,

Sorry, I asked the same question yesterday, but I think I didn't explain it clear.
I have the two scans (001.mgz and 002.mgz) of the same subject, 001.mgz is used as the input of recon-all .... -autorecon1,  and I only run -autorecon1.
now I have a brainmask.mgz using 001.mgz, I want to register 002.mgz using brainmask.mgz as reference volume.

Dr. Greve mentioned that I can use bbregister, but I got a problem now, becuase I only run autorecon1, I do not have lh.white which will be acquired after autorecon2.
The bbregister command stopped in the middel.

My command line is

bbregister --s data_2 --mov 002.mgz --init-fsl --t1 --reg brainreg.dat --o brainmaskReg.mgz

I got a error as,

Loading mov
Loading lh.white surf
No such file or directory

Is there an option that I do not use lh.white, just use the information I got after autorecon1 to do the registration, or I need use other commands?

Thanks a lot!

Guang

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